You are viewing a plain text version of this content. The canonical link for it is here.
Posted to commits@mxnet.apache.org by GitBox <gi...@apache.org> on 2020/08/23 02:16:37 UTC
[GitHub] [incubator-mxnet] beew opened a new issue #18985: unable to build r packge
beew opened a new issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985
## Description
It seems that I can't really get any consistent documentation on how to build the r package for mxnet with gpu. I have already successfully built mxnet with this command and the python package
```
make -j8 USE_OPENCV=1 USE_BLAS=openblasl USE_CUDA=1 USE_CUDA_PATH=/usr/local/cuda USE_CUDNN=1 CUDA_ARCH=-gencode=arch=compute_61,code=sm_61 USE_JEMALLOC=1
```
But there is little info on what to do next to install (and make ) the r package (or anything else besides python for that matter)
Almost everything I found is about installing the mxnet-r binary and the README sends me to this page which is supposed to tell you how to install from source only talks about python https://mxnet.apache.org/versions/1.6/get_started/build_from_source#install-the-mxnet-package-for-r
The closest I can find is this but it doesn't work
https://mxnet.apache.org/versions/1.4.1/install/ubuntu_setup.html#install-the-mxnet-package-for-r
First of all it says
```
make rpkg
```
but it doesn't tell you running it from where. It doesn't work in mxnet's root
```
Makefile:358: WARNING: Significant performance increases can be achieved by installing and enabling gperftools or jemalloc development packages
Makefile:692: warning: overriding recipe for target 'build/libcustomop_gpu_lib.so'
Makefile:680: warning: ignoring old recipe for target 'build/libcustomop_gpu_lib.so'
Makefile:695: warning: overriding recipe for target 'build/libsubgraph_lib.so'
Makefile:683: warning: ignoring old recipe for target 'build/libsubgraph_lib.so'
make: *** No rule to make target 'rpkg'. Stop.
```
and it doesn't work if run in the R-package directory
```
make rpkg
mkdir -p R-package/inst/libs
cp src/io/image_recordio.h R-package/src
cp: cannot stat 'src/io/image_recordio.h': No such file or directory
Makefile:5: recipe for target 'rpkg' failed
```
So it appears that this makefile in R-package should be one level up. So I copy it to mxnet root and backed up the original make file there
```
make rpkg
mkdir -p R-package/inst/libs
cp src/io/image_recordio.h R-package/src
if [ -d "lib" ]; then \
cp -rf lib/libmxnet.so R-package/inst/libs; \
if [ -e "lib/libtvm_runtime.so" ]; then \
cp -rf lib/libtvm_runtime.so R-package/inst/libs; \
fi; \
else \
cp -rf build/libmxnet.so R-package/inst/libs; \
if [ -e "build/libtvm_runtime.so" ]; then \
cp -rf build/libtvm_runtime.so R-package/inst/libs; \
fi; \
fi
mkdir -p R-package/inst/include
cp -rl include/* R-package/inst/include
Rscript -e "if(!require(devtools)){install.packages('devtools', repo = 'https://cloud.r-project.org/')}"
Loading required package: devtools
Loading required package: usethis
Rscript -e "if(!require(roxygen2)||packageVersion('roxygen2') < '6.1.1'){install.packages('roxygen2', repo = 'https://cloud.r-project.org/')}"
Loading required package: roxygen2
Rscript -e "library(devtools); library(methods); options(repos=c(CRAN='https://cloud.r-project.org/')); install_deps(pkg='R-package', dependencies = TRUE)"
Loading required package: usethis
Error: Can't find 'R-package'.
Execution halted
Makefile:5: recipe for target 'rpkg' failed
```
Am I missing something?
R 4.0.2 Ubuntu 16.04
## To Reproduce
(If you developed your own code, please provide a short script that reproduces the error. For existing examples, please provide link.)
### Steps to reproduce
(Paste the commands you ran that produced the error.)
1.
2.
## What have you tried to solve it?
1.
2.
## Environment
We recommend using our script for collecting the diagnositc information. Run the following command and paste the outputs below:
```
curl --retry 10 -s https://raw.githubusercontent.com/dmlc/gluon-nlp/master/tools/diagnose.py | python
# paste outputs here
```
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] hetong007 commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
hetong007 commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-682419310
I did the following on my Ubuntu to install the CPU-version MXNet, could you please help to follow and verify:
First, clone MXNet by `git clone --recursive https://github.com/apache/incubator-mxnet.git -b 1.6.0`.
