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Posted to dev@taverna.apache.org by Stian Soiland-Reyes <so...@cs.manchester.ac.uk> on 2014/11/25 12:24:11 UTC

Moving Taverna Jira issues to issues.apache.org

I talked to Gavin McDonald from apache.org INFRA at ApacheCon EU 2014.

We discussed how Taverna can move:

* git
* wiki (Confluence)
* issue tracker (Jira)


Luckily the technology is on our side - we're already using Confluence
and Jira at http://dev.mygrid.org.uk/ - however for the move a few
things needs to be sorted:

First is IP Clearance - the wiki and issues are arguably also a kind
of intellectual property.

Second is to prepare for moving of Jira issues. The documentation for this

  https://confluence.atlassian.com/display/JIRA/Restoring+a+Project+from+Backup

Basically we take a full backup to a ZIP file from the original (thus
including attachments) - and then on import INFRA will select only the
Taverna project(s).


The page above says that the Jira versions need to match exactly. So
the first step is for myGrid to upgrade
http://dev.mygrid.org.uk/issues to match  https://issues.apache.org/jira/

myGrid will also need to check if we are allowed to export the full
backup outside the EU - even though they won't all be imported this
touches on Data Protection Issues...   A workaround is to first do the
import-single project on a secondary Jira issue in-house at myGrid.


We have already said we need to prune the list of issues - but this is
not important for the import procedure and can be done afterwards.


Users in the old Jira who do not exist in the new one will be created
on import, but won't be able to log in. Therefore the common thing
INFRA does is to manually search-replace in the exported XML of the
committer usernames that do not match.  myGrid will need to prepare a
list of mygrid-to-apache Jira usernames.


The myGrid Jira is not (anymore) open for public registration, so
there won't be a bunch of "fresh" reporters that will be imported -
however not everyone at myGrid has become a Taverna committer. Gavin
suggested we can leave "Reporter" as is, but change "Assigned" after
importing with a Jira Bulk Change .


Jira projects - now we have several:

http://dev.mygrid.org.uk/issues/browse/TAVSERV
http://dev.mygrid.org.uk/issues/browse/SCUFL2
http://dev.mygrid.org.uk/issues/browse/T3

(Note that T3 has already got most of the relevant 2.x issues from
http://dev.mygrid.org.uk/issues/browse/T2 )


Gavin says we can't change the key of Jira (the project-bit of the
URIs and part of the bug number) after importing, but can change the
name of the project in the listing. It is possible to have groupings -
see for instance ActiveMQ in
https://issues.apache.org/jira/secure/BrowseProjects.jspa#all


It is possible to move issues from one project to another to change
the key, but this might not preserve the issue number, e.g. T3-123
might become TAV-82.

In the XML it is possible to search-replace the project key.



I assume we don't want to import them with the current names, as it
will be odd to have 'TAVSERV', 'T3' and 'SCUFL2' in Apache - we should
at least have a common prefix.

Perhaps TAVSERV and TAV?

Or should there be one project per git repositories? I am not so keen
on this as often an issue will touch upon multiple parts - this is
true even for the Server that might need a related fix in the command
line.

Or one project per product?  (e.g. TAVENGINE, TAVCMD, TAVWBENCH,
TAVSERVER)? This might make more sense. ((Note that _ and - are not
valid in the key name.. one project used a lower-case "x", like
"TAVxENGINE" ! ))

Or we can just have a single, merged TAV project, and just use
Components and Versions as earlier mentipned? This means we can't as
easily to HTTP redirects from the old wiki (perhaps only from T3).


I think I will need your views on these choices..  Could you do your
+1/0/-1 above?


-- 
Stian Soiland-Reyes, myGrid team
School of Computer Science
The University of Manchester
http://soiland-reyes.com/stian/work/ http://orcid.org/0000-0001-9842-9718

Re: Moving Taverna Jira issues to issues.apache.org

Posted by Stian Soiland-Reyes <so...@cs.manchester.ac.uk>.
OK, I think you both have valid points - so let's proceed with this pruning
in our old Jira first then.

