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Posted to issues@sedona.apache.org by "paleolimbot (via GitHub)" <gi...@apache.org> on 2026/05/23 01:42:25 UTC
[I] c/sedona-gdal: [sedona-db]
paleolimbot opened a new issue, #870:
URL: https://github.com/apache/sedona-db/issues/870
In https://github.com/apache/sedona-db/pull/858 there's a CI failure that seems unrelated to the changes there
https://github.com/apache/sedona-db/actions/runs/26306734414/job/77445334416?pr=858#step:14:1548
```
test mem::tests::test_mem_builder_mixed_band_types ... ok
test mem::tests::test_mem_builder_mixed_owned_and_external_bands ... ok
test mem::tests::test_mem_builder_multi_band ... ok
test mem::tests::test_mem_builder_single_band ... ok
test mem::tests::test_mem_builder_with_epsg_code_projection ... ok
test mem::tests::test_mem_builder_with_geo_transform ... ok
test mem::tests::test_mem_builder_with_nodata ... ok
test mem::tests::test_mem_builder_with_owned_bands ... ok
test dataset::tests::test_set_projection_roundtrip ... ok
test mem::tests::test_mem_builder_zero_bands ... ok
double free or corruption (fasttop)
error: test failed, to rerun pass `-p sedona-gdal --lib`
Caused by:
process didn't exit successfully: `/home/runner/work/sedona-db/sedona-db/target/debug/deps/sedona_gdal-b63a0a6bdec3d927` (signal: 6, SIGABRT: process abort signal)
```
I'm not sure if this is transient or not but I wanted to log it in case it doesn't pop up again.
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Re: [I] c/sedona-gdal: Possible double free/corruption in sedona-gdal tests [sedona-db]
Posted by "Kontinuation (via GitHub)" <gi...@apache.org>.
Kontinuation closed issue #870: c/sedona-gdal: Possible double free/corruption in sedona-gdal tests
URL: https://github.com/apache/sedona-db/issues/870
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Re: [I] c/sedona-gdal: Possible double free/corruption in sedona-gdal tests [sedona-db]
Posted by "Kontinuation (via GitHub)" <gi...@apache.org>.
Kontinuation commented on issue #870:
URL: https://github.com/apache/sedona-db/issues/870#issuecomment-4604699946
I have reproduced this problem on a GitHub runner. Here are the backtrace of coredumps:
<details>
<summary>Backtrace 1</summary>
```
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib/x86_64-linux-gnu/libthread_db.so.1".
Core was generated by `target/debug/deps/sedona_gdal-08bc50007d011dce --test-threads=16'.
Program terminated with signal SIGABRT, Aborted.
#0 __pthread_kill_implementation (no_tid=0, signo=6, threadid=<optimized out>) at ./nptl/pthread_kill.c:44
warning: 44 ./nptl/pthread_kill.c: No such file or directory
[Current thread is 1 (Thread 0x7f084864e6c0 (LWP 94079))]
warning: Missing auto-load script at offset 0 in section .debug_gdb_scripts
of file /home/runner/work/sedona-db/sedona-db/target/debug/deps/sedona_gdal-08bc50007d011dce.
Use `info auto-load python-scripts [REGEXP]' to list them.