Then, Compile with `cmake`:
```sh
cd $MXNET_ROOT # go into your cloned repo
make build && cd build
cmake -DUSE_CUDA=OFF ..
make -j16
```
I believe you have been here already. So the R part is the following.
I have to modify two files first, please see the diff info below:
```diff
diff --git a/Makefile b/Makefile
index 4746cc434..0ec177232 100644
--- a/Makefile
+++ b/Makefile
@@ -707,6 +707,7 @@ rpkg:
R CMD INSTALL R-package
Rscript -e "require(mxnet); mxnet:::mxnet.export('R-package'); warnings()"
rm R-package/NAMESPACE
+ touch R-package/NAMESPACE
Rscript -e "devtools::document('R-package');warnings()"
R CMD INSTALL R-package
diff --git a/R-package/R/zzz.R b/R-package/R/zzz.R
index a4f03ace0..1a421f1d4 100644
--- a/R-package/R/zzz.R
+++ b/R-package/R/zzz.R
@@ -34,6 +34,7 @@ NULL
.onLoad <- function(libname, pkgname) {
# Require methods for older versions of R
require(methods)
+ require(Rcpp)
tryCatch(library.dynam("libmxnet", pkgname, libname, local=FALSE), error = function(e) { print('Loading local: inst/libs/libmxnet.so'); dyn.load("R-package/inst/libs/libmxnet.so", local=FALSE) })
tryCatch(library.dynam("mxnet", pkgname, libname), error = function(e) { print('Loading local: src/mxnet.so'); dyn.load("R-package/src/mxnet.so") })
loadModule("mxnet", TRUE)
```
Finally, under your $MXNET_ROOT, run `make rpkg`.
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] szha commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
szha commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-678733568
cc @hetong007
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] beew commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
beew commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683362978
It breaks here
```
Rscript -e "library(devtools); library(methods); options(repos=c(CRAN='https://cloud.r-project.org/')); install_deps(pkg='R-package', dependencies = TRUE)"
Loading required package: usethis
Error: Can't find 'R-package'.
Execution halted
```
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] hetong007 commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
hetong007 commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683363170
If you start `R` and execute them in the console, do you still get the same error?
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] szha edited a comment on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
szha edited a comment on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683384987
> > is there a way to build the R package with the libmxnet.so in pip packages?
>
> In theory you can simply replace this line: https://github.com/apache/incubator-mxnet/blob/1.6.0/Makefile#L690. But seems 1.7.0 has major changes in `Makefile` so I'm not sure how to work with that now.
You can find this section here: https://github.com/apache/incubator-mxnet/blob/7a84fe11dd7399d1c2bdd0fb679c46af69e48861/R-package/Makefile#L4-L17
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] beew commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
beew commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683310941
Hi
```
git status
On branch v1.6
Your branch is up to date with 'origin/v1.6.x'.
Changes not staged for commit:
(use "git add <file>..." to update what will be committed)
(use "git restore <file>..." to discard changes in working directory)
modified: Makefile
modified: R-package/R/zzz.R
Untracked files:
(use "git add <file>..." to include in what will be committed)
Makefile.orig
Makefile.rej
R-package/R/zzz.R.orig
R-package/R/zzz.R.rej
R-package/src/image_recordio.h
no changes added to commit (use "git add" and/or "git commit -a")
```
I can indeed see R-packge
```
:~/opt/mxnet$ ls | grep R-package
R-package
```
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] beew commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
beew commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683524076
> As mentioned above, the `rpkg` part lies in the `R-package/Makefile`. You can probably copy the file to `$MXNET_ROOT` and then `make rkpg`.
>
It finally works!
There is one small issue, it complains that opencv.pc not found because the file is called opencv4.pc in Ubuntu 20.04 (from libopencv-dev) The fix is to create a symlink
```
sudo ln -s /usr/lib/x86_64-linux-gnu/pkgconfig/opencv4.pc /usr/lib/x86_64-linux-gnu/pkgconfig/opencv.pc
```
Thanks @hetong007 for the help!
