You are viewing a plain text version of this content. The canonical link for it is here.
Posted to commits@sdap.apache.org by fg...@apache.org on 2019/01/23 17:56:39 UTC
[incubator-sdap-ningesterpy] 16/29: SDAP-26 Create new ningesterpy
processor to delete axis from data array
This is an automated email from the ASF dual-hosted git repository.
fgreg pushed a commit to branch v1.0.0-rc1
in repository https://gitbox.apache.org/repos/asf/incubator-sdap-ningesterpy.git
commit 7388987bb4ebcb0b97d299897c30cde97bfbe1a0
Author: nchung <ng...@gmail.com>
AuthorDate: Wed Feb 28 15:23:02 2018 -0800
SDAP-26 Create new ningesterpy processor to delete axis from data array
---
sdap/processors/__init__.py | 2 ++
sdap/processors/deleteunitaxis.py | 43 +++++++++++++++++++++++++++++++++
tests/deleteunitaxis_test.py | 51 +++++++++++++++++++++++++++++++++++++++
3 files changed, 96 insertions(+)
diff --git a/sdap/processors/__init__.py b/sdap/processors/__init__.py
index 8f30cb8..8a48500 100644
--- a/sdap/processors/__init__.py
+++ b/sdap/processors/__init__.py
@@ -52,6 +52,7 @@ class NexusTileProcessor(Processor):
from sdap.processors.callncpdq import CallNcpdq
from sdap.processors.callncra import CallNcra
from sdap.processors.computespeeddirfromuv import ComputeSpeedDirFromUV
+from sdap.processors.deleteunitaxis import DeleteUnitAxis
from sdap.processors.emptytilefilter import EmptyTileFilter
from sdap.processors.kelvintocelsius import KelvinToCelsius
from sdap.processors.normalizetimebeginningofmonth import NormalizeTimeBeginningOfMonth
@@ -65,6 +66,7 @@ INSTALLED_PROCESSORS = {
"CallNcpdq": CallNcpdq,
"CallNcra": CallNcra,
"ComputeSpeedDirFromUV": ComputeSpeedDirFromUV,
+ "DeleteUnitAxis": DeleteUnitAxis,
"EmptyTileFilter": EmptyTileFilter,
"KelvinToCelsius": KelvinToCelsius,
"NormalizeTimeBeginningOfMonth": NormalizeTimeBeginningOfMonth,
diff --git a/sdap/processors/deleteunitaxis.py b/sdap/processors/deleteunitaxis.py
new file mode 100644
index 0000000..602f71b
--- /dev/null
+++ b/sdap/processors/deleteunitaxis.py
@@ -0,0 +1,43 @@
+# Licensed to the Apache Software Foundation (ASF) under one or more
+# contributor license agreements. See the NOTICE file distributed with
+# this work for additional information regarding copyright ownership.
+# The ASF licenses this file to You under the Apache License, Version 2.0
+# (the "License"); you may not use this file except in compliance with
+# the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+import numpy
+from nexusproto.serialization import from_shaped_array, to_shaped_array
+
+from sdap.processors import NexusTileProcessor
+
+
+class DeleteUnitAxis(NexusTileProcessor):
+
+ def __init__(self, dimension, *args, **kwargs):
+ super().__init__(*args, **kwargs)
+
+ self.dimension = dimension
+
+ def process_nexus_tile(self, nexus_tile):
+ axis = [x.split(':')[0] for x in nexus_tile.summary.section_spec.split(',')].index(self.dimension)
+
+ the_tile_type = nexus_tile.tile.WhichOneof("tile_type")
+
+ the_tile_data = getattr(nexus_tile.tile, the_tile_type)
+
+ var_data = from_shaped_array(the_tile_data.variable_data)
+
+ if numpy.size(var_data, axis) == 1:
+ the_tile_data.variable_data.CopyFrom(to_shaped_array(numpy.squeeze(var_data, axis=axis)))
+ else:
+ raise RuntimeError("Cannot delete axis for dimension %s because length is not 1." % self.dimension)
+
+ yield nexus_tile
diff --git a/tests/deleteunitaxis_test.py b/tests/deleteunitaxis_test.py
new file mode 100644
index 0000000..32e4d94
--- /dev/null
+++ b/tests/deleteunitaxis_test.py
@@ -0,0 +1,51 @@
+# Licensed to the Apache Software Foundation (ASF) under one or more
+# contributor license agreements. See the NOTICE file distributed with
+# this work for additional information regarding copyright ownership.
+# The ASF licenses this file to You under the Apache License, Version 2.0
+# (the "License"); you may not use this file except in compliance with
+# the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+import unittest
+from os import path
+
+from nexusproto import DataTile_pb2 as nexusproto
+from nexusproto.serialization import from_shaped_array
+
+import sdap.processors
+
+
+class TestDeleteTimeAxis(unittest.TestCase):
+ def setUp(self):
+ self.module = sdap.processors.DeleteUnitAxis("time")
+
+ def test_kelvin_to_celsius(self):
+ test_file = path.join(path.dirname(__file__), 'dumped_nexustiles', 'avhrr_nonempty_nexustile.bin')
+
+ with open(test_file, 'rb') as f:
+ nexustile_str = f.read()
+
+ nexus_tile_before = nexusproto.NexusTile.FromString(nexustile_str)
+
+ sst_before = from_shaped_array(nexus_tile_before.tile.grid_tile.variable_data)
+
+ self.assertEqual((1, 10, 10), sst_before.shape)
+
+ results = list(self.module.process(nexustile_str))
+
+ nexus_tile_after = results[0]
+
+ sst_after = from_shaped_array(nexus_tile_after.tile.grid_tile.variable_data)
+
+ self.assertEqual((10, 10), sst_after.shape)
+
+
+if __name__ == '__main__':
+ unittest.main()