(gdb) bt
#0 __pthread_kill_implementation (no_tid=0, signo=6, threadid=<optimized out>) at ./nptl/pthread_kill.c:44
#1 __pthread_kill_internal (signo=6, threadid=<optimized out>) at ./nptl/pthread_kill.c:78
#2 __GI___pthread_kill (threadid=<optimized out>, signo=signo@entry=6) at ./nptl/pthread_kill.c:89
#3 0x00007f085144527e in __GI_raise (sig=sig@entry=6) at ../sysdeps/posix/raise.c:26
#4 0x00007f08514288ff in __GI_abort () at ./stdlib/abort.c:79
#5 0x00007f08514297b6 in __libc_message_impl (fmt=fmt@entry=0x7f08515ce8d7 "%s\n") at ../sysdeps/posix/libc_fatal.c:134
#6 0x00007f08514a8ff5 in malloc_printerr (str=str@entry=0x7f08515d1c48 "double free or corruption (fasttop)") at ./malloc/malloc.c:5775
#7 0x00007f08514ab32a in _int_free (av=0x7f0824000030, p=<optimized out>, have_lock=0) at ./malloc/malloc.c:4607
#8 0x00007f08514addce in __GI___libc_free (mem=0x7f08240167a0) at ./malloc/malloc.c:3398
#9 0x00007f0851280672 in ?? () from /lib/x86_64-linux-gnu/libxml2.so.2
#10 0x00007f084f2bb00f in ?? () from /lib/x86_64-linux-gnu/libspatialite.so.8
#11 0x00007f084ef118ad in spatialite_cleanup_ex () from /lib/x86_64-linux-gnu/libspatialite.so.8
#12 0x00007f0852677016 in ?? () from /lib/x86_64-linux-gnu/libgdal.so.34
#13 0x00007f08526b0a75 in ?? () from /lib/x86_64-linux-gnu/libgdal.so.34
#14 0x00007f08528381b1 in GDALClose () from /lib/x86_64-linux-gnu/libgdal.so.34
#15 0x0000555eace7011a in sedona_gdal::dataset::{impl#1}::drop () at c/sedona-gdal/src/gdal_api.rs:39
#16 0x0000555eace9a636 in core::ptr::drop_in_place<sedona_gdal::dataset::Dataset> () at /rustc/ac68faa20c58cbccd01ee7208bf3b6e93a7d7f96/library/core/src/ptr/mod.rs:810
#17 0x0000555eaceaab4c in sedona_gdal::raster::polygonize::tests::test_polygonize_with_mask_band_restricts_output::{closure#0} () at c/sedona-gdal/src/raster/polygonize.rs:272
#18 0x0000555eace9359d in sedona_gdal::global::with_global_gdal_api<sedona_gdal::raster::polygonize::tests::test_polygonize_with_mask_band_restricts_output::{closure_env#0}, ()> () at c/sedona-gdal/src/global.rs:204
#19 0x0000555eacea968c in sedona_gdal::raster::polygonize::tests::test_polygonize_with_mask_band_restricts_output () at c/sedona-gdal/src/raster/polygonize.rs:227
#20 0x0000555eaceaabc3 in sedona_gdal::raster::polygonize::tests::test_polygonize_with_mask_band_restricts_output::{closure#0} () at c/sedona-gdal/src/raster/polygonize.rs:219
#21 0x0000555eace98956 in core::ops::function::FnOnce::call_once<sedona_gdal::raster::polygonize::tests::test_polygonize_with_mask_band_restricts_output::{closure_env#0}, ()> () at /rustc/ac68faa20c58cbccd01ee7208bf3b6e93a7d7f96/library/core/src/ops/function.rs:250
#22 0x0000555eacedc6eb in core::ops::function::FnOnce::call_once<fn() -> core::result::Result<(), alloc::string::String>, ()> () at library/core/src/ops/function.rs:250
#23 test::__rust_begin_short_backtrace<core::result::Result<(), alloc::string::String>, fn() -> core::result::Result<(), alloc::string::String>> () at library/test/src/lib.rs:663
#24 0x0000555eacee90bb in test::run_test_in_process::{closure#0} () at library/test/src/lib.rs:686
#25 core::panic::unwind_safe::{impl#23}::call_once<core::result::Result<(), alloc::string::String>, test::run_test_in_process::{closure_env#0}> () at library/core/src/panic/unwind_safe.rs:275
#26 std::panicking::catch_unwind::do_call<core::panic::unwind_safe::AssertUnwindSafe<test::run_test_in_process::{closure_env#0}>, core::result::Result<(), alloc::string::String>> () at library/std/src/panicking.rs:581