I think there should be better documentation on how to compile the r module (and perhaps everything else besides python) Rightnow all the public sources appear to be useless.
Thanks again.
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
---------------------------------------------------------------------
To unsubscribe, e-mail: issues-unsubscribe@mxnet.apache.org
For additional commands, e-mail: issues-help@mxnet.apache.org
[GitHub] [incubator-mxnet] beew edited a comment on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
beew edited a comment on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683368886
It took a while, the Rpackage not found issue is solved but I got another error
```
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-5iUtQS/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c export.cc -o export.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-5iUtQS/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c im2rec.cc -o im2rec.o
im2rec.cc:39:10: fatal error: opencv2/opencv.hpp: No such file or directory
39 | #include <opencv2/opencv.hpp>
```
but I have already installed libopencv-dev and opencv2/opencv.hpp is in
/usr/include/opencv4/opencv2/opencv.hpp
Should I just make a symlink of /usr/include/opencv4/opencv2/ to /usr/local/include/opencv2?
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] beew edited a comment on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
beew edited a comment on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683364893
```
> sessionInfo()
R version 4.0.2 (2020-06-22)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.1 LTS
Matrix products: default
BLAS/LAPACK: /usr/lib/x86_64-linux-gnu/libmkl_rt.so
locale:
[1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_CA.UTF-8 LC_COLLATE=en_CA.UTF-8
[5] LC_MONETARY=en_CA.UTF-8 LC_MESSAGES=en_CA.UTF-8
[7] LC_PAPER=en_CA.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] devtools_2.3.1 usethis_1.6.1
loaded via a namespace (and not attached):
[1] prettyunits_1.1.1 ps_1.3.4 fansi_0.4.1 rprojroot_1.3-2
[5] withr_2.2.0 digest_0.6.25 crayon_1.3.4 assertthat_0.2.1
[9] R6_2.4.1 backports_1.1.9 magrittr_1.5 rlang_0.4.7
[13] cli_2.0.2 remotes_2.2.0 fs_1.5.0 testthat_2.3.2
[17] callr_3.4.3 ellipsis_0.3.1 desc_1.2.0 tools_4.0.2
[21] glue_1.4.2 pkgload_1.1.0 compiler_4.0.2 processx_3.4.3
[25] pkgbuild_1.1.0 sessioninfo_1.1.1 memoise_1.1.0
> list.files()
[1] "acas" "cairoR2.R"
[3] "cairotest.R" "CMHAcomplete-v27.sav"
[5] "combinelmeroutputs.R" "csdtest.R"
[7] "csdwebtest.R" "experiments"
[9] "Feast" "funclib.R"
[11] "graphdata.R" "gridtest.R"
[13] "growthcurve" "imortdata.R"
[15] "importSPSS.R" "lib"
[17] "Lin" "LMM_Examples.R"
[19] "machine_learning" "MakeVars.R"
[21] "MathemaTIC" "medical"
[23] "medical_record" "mentalabacus-master.zip"
[25] "ML" "multi"
[27] "nvblas.log" "OUTPUTS"
[29] "plumlytics" "pqR"
[31] "RAnalyticFlow" "random_notes_and_exercises.R"
[33] "rooksource.R~" "RookTutorial"
[35] "RookTutorial.R" "simulation_book.R"
[37] "speech_recognition" "tempcsv.R"
[39] "test.R" "testdata"
[41] "testout" "textmining-exercises"
[43] "time.to.event.sample.R" "to do"
[45] "Venndiagrams.R" "winbugs_tests"
[47] "x86_64-pc-linux-gnu-library" "YeeHong"
> getwd()
[1] "/home/bee/R"
```
Ok I setwd('/home/bee/R') is that an issue since some packages assumes it is $HOME?
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] hetong007 commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
hetong007 commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683502207
As mentioned above, the `rpkg` part lies in the `R-package/Makefile`. You can probably copy the file to `$MXNET_ROOT` and then `make rkpg`.
If that doesn't work, @leezu Would you mind to show how to make with this target?