We can assume that fixed issues that are not marked for 3.x will move to T2.



http://dev.mygrid.org.uk/issues/browse/T3 shows:

Version Issues
Unreleased 3 contract 2013-03    34
Unreleased 2.5.1       15
Unreleased 2.5.n        430
Unreleased 3.0.0 beta 1       70
Unreleased 3 Wishlist       34
Unscheduled    91


So I guess the main issues to keep are the 3.x ones - the Unscheduled ones
we obviously have to go through.

2.5.n contains the biggest chunk here - some of those are 2.x specific -
but given that we are not going to do another 2.x beyond 2.5.1 (which is
already assigned above) - then I would split these into "Won't fix" (2.x
specific, e.g. Raven issue or myExperiment plugin) and change the remaining
into fix for 3.x something.

We can fix what we call those 3.x somethings as well.




It is true that many of these can be solved differently in 3.x - e.g. XPath
example document can be stored as an annotation in the Taverna 3 workflow
bundle as opposed to bundled inside the XML in Taverna 2. It is still an
issue, though..



Menthors - any suggestions on how we should proceed with this "going
through" the Apache Way without having 430 email threads? Traditionally we
have done this by getting together in a meeting room for 4 hours, Jira on
the projector, and argue/edit/delete/reassign etc. until our brains are
cooked.




FYI - here's the full list of 2.5.n issues:

http://dev.mygrid.org.uk/issues/sr/jira.issueviews:searchrequest-printable/temp/SearchRequest.html?jqlQuery=project+%3D+T3+AND+resolution+%3D+Unresolved+AND+fixVersion+%3D+%222.5.n%22+ORDER+BY+key+ASC%2C+priority+DESC&tempMax=1000

Key  Summary  P    T3-73 <http://dev.mygrid.org.uk/issues/browse/T3-73>

Beanshell dependency cannot be removed if the dependency file is missing
<http://dev.mygrid.org.uk/issues/browse/T3-73>
 [image: Minor]   T3-74 <http://dev.mygrid.org.uk/issues/browse/T3-74>

Beanshell and R configuration - better editor
<http://dev.mygrid.org.uk/issues/browse/T3-74>
 [image: Major]   T3-75 <http://dev.mygrid.org.uk/issues/browse/T3-75>

Beanshell cut and paste should be exposed in the user interface
<http://dev.mygrid.org.uk/issues/browse/T3-75>
 [image: Major]   T3-81 <http://dev.mygrid.org.uk/issues/browse/T3-81>

Additional Edits for undo/redo functionality
<http://dev.mygrid.org.uk/issues/browse/T3-81>
 [image: Minor]   T3-84 <http://dev.mygrid.org.uk/issues/browse/T3-84>

Beanshell test facility <http://dev.mygrid.org.uk/issues/browse/T3-84>
 [image: Minor]   T3-85 <http://dev.mygrid.org.uk/issues/browse/T3-85>

Port types for beanshell <http://dev.mygrid.org.uk/issues/browse/T3-85>
 [image: Major]   T3-86 <http://dev.mygrid.org.uk/issues/browse/T3-86>

The text in beanshell script check error dialogs should be selectable
<http://dev.mygrid.org.uk/issues/browse/T3-86>
 [image: Trivial]   T3-87 <http://dev.mygrid.org.uk/issues/browse/T3-87>

Beanshell could stream results
<http://dev.mygrid.org.uk/issues/browse/T3-87>
 [image: Minor]   T3-91 <http://dev.mygrid.org.uk/issues/browse/T3-91>

Deselecting a BioMart query takes a long time
<http://dev.mygrid.org.uk/issues/browse/T3-91>
 [image: Major]   T3-92 <http://dev.mygrid.org.uk/issues/browse/T3-92>

Edit Property does not ask for confirmation on Window Close
<http://dev.mygrid.org.uk/issues/browse/T3-92>
 [image: Minor]   T3-93 <http://dev.mygrid.org.uk/issues/browse/T3-93>