#27 std::panicking::catch_unwind<core::result::Result<(), alloc::string::String>, core::panic::unwind_safe::AssertUnwindSafe<test::run_test_in_process::{closure_env#0}>> () at library/std/src/panicking.rs:544
#28 std::panic::catch_unwind<core::panic::unwind_safe::AssertUnwindSafe<test::run_test_in_process::{closure_env#0}>, core::result::Result<(), alloc::string::String>> () at library/std/src/panic.rs:359
#29 test::run_test_in_process () at library/test/src/lib.rs:686
#30 test::run_test::{closure#0} () at library/test/src/lib.rs:607
#31 0x0000555eacee47d4 in test::run_test::{closure#1} () at library/test/src/lib.rs:637
#32 std::sys::backtrace::__rust_begin_short_backtrace<test::run_test::{closure_env#1}, ()> () at library/std/src/sys/backtrace.rs:166
#33 0x0000555eaceebcc2 in std::thread::lifecycle::spawn_unchecked::{closure#1}::{closure#0}<test::run_test::{closure_env#1}, ()> () at library/std/src/thread/lifecycle.rs:91
#34 core::panic::unwind_safe::{impl#23}::call_once<(), std::thread::lifecycle::spawn_unchecked::{closure#1}::{closure_env#0}<test::run_test::{closure_env#1}, ()>> () at library/core/src/panic/unwind_safe.rs:275
#35 std::panicking::catch_unwind::do_call<core::panic::unwind_safe::AssertUnwindSafe<std::thread::lifecycle::spawn_unchecked::{closure#1}::{closure_env#0}<test::run_test::{closure_env#1}, ()>>, ()> () at library/std/src/panicking.rs:581
#36 std::panicking::catch_unwind<(), core::panic::unwind_safe::AssertUnwindSafe<std::thread::lifecycle::spawn_unchecked::{closure#1}::{closure_env#0}<test::run_test::{closure_env#1}, ()>>> () at library/std/src/panicking.rs:544
#37 std::panic::catch_unwind<core::panic::unwind_safe::AssertUnwindSafe<std::thread::lifecycle::spawn_unchecked::{closure#1}::{closure_env#0}<test::run_test::{closure_env#1}, ()>>, ()> () at library/std/src/panic.rs:359
#38 std::thread::lifecycle::spawn_unchecked::{closure#1}<test::run_test::{closure_env#1}, ()> () at library/std/src/thread/lifecycle.rs:89
#39 core::ops::function::FnOnce::call_once<std::thread::lifecycle::spawn_unchecked::{closure_env#1}<test::run_test::{closure_env#1}, ()>, ()> () at library/core/src/ops/function.rs:250
#40 0x0000555eacf53ebf in alloc::boxed::{impl#31}::call_once<(), (dyn core::ops::function::FnOnce<(), Output=()> + core::marker::Send), alloc::alloc::Global> () at library/alloc/src/boxed.rs:2249
#41 std::sys::thread::unix::{impl#2}::new::thread_start () at library/std/src/sys/thread/unix.rs:118
#42 0x00007f085149caa4 in start_thread (arg=<optimized out>) at ./nptl/pthread_create.c:447
#43 0x00007f0851529c6c in clone3 () at ../sysdeps/unix/sysv/linux/x86_64/clone3.S:78
```
</details>
<details>
<summary>Backtrace 2</summary>
```
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib/x86_64-linux-gnu/libthread_db.so.1".
Core was generated by `target/debug/deps/sedona_gdal-08bc50007d011dce --test-threads=16'.
Program terminated with signal SIGABRT, Aborted.
#0 __pthread_kill_implementation (no_tid=0, signo=6, threadid=<optimized out>) at ./nptl/pthread_kill.c:44
warning: 44 ./nptl/pthread_kill.c: No such file or directory
[Current thread is 1 (Thread 0x7f84a8e516c0 (LWP 80797))]
warning: Missing auto-load script at offset 0 in section .debug_gdb_scripts
of file /home/runner/work/sedona-db/sedona-db/target/debug/deps/sedona_gdal-08bc50007d011dce.
Use `info auto-load python-scripts [REGEXP]' to list them.