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] hetong007 commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
hetong007 commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683364177
In the same R console, what are the outputs from these commands:
```
sessionInfo()
list.files()
getwd()
```
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] hetong007 commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
hetong007 commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683365197
> Ok I setwd('/home/bee/R') in .Rprofile is that an issue since some packages assumes it is $HOME?
Just saw this line. Yes, that is very likely to be the cause. Please remove this line and try `make rpkg`.
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] beew commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
beew commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683370711
So I fixed the above by
export CPATH=usr/include/opencv4
But then
```
im2rec.cc:172:29: error: ‘CV_IMWRITE_PNG_COMPRESSION’ was not declared in this scope
172 | encode_params.push_back(CV_IMWRITE_PNG_COMPRESSION);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
im2rec.cc:176:29: error: ‘CV_IMWRITE_JPEG_QUALITY’ was not declared in this scope
176 | encode_params.push_back(CV_IMWRITE_JPEG_QUALITY);
```
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] beew edited a comment on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
beew edited a comment on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683300248
@hetong007
Didn't work
```
make rpkg
Makefile:227: "USE_LAPACK disabled because libraries were not found"
Makefile:355: WARNING: Significant performance increases can be achieved by installing and enabling gperftools or jemalloc development packages
mkdir -p R-package/inst/libs
cp src/io/image_recordio.h R-package/src
cp -rf lib/libmxnet.so R-package/inst/libs
if [ -e "lib/libdnnl.so.1" ]; then \
cp -rf lib/libdnnl.so.1 R-package/inst/libs; \
fi
if [ -e "lib/libtvm_runtime.so" ]; then \
cp -rf lib/libtvm_runtime.so R-package/inst/libs; \
fi
mkdir -p R-package/inst/include
cp -rl include/* R-package/inst/include
Rscript -e "if(!require(devtools)){install.packages('devtools', repo = 'https://cloud.r-project.org/')}"
Loading required package: devtools
Loading required package: usethis
Rscript -e "if(!require(roxygen2)||packageVersion('roxygen2') < '6.1.1'){install.packages('roxygen2', repo = 'https://cloud.r-project.org/')}"
Loading required package: roxygen2
Rscript -e "library(devtools); library(methods); options(repos=c(CRAN='https://cloud.r-project.org/')); install_deps(pkg='R-package', dependencies = TRUE)"
Loading required package: usethis
Error: Can't find 'R-package'.
Execution halted
make: *** [Makefile:697: rpkg] Error 1
```
my makefile (in mxnet root) now looks like this
```
R CMD INSTALL R-package
Rscript -e "require(mxnet); mxnet:::mxnet.export('R-package'); warnings()"
touch R-package/NAMESPACE
Rscript -e "devtools::document('R-package');warnings()"
R CMD INSTALL R-package
``
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] hetong007 commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
hetong007 commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683309386
Your error message looks like that the path `R-package` doesn't exist, and which shouldn't be. That might because you have cloned a different version, or your folder has been modified unexpectedly.
1. Could you show me the output of `git status` under `$MXNET_ROOT`
2. Instead of `make rpkg`, could you manually execute [these commands](https://github.com/apache/incubator-mxnet/blob/1.6.0/Makefile#L687-L711) in your `$MXNET_ROOT` **line-by-line** in your console?
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] beew edited a comment on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
beew edited a comment on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683305083
It is branch 1.6.0
```
python
Python 3.7.9 (default, Aug 24 2020, 16:50:14)
[GCC 9.3.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import mxnet
>>> mxnet.__version__
'1.6.0'
>>>
```
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] beew commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
beew commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683363792
Execute what in R? Those aren't R codes.
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] leezu commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
leezu commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683508917
@beew If you use 1.7, please follow the documentation as contained in https://github.com/apache/incubator-mxnet/commit/9f2e73f39b405ec24cab254076f964452382c224
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
---------------------------------------------------------------------
To unsubscribe, e-mail: issues-unsubscribe@mxnet.apache.org
For additional commands, e-mail: issues-help@mxnet.apache.org
[GitHub] [incubator-mxnet] beew commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
beew commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683368886
It took a while, the Rpackage not found issue is solved but I got another error
``
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-5iUtQS/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c export.cc -o export.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-5iUtQS/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c im2rec.cc -o im2rec.o
im2rec.cc:39:10: fatal error: opencv2/opencv.hpp: No such file or directory
39 | #include <opencv2/opencv.hpp>
```
but I have already installed libopencv-dev and opencv2/opencv.hpp is in
/usr/include/opencv4/opencv2/opencv.hpp
Should I just make a symlink to of /usr/include/opencv4/opencv2/ to /usr/local/include/opencv2?
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] beew commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
beew commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683300248
@hetong007
Didn't work
```
make rpkg
Makefile:227: "USE_LAPACK disabled because libraries were not found"
Makefile:355: WARNING: Significant performance increases can be achieved by installing and enabling gperftools or jemalloc development packages
mkdir -p R-package/inst/libs
cp src/io/image_recordio.h R-package/src
cp -rf lib/libmxnet.so R-package/inst/libs
if [ -e "lib/libdnnl.so.1" ]; then \
cp -rf lib/libdnnl.so.1 R-package/inst/libs; \
fi
if [ -e "lib/libtvm_runtime.so" ]; then \
cp -rf lib/libtvm_runtime.so R-package/inst/libs; \
fi
mkdir -p R-package/inst/include
cp -rl include/* R-package/inst/include
Rscript -e "if(!require(devtools)){install.packages('devtools', repo = 'https://cloud.r-project.org/')}"
Loading required package: devtools
Loading required package: usethis
Rscript -e "if(!require(roxygen2)||packageVersion('roxygen2') < '6.1.1'){install.packages('roxygen2', repo = 'https://cloud.r-project.org/')}"
Loading required package: roxygen2
Rscript -e "library(devtools); library(methods); options(repos=c(CRAN='https://cloud.r-project.org/')); install_deps(pkg='R-package', dependencies = TRUE)"
Loading required package: usethis
Error: Can't find 'R-package'.
Execution halted
make: *** [Makefile:697: rpkg] Error 1
```
my makefile (in mxnet root) now looks like this
```
R CMD INSTALL R-package
Rscript -e "require(mxnet); mxnet:::mxnet.export('R-package'); warnings()"
touch R-package/NAMESPACE
Rscript -e "devtools::document('R-package');warnings()"
R CMD INSTALL R-package
``
and
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] hetong007 commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
hetong007 commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683361712
Have you tried to execute the commands line-by-line here: https://github.com/apache/incubator-mxnet/blob/1.6.0/Makefile#L687-L711 ?
According to your error message, it breaks at `install_deps(pkg='R-package', dependencies = TRUE)`, and by manual execution we could simulate the environment right before this line and we debug from there.
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] leezu commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
leezu commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683371879
@beew note that https://github.com/apache/incubator-mxnet/commit/9f2e73f39b405ec24cab254076f964452382c224 contains fixes for the R package and OpenCV 4. I recommend you use MXNet 1.7 which contains this commit
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] hetong007 commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
hetong007 commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683365135
From these outputs, your `R` is not started under `$MXNET_ROOT`, then no doubt that `install_deps(pkg='R-package', dependencies = TRUE)` can't find the folder `R-package`.