(gdb) bt
#0 __pthread_kill_implementation (no_tid=0, signo=6, threadid=<optimized out>) at ./nptl/pthread_kill.c:44
#1 __pthread_kill_internal (signo=6, threadid=<optimized out>) at ./nptl/pthread_kill.c:78
#2 __GI___pthread_kill (threadid=<optimized out>, signo=signo@entry=6) at ./nptl/pthread_kill.c:89
#3 0x00007f84b164527e in __GI_raise (sig=sig@entry=6) at ../sysdeps/posix/raise.c:26
#4 0x00007f84b16288ff in __GI_abort () at ./stdlib/abort.c:79
#5 0x00007f84b16297b6 in __libc_message_impl (fmt=fmt@entry=0x7f84b17ce8d7 "%s\n") at ../sysdeps/posix/libc_fatal.c:134
#6 0x00007f84b16a8ff5 in malloc_printerr (str=str@entry=0x7f84b17d1c48 "double free or corruption (fasttop)") at ./malloc/malloc.c:5775
#7 0x00007f84b16ab32a in _int_free (av=0x7f84a4000030, p=<optimized out>, have_lock=0) at ./malloc/malloc.c:4607
#8 0x00007f84b16addce in __GI___libc_free (mem=0x7f84a4005af0) at ./malloc/malloc.c:3398
#9 0x00007f84b14550a6 in xmlCleanupCharEncodingHandlers () from /lib/x86_64-linux-gnu/libxml2.so.2
#10 0x00007f84b14801a2 in ?? () from /lib/x86_64-linux-gnu/libxml2.so.2
#11 0x00007f84af2bb00f in ?? () from /lib/x86_64-linux-gnu/libspatialite.so.8
#12 0x00007f84aef118ad in spatialite_cleanup_ex () from /lib/x86_64-linux-gnu/libspatialite.so.8
#13 0x00007f84b2877016 in ?? () from /lib/x86_64-linux-gnu/libgdal.so.34
#14 0x00007f84b28b0a75 in ?? () from /lib/x86_64-linux-gnu/libgdal.so.34
#15 0x00007f84b2a381b1 in GDALClose () from /lib/x86_64-linux-gnu/libgdal.so.34
#16 0x000056525a63611a in sedona_gdal::dataset::{impl#1}::drop () at c/sedona-gdal/src/gdal_api.rs:39
#17 0x000056525a660636 in core::ptr::drop_in_place<sedona_gdal::dataset::Dataset> () at /rustc/ac68faa20c58cbccd01ee7208bf3b6e93a7d7f96/library/core/src/ptr/mod.rs:810
#18 0x000056525a673b28 in core::mem::drop<sedona_gdal::dataset::Dataset> () at /rustc/ac68faa20c58cbccd01ee7208bf3b6e93a7d7f96/library/core/src/mem/mod.rs:1003
#19 0x000056525a655dd9 in sedona_gdal::vector::layer::tests::test_layer_iteration_and_reset::{closure#0} () at c/sedona-gdal/src/vector/layer.rs:172
#20 0x000056525a65ab0d in sedona_gdal::global::with_global_gdal_api<sedona_gdal::vector::layer::tests::test_layer_iteration_and_reset::{closure_env#0}, ()> () at c/sedona-gdal/src/global.rs:204
#21 0x000056525a65571c in sedona_gdal::vector::layer::tests::test_layer_iteration_and_reset () at c/sedona-gdal/src/vector/layer.rs:139
#22 0x000056525a656ae3 in sedona_gdal::vector::layer::tests::test_layer_iteration_and_reset::{closure#0} () at c/sedona-gdal/src/vector/layer.rs:138
#23 0x000056525a65f1e6 in core::ops::function::FnOnce::call_once<sedona_gdal::vector::layer::tests::test_layer_iteration_and_reset::{closure_env#0}, ()> () at /rustc/ac68faa20c58cbccd01ee7208bf3b6e93a7d7f96/library/core/src/ops/function.rs:250
#24 0x000056525a6a26eb in core::ops::function::FnOnce::call_once<fn() -> core::result::Result<(), alloc::string::String>, ()> () at library/core/src/ops/function.rs:250
#25 test::__rust_begin_short_backtrace<core::result::Result<(), alloc::string::String>, fn() -> core::result::Result<(), alloc::string::String>> () at library/test/src/lib.rs:663
#26 0x000056525a6af0bb in test::run_test_in_process::{closure#0} () at library/test/src/lib.rs:686
#27 core::panic::unwind_safe::{impl#23}::call_once<core::result::Result<(), alloc::string::String>, test::run_test_in_process::{closure_env#0}> () at library/core/src/panic/unwind_safe.rs:275