Would you start `R` in `$MXNET_ROOT` and run the following again:
```
sessionInfo()
list.files()
getwd()
```
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] hetong007 commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
hetong007 commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683363889
These are R codes:
```
library(devtools)
library(methods)
options(repos=c(CRAN='https://cloud.r-project.org/'))
install_deps(pkg='R-package', dependencies = TRUE)
```
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] beew edited a comment on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
beew edited a comment on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683364893
```
> sessionInfo()
R version 4.0.2 (2020-06-22)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.1 LTS
Matrix products: default
BLAS/LAPACK: /usr/lib/x86_64-linux-gnu/libmkl_rt.so
locale:
[1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_CA.UTF-8 LC_COLLATE=en_CA.UTF-8
[5] LC_MONETARY=en_CA.UTF-8 LC_MESSAGES=en_CA.UTF-8
[7] LC_PAPER=en_CA.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] devtools_2.3.1 usethis_1.6.1
loaded via a namespace (and not attached):
[1] prettyunits_1.1.1 ps_1.3.4 fansi_0.4.1 rprojroot_1.3-2
[5] withr_2.2.0 digest_0.6.25 crayon_1.3.4 assertthat_0.2.1
[9] R6_2.4.1 backports_1.1.9 magrittr_1.5 rlang_0.4.7
[13] cli_2.0.2 remotes_2.2.0 fs_1.5.0 testthat_2.3.2
[17] callr_3.4.3 ellipsis_0.3.1 desc_1.2.0 tools_4.0.2
[21] glue_1.4.2 pkgload_1.1.0 compiler_4.0.2 processx_3.4.3
[25] pkgbuild_1.1.0 sessioninfo_1.1.1 memoise_1.1.0
> list.files()
[1] "acas" "cairoR2.R"
[3] "cairotest.R" "CMHAcomplete-v27.sav"
[5] "combinelmeroutputs.R" "csdtest.R"
[7] "csdwebtest.R" "experiments"
[9] "Feast" "funclib.R"
[11] "graphdata.R" "gridtest.R"
[13] "growthcurve" "imortdata.R"
[15] "importSPSS.R" "lib"
[17] "Lin" "LMM_Examples.R"
[19] "machine_learning" "MakeVars.R"
[21] "MathemaTIC" "medical"
[23] "medical_record" "mentalabacus-master.zip"
[25] "ML" "multi"
[27] "nvblas.log" "OUTPUTS"
[29] "plumlytics" "pqR"
[31] "RAnalyticFlow" "random_notes_and_exercises.R"
[33] "rooksource.R~" "RookTutorial"
[35] "RookTutorial.R" "simulation_book.R"
[37] "speech_recognition" "tempcsv.R"
[39] "test.R" "testdata"
[41] "testout" "textmining-exercises"
[43] "time.to.event.sample.R" "to do"
[45] "Venndiagrams.R" "winbugs_tests"
[47] "x86_64-pc-linux-gnu-library" "YeeHong"
> getwd()
[1] "/home/bee/R"
```
Ok I setwd('/home/bee/R') in .Rprofile is that an issue since some packages assumes it is $HOME?
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] beew commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
beew commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683364021
The last line produces
```
Error: Can't find 'R-package'.
```
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] szha commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
szha commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683386445
> @szha But isn't it confusing to have the relative path like `R-package/inst/libs` in this file?
I'm not sure what the expectation is with this Makefile. @leezu probably knows better.
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] hetong007 commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
hetong007 commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683302194
Make sure you cloned the branch `1.6.0` or `v1.x`. I believe the current `master` branch is undergoing some major change and the folder `R-package` is currently removed.
To clone a specific branch, use
```git
git clone --recursive https://github.com/apache/incubator-mxnet.git -b 1.6.0
```
or
```git
git clone --recursive https://github.com/apache/incubator-mxnet.git -b v1.x
```
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] szha commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
szha commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683371766
@hetong007 is there a way to build the R package with the libmxnet.so in pip packages?
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] beew edited a comment on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
beew edited a comment on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683368886
It took a while, the R-package not found issue is solved but I got another error
```
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-5iUtQS/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c export.cc -o export.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-5iUtQS/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c im2rec.cc -o im2rec.o
im2rec.cc:39:10: fatal error: opencv2/opencv.hpp: No such file or directory
39 | #include <opencv2/opencv.hpp>
```
but I have already installed libopencv-dev and opencv2/opencv.hpp is in
/usr/include/opencv4/opencv2/opencv.hpp
Should I just make a symlink of /usr/include/opencv4/opencv2/ to /usr/local/include/opencv2?
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] hetong007 commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
hetong007 commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683383656
> is there a way to build the R package with the libmxnet.so in pip packages?
In theory you can simply replace this line: https://github.com/apache/incubator-mxnet/blob/1.6.0/Makefile#L690. But seems 1.7.0 has major changes in `Makefile` so I'm not sure how to work with that now.