#28 std::panicking::catch_unwind::do_call<core::panic::unwind_safe::AssertUnwindSafe<test::run_test_in_process::{closure_env#0}>, core::result::Result<(), alloc::string::String>> () at library/std/src/panicking.rs:581
#29 std::panicking::catch_unwind<core::result::Result<(), alloc::string::String>, core::panic::unwind_safe::AssertUnwindSafe<test::run_test_in_process::{closure_env#0}>> () at library/std/src/panicking.rs:544
#30 std::panic::catch_unwind<core::panic::unwind_safe::AssertUnwindSafe<test::run_test_in_process::{closure_env#0}>, core::result::Result<(), alloc::string::String>> () at library/std/src/panic.rs:359
#31 test::run_test_in_process () at library/test/src/lib.rs:686
#32 test::run_test::{closure#0} () at library/test/src/lib.rs:607
#33 0x000056525a6aa7d4 in test::run_test::{closure#1} () at library/test/src/lib.rs:637
#34 std::sys::backtrace::__rust_begin_short_backtrace<test::run_test::{closure_env#1}, ()> () at library/std/src/sys/backtrace.rs:166
#35 0x000056525a6b1cc2 in std::thread::lifecycle::spawn_unchecked::{closure#1}::{closure#0}<test::run_test::{closure_env#1}, ()> () at library/std/src/thread/lifecycle.rs:91
#36 core::panic::unwind_safe::{impl#23}::call_once<(), std::thread::lifecycle::spawn_unchecked::{closure#1}::{closure_env#0}<test::run_test::{closure_env#1}, ()>> () at library/core/src/panic/unwind_safe.rs:275
#37 std::panicking::catch_unwind::do_call<core::panic::unwind_safe::AssertUnwindSafe<std::thread::lifecycle::spawn_unchecked::{closure#1}::{closure_env#0}<test::run_test::{closure_env#1}, ()>>, ()> () at library/std/src/panicking.rs:581
#38 std::panicking::catch_unwind<(), core::panic::unwind_safe::AssertUnwindSafe<std::thread::lifecycle::spawn_unchecked::{closure#1}::{closure_env#0}<test::run_test::{closure_env#1}, ()>>> () at library/std/src/panicking.rs:544
#39 std::panic::catch_unwind<core::panic::unwind_safe::AssertUnwindSafe<std::thread::lifecycle::spawn_unchecked::{closure#1}::{closure_env#0}<test::run_test::{closure_env#1}, ()>>, ()> () at library/std/src/panic.rs:359
#40 std::thread::lifecycle::spawn_unchecked::{closure#1}<test::run_test::{closure_env#1}, ()> () at library/std/src/thread/lifecycle.rs:89
#41 core::ops::function::FnOnce::call_once<std::thread::lifecycle::spawn_unchecked::{closure_env#1}<test::run_test::{closure_env#1}, ()>, ()> () at library/core/src/ops/function.rs:250
#42 0x000056525a719ebf in alloc::boxed::{impl#31}::call_once<(), (dyn core::ops::function::FnOnce<(), Output=()> + core::marker::Send), alloc::alloc::Global> () at library/alloc/src/boxed.rs:2249
#43 std::sys::thread::unix::{impl#2}::new::thread_start () at library/std/src/sys/thread/unix.rs:118
#44 0x00007f84b169caa4 in start_thread (arg=<optimized out>) at ./nptl/pthread_create.c:447
#45 0x00007f84b1729c6c in clone3 () at ../sysdeps/unix/sysv/linux/x86_64/clone3.S:78
(gdb)https://github.com/OSGeo/gdal/pull/10687
```
</details>
<details>
<summary>Backtrace 3</summary>
```
warning: 44 ./nptl/pthread_kill.c: No such file or directory
[Current thread is 1 (Thread 0x7f33e1a596c0 (LWP 131224))]
warning: Missing auto-load script at offset 0 in section .debug_gdb_scripts
of file /home/runner/work/sedona-db/sedona-db/target/debug/deps/sedona_gdal-08bc50007d011dce.
Use `info auto-load python-scripts [REGEXP]' to list them.
(gdb) bt
#0 __pthread_kill_implementation (no_tid=0, signo=6, threadid=<optimized out>) at ./nptl/pthread_kill.c:44
#1 __pthread_kill_internal (signo=6, threadid=<optimized out>) at ./nptl/pthread_kill.c:78
#2 __GI___pthread_kill (threadid=<optimized out>, signo=signo@entry=6) at ./nptl/pthread_kill.c:89
#3 0x00007f33e924527e in __GI_raise (sig=sig@entry=6) at ../sysdeps/posix/raise.c:26
#4 0x00007f33e92288ff in __GI_abort () at ./stdlib/abort.c:79
#5 0x00007f33e92297b6 in __libc_message_impl (fmt=fmt@entry=0x7f33e93ce8d7 "%s\n") at ../sysdeps/posix/libc_fatal.c:134
#6 0x00007f33e92a8ff5 in malloc_printerr (str=str@entry=0x7f33e93d1c48 "double free or corruption (fasttop)") at ./malloc/malloc.c:5775
#7 0x00007f33e92ab32a in _int_free (av=0x7f33d8000030, p=<optimized out>, have_lock=0) at ./malloc/malloc.c:4607
#8 0x00007f33e92addce in __GI___libc_free (mem=0x7f33d8096a90) at ./malloc/malloc.c:3398
#9 0x00007f33e8f940a6 in xmlCleanupCharEncodingHandlers () from /lib/x86_64-linux-gnu/libxml2.so.2
#10 0x00007f33e8fbf1a2 in ?? () from /lib/x86_64-linux-gnu/libxml2.so.2
#11 0x00007f33e6ebb00f in ?? () from /lib/x86_64-linux-gnu/libspatialite.so.8
#12 0x00007f33e6b118ad in spatialite_cleanup_ex () from /lib/x86_64-linux-gnu/libspatialite.so.8
#13 0x00007f33ea477016 in ?? () from /lib/x86_64-linux-gnu/libgdal.so.34
#14 0x00007f33ea4b0a75 in ?? () from /lib/x86_64-linux-gnu/libgdal.so.34
#15 0x00007f33ea6381b1 in GDALClose () from /lib/x86_64-linux-gnu/libgdal.so.34
#16 0x0000560d2191911a in sedona_gdal::dataset::{impl#1}::drop () at c/sedona-gdal/src/gdal_api.rs:39
#17 0x0000560d219466e6 in core::ptr::drop_in_place<sedona_gdal::dataset::Dataset> () at /rustc/ac68faa20c58cbccd01ee7208bf3b6e93a7d7f96/library/core/src/ptr/mod.rs:810
#18 0x0000560d21958bc8 in core::mem::drop<sedona_gdal::dataset::Dataset> () at /rustc/ac68faa20c58cbccd01ee7208bf3b6e93a7d7f96/library/core/src/mem/mod.rs:1003
#19 0x0000560d21963115 in sedona_gdal::dataset::tests::test_create_vector_layer::{closure#0} () at c/sedona-gdal/src/dataset.rs:456
#20 0x0000560d219425dd in sedona_gdal::global::with_global_gdal_api<sedona_gdal::dataset::tests::test_create_vector_layer::{closure_env#0}, ()> () at c/sedona-gdal/src/global.rs:204
#21 0x0000560d21962b8c in sedona_gdal::dataset::tests::test_create_vector_layer () at c/sedona-gdal/src/dataset.rs:437
#22 0x0000560d21963263 in sedona_gdal::dataset::tests::test_create_vector_layer::{closure#0} () at c/sedona-gdal/src/dataset.rs:436
#23 0x0000560d21944876 in core::ops::function::FnOnce::call_once<sedona_gdal::dataset::tests::test_create_vector_layer::{closure_env#0}, ()> () at /rustc/ac68faa20c58cbccd01ee7208bf3b6e93a7d7f96/library/core/src/ops/function.rs:250
#24 0x0000560d2198587b in core::ops::function::FnOnce::call_once<fn() -> core::result::Result<(), alloc::string::String>, ()> () at library/core/src/ops/function.rs:250
#25 test::__rust_begin_short_backtrace<core::result::Result<(), alloc::string::String>, fn() -> core::result::Result<(), alloc::string::String>> () at library/test/src/lib.rs:663
#26 0x0000560d2199224b in test::run_test_in_process::{closure#0} () at library/test/src/lib.rs:686
#27 core::panic::unwind_safe::{impl#23}::call_once<core::result::Result<(), alloc::string::String>, test::run_test_in_process::{closure_env#0}> () at library/core/src/panic/unwind_safe.rs:275
#28 std::panicking::catch_unwind::do_call<core::panic::unwind_safe::AssertUnwindSafe<test::run_test_in_process::{closure_env#0}>, core::result::Result<(), alloc::string::String>> () at library/std/src/panicking.rs:581
#29 std::panicking::catch_unwind<core::result::Result<(), alloc::string::String>, core::panic::unwind_safe::AssertUnwindSafe<test::run_test_in_process::{closure_env#0}>> () at library/std/src/panicking.rs:544
#30 std::panic::catch_unwind<core::panic::unwind_safe::AssertUnwindSafe<test::run_test_in_process::{closure_env#0}>, core::result::Result<(), alloc::string::String>> () at library/std/src/panic.rs:359