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] beew commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
beew commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683364893
```
> sessionInfo()
R version 4.0.2 (2020-06-22)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.1 LTS
Matrix products: default
BLAS/LAPACK: /usr/lib/x86_64-linux-gnu/libmkl_rt.so
locale:
[1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_CA.UTF-8 LC_COLLATE=en_CA.UTF-8
[5] LC_MONETARY=en_CA.UTF-8 LC_MESSAGES=en_CA.UTF-8
[7] LC_PAPER=en_CA.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] devtools_2.3.1 usethis_1.6.1
loaded via a namespace (and not attached):
[1] prettyunits_1.1.1 ps_1.3.4 fansi_0.4.1 rprojroot_1.3-2
[5] withr_2.2.0 digest_0.6.25 crayon_1.3.4 assertthat_0.2.1
[9] R6_2.4.1 backports_1.1.9 magrittr_1.5 rlang_0.4.7
[13] cli_2.0.2 remotes_2.2.0 fs_1.5.0 testthat_2.3.2
[17] callr_3.4.3 ellipsis_0.3.1 desc_1.2.0 tools_4.0.2
[21] glue_1.4.2 pkgload_1.1.0 compiler_4.0.2 processx_3.4.3
[25] pkgbuild_1.1.0 sessioninfo_1.1.1 memoise_1.1.0
> list.files()
[1] "acas" "cairoR2.R"
[3] "cairotest.R" "CMHAcomplete-v27.sav"
[5] "combinelmeroutputs.R" "csdtest.R"
[7] "csdwebtest.R" "experiments"
[9] "Feast" "funclib.R"
[11] "graphdata.R" "gridtest.R"
[13] "growthcurve" "imortdata.R"
[15] "importSPSS.R" "lib"
[17] "Lin" "LMM_Examples.R"
[19] "machine_learning" "MakeVars.R"
[21] "MathemaTIC" "medical"
[23] "medical_record" "mentalabacus-master.zip"
[25] "ML" "multi"
[27] "nvblas.log" "OUTPUTS"
[29] "plumlytics" "pqR"
[31] "RAnalyticFlow" "random_notes_and_exercises.R"
[33] "rooksource.R~" "RookTutorial"
[35] "RookTutorial.R" "simulation_book.R"
[37] "speech_recognition" "tempcsv.R"
[39] "test.R" "testdata"
[41] "testout" "textmining-exercises"
[43] "time.to.event.sample.R" "to do"
[45] "Venndiagrams.R" "winbugs_tests"
[47] "x86_64-pc-linux-gnu-library" "YeeHong"
> getwd()
[1] "/home/bee/R"
```
Ok I setwd('/home/bee/R') is that an issue since some packages assumes it is $HOME
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] beew edited a comment on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
beew edited a comment on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683300248
@hetong007
Didn't work
```
make rpkg
Makefile:227: "USE_LAPACK disabled because libraries were not found"
Makefile:355: WARNING: Significant performance increases can be achieved by installing and enabling gperftools or jemalloc development packages
mkdir -p R-package/inst/libs
cp src/io/image_recordio.h R-package/src
cp -rf lib/libmxnet.so R-package/inst/libs
if [ -e "lib/libdnnl.so.1" ]; then \
cp -rf lib/libdnnl.so.1 R-package/inst/libs; \
fi
if [ -e "lib/libtvm_runtime.so" ]; then \
cp -rf lib/libtvm_runtime.so R-package/inst/libs; \
fi
mkdir -p R-package/inst/include
cp -rl include/* R-package/inst/include
Rscript -e "if(!require(devtools)){install.packages('devtools', repo = 'https://cloud.r-project.org/')}"
Loading required package: devtools
Loading required package: usethis
Rscript -e "if(!require(roxygen2)||packageVersion('roxygen2') < '6.1.1'){install.packages('roxygen2', repo = 'https://cloud.r-project.org/')}"
Loading required package: roxygen2
Rscript -e "library(devtools); library(methods); options(repos=c(CRAN='https://cloud.r-project.org/')); install_deps(pkg='R-package', dependencies = TRUE)"
Loading required package: usethis
Error: Can't find 'R-package'.
Execution halted
make: *** [Makefile:697: rpkg] Error 1
```
my makefile (in mxnet root) now looks like this
```
R CMD INSTALL R-package
Rscript -e "require(mxnet); mxnet:::mxnet.export('R-package'); warnings()"
touch R-package/NAMESPACE
Rscript -e "devtools::document('R-package');warnings()"
R CMD INSTALL R-package
```
Also the warnings look like it is trying to build mxnet from scratch, I have already built successfully with
```
make -j4 USE_OPENCV=1 USE_BLAS=openblas USE_CUDA=0 USE_CUDNN=0 USE_MKLDNN=1 USE_JEMALLOC=1
```
So why is it still saying "WARNING: Significant performance increases can be achieved by installing and enabling gperftools or jemalloc development packages"?