#31 test::run_test_in_process () at library/test/src/lib.rs:686
#32 test::run_test::{closure#0} () at library/test/src/lib.rs:607
#33 0x0000560d2198d964 in test::run_test::{closure#1} () at library/test/src/lib.rs:637
#34 std::sys::backtrace::__rust_begin_short_backtrace<test::run_test::{closure_env#1}, ()> () at library/std/src/sys/backtrace.rs:166
#35 0x0000560d21994e52 in std::thread::lifecycle::spawn_unchecked::{closure#1}::{closure#0}<test::run_test::{closure_env#1}, ()> () at library/std/src/thread/lifecycle.rs:91
#36 core::panic::unwind_safe::{impl#23}::call_once<(), std::thread::lifecycle::spawn_unchecked::{closure#1}::{closure_env#0}<test::run_test::{closure_env#1}, ()>> () at library/core/src/panic/unwind_safe.rs:275
#37 std::panicking::catch_unwind::do_call<core::panic::unwind_safe::AssertUnwindSafe<std::thread::lifecycle::spawn_unchecked::{closure#1}::{closure_env#0}<test::run_test::{closure_env#1}, ()>>, ()> () at library/std/src/panicking.rs:581
#38 std::panicking::catch_unwind<(), core::panic::unwind_safe::AssertUnwindSafe<std::thread::lifecycle::spawn_unchecked::{closure#1}::{closure_env#0}<test::run_test::{closure_env#1}, ()>>> () at library/std/src/panicking.rs:544
#39 std::panic::catch_unwind<core::panic::unwind_safe::AssertUnwindSafe<std::thread::lifecycle::spawn_unchecked::{closure#1}::{closure_env#0}<test::run_test::{closure_env#1}, ()>>, ()> () at library/std/src/panic.rs:359
#40 std::thread::lifecycle::spawn_unchecked::{closure#1}<test::run_test::{closure_env#1}, ()> () at library/std/src/thread/lifecycle.rs:89
#41 core::ops::function::FnOnce::call_once<std::thread::lifecycle::spawn_unchecked::{closure_env#1}<test::run_test::{closure_env#1}, ()>, ()> () at library/core/src/ops/function.rs:250
#42 0x0000560d219fd04f in alloc::boxed::{impl#31}::call_once<(), (dyn core::ops::function::FnOnce<(), Output=()> + core::marker::Send), alloc::alloc::Global> () at library/alloc/src/boxed.rs:2249
#43 std::sys::thread::unix::{impl#2}::new::thread_start () at library/std/src/sys/thread/unix.rs:118
#44 0x00007f33e929caa4 in start_thread (arg=<optimized out>) at ./nptl/pthread_create.c:447
#45 0x00007f33e9329c6c in clone3 () at ../sysdeps/unix/sysv/linux/x86_64/clone3.S:78
(gdb)
```
</details>
Looks like all crashes happen when calling `GDALClose` on GPKG-backed GDAL datasets. I tried to serialize all tests involving GPKG datasets and the problem has gone.
I found that there's already a GDAL ticket describing the same problem https://github.com/OSGeo/gdal/issues/10685 and there's a fix https://github.com/OSGeo/gdal/pull/10687 . The minimum released GDAL version with the fix is 3.9.3. Our GitHub runner's GDAL version 3.8.4 definitely missed it, that's why we hit this problem.
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Re: [I] c/sedona-gdal: Possible double free/corruption in sedona-gdal tests [sedona-db]
Posted by "paleolimbot (via GitHub)" <gi...@apache.org>.
paleolimbot commented on issue #870:
URL: https://github.com/apache/sedona-db/issues/870#issuecomment-4605166023
Thank you for tracking that down! We could possibly also just use `.fgb` instead of `.gpkg` for those tests.
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Re: [I] c/sedona-gdal: Possible double free/corruption in sedona-gdal tests [sedona-db]
Posted by "paleolimbot (via GitHub)" <gi...@apache.org>.
paleolimbot commented on issue #870:
URL: https://github.com/apache/sedona-db/issues/870#issuecomment-4595597690
@james-willis @Kontinuation this appears to keep happening. I first noticed after one of James' PRs merged but I have a feeling we've just merged more PRs since then so I've been noticing more frequently. This is ephemeral, so possibly due to uninitialized memory or threading.
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