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] beew commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
beew commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683457715
> @beew note that [9f2e73f](https://github.com/apache/incubator-mxnet/commit/9f2e73f39b405ec24cab254076f964452382c224) contains fixes for the R package and OpenCV 4. I recommend you use MXNet 1.7 which contains this commit
Actually the makefile in V1.7 doesn't even have rpkg
```
make rpkg
Makefile:230: "USE_LAPACK disabled because libraries were not found"
Makefile:358: WARNING: Significant performance increases can be achieved by installing and enabling gperftools or jemalloc development packages
Makefile:692: warning: overriding recipe for target 'build/libcustomop_gpu_lib.so'
Makefile:680: warning: ignoring old recipe for target 'build/libcustomop_gpu_lib.so'
Makefile:695: warning: overriding recipe for target 'build/libsubgraph_lib.so'
Makefile:683: warning: ignoring old recipe for target 'build/libsubgraph_lib.so'
make: *** No rule to make target 'rpkg'. Stop.
```
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] szha commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
szha commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683384987
> > is there a way to build the R package with the libmxnet.so in pip packages?
>
> In theory you can simply replace this line: https://github.com/apache/incubator-mxnet/blob/1.6.0/Makefile#L690. But seems 1.7.0 has major changes in `Makefile` so I'm not sure how to work with that now.
You can find this section here: https://github.com/apache/incubator-mxnet/blob/7a84fe11dd7399d1c2bdd0fb679c46af69e48861/R-package/Makefile#L4
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] beew commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
beew commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683305083
It is branch 1.6.0
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] hetong007 edited a comment on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
hetong007 edited a comment on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-682419310
I did the following on my Ubuntu to install the CPU-version MXNet, could you please help to follow and verify:
First, clone MXNet by `git clone --recursive https://github.com/apache/incubator-mxnet.git -b 1.6.0`.
Then, Compile with `cmake`:
```sh
cd $MXNET_ROOT # go into your cloned repo
mkdir build && cd build
cmake -DUSE_CUDA=OFF ..
make -j16
```
I believe you have been here already. So the R part is the following.
I have to modify two files first, please see the diff info below:
```diff
diff --git a/Makefile b/Makefile
index 4746cc434..0ec177232 100644
--- a/Makefile
+++ b/Makefile
@@ -707,6 +707,7 @@ rpkg:
R CMD INSTALL R-package
Rscript -e "require(mxnet); mxnet:::mxnet.export('R-package'); warnings()"
rm R-package/NAMESPACE
+ touch R-package/NAMESPACE
Rscript -e "devtools::document('R-package');warnings()"
R CMD INSTALL R-package
diff --git a/R-package/R/zzz.R b/R-package/R/zzz.R
index a4f03ace0..1a421f1d4 100644
--- a/R-package/R/zzz.R
+++ b/R-package/R/zzz.R
@@ -34,6 +34,7 @@ NULL
.onLoad <- function(libname, pkgname) {
# Require methods for older versions of R
require(methods)
+ require(Rcpp)
tryCatch(library.dynam("libmxnet", pkgname, libname, local=FALSE), error = function(e) { print('Loading local: inst/libs/libmxnet.so'); dyn.load("R-package/inst/libs/libmxnet.so", local=FALSE) })
tryCatch(library.dynam("mxnet", pkgname, libname), error = function(e) { print('Loading local: src/mxnet.so'); dyn.load("R-package/src/mxnet.so") })
loadModule("mxnet", TRUE)
```
Finally, under your $MXNET_ROOT, run `make rpkg`.
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [incubator-mxnet] hetong007 commented on issue #18985: unable to build r packge
Posted by GitBox <gi...@apache.org>.
hetong007 commented on issue #18985:
URL: https://github.com/apache/incubator-mxnet/issues/18985#issuecomment-683385367
@szha But isn't it confusing to have the relative path like `R-package/inst/libs` in this file?
----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
For queries about this service, please contact Infrastructure at:
users@infra.apache.org