References to remote data are refetched
<http://dev.mygrid.org.uk/issues/browse/T3-93>
 [image: Major]   T3-94 <http://dev.mygrid.org.uk/issues/browse/T3-94>

Tool service does not cope with machine failure
<http://dev.mygrid.org.uk/issues/browse/T3-94>
 [image: Major]   T3-100 <http://dev.mygrid.org.uk/issues/browse/T3-100>

Have summary below script <http://dev.mygrid.org.uk/issues/browse/T3-100>
 [image: Major]   T3-101 <http://dev.mygrid.org.uk/issues/browse/T3-101>

Allow selection of part of the command and use as port
<http://dev.mygrid.org.uk/issues/browse/T3-101>
 [image: Major]   T3-102 <http://dev.mygrid.org.uk/issues/browse/T3-102>

Download in invocation <http://dev.mygrid.org.uk/issues/browse/T3-102>
 [image: Major]   T3-104 <http://dev.mygrid.org.uk/issues/browse/T3-104>

Ssh invocation should be more robust
<http://dev.mygrid.org.uk/issues/browse/T3-104>
 [image: Major]   T3-105 <http://dev.mygrid.org.uk/issues/browse/T3-105>

Use the test facility <http://dev.mygrid.org.uk/issues/browse/T3-105>
 [image: Major]   T3-107 <http://dev.mygrid.org.uk/issues/browse/T3-107>

Allow submission onto a grid <http://dev.mygrid.org.uk/issues/browse/T3-107>
 [image: Major]   T3-109 <http://dev.mygrid.org.uk/issues/browse/T3-109>

Monitor sftp <http://dev.mygrid.org.uk/issues/browse/T3-109>
 [image: Major]   T3-111 <http://dev.mygrid.org.uk/issues/browse/T3-111>

Allow JSch to use authentication other than username and password
<http://dev.mygrid.org.uk/issues/browse/T3-111>
 [image: Major]   T3-112 <http://dev.mygrid.org.uk/issues/browse/T3-112>

Concatenate files beanshell assumes newline separator
<http://dev.mygrid.org.uk/issues/browse/T3-112>
 [image: Minor]   T3-114 <http://dev.mygrid.org.uk/issues/browse/T3-114>

List Files By Extension localworker beanshell has bugs
<http://dev.mygrid.org.uk/issues/browse/T3-114>
 [image: Minor]   T3-115 <http://dev.mygrid.org.uk/issues/browse/T3-115>

"Echo list" and other list local workers don't support references (from API
consumer) <http://dev.mygrid.org.uk/issues/browse/T3-115>
 [image: Minor]   T3-118 <http://dev.mygrid.org.uk/issues/browse/T3-118>

Merge string list to string - spelling mistake
<http://dev.mygrid.org.uk/issues/browse/T3-118>
 [image: Minor]   T3-119 <http://dev.mygrid.org.uk/issues/browse/T3-119>

T3-115 <http://dev.mygrid.org.uk/issues/browse/T3-115> Modify Beanshell
definition to specify reference-resolving (including lists of refs etc)
<http://dev.mygrid.org.uk/issues/browse/T3-119>
 [image: Minor]   T3-120 <http://dev.mygrid.org.uk/issues/browse/T3-120>

T3-115 <http://dev.mygrid.org.uk/issues/browse/T3-115> Modify Beanshell UI
to specify reference resolving
<http://dev.mygrid.org.uk/issues/browse/T3-120>
 [image: Minor]   T3-121 <http://dev.mygrid.org.uk/issues/browse/T3-121>

T3-115 <http://dev.mygrid.org.uk/issues/browse/T3-115> Modify list local
workers to use ref resolving <http://dev.mygrid.org.uk/issues/browse/T3-121>
 [image: Minor]   T3-122 <http://dev.mygrid.org.uk/issues/browse/T3-122>

T3-115 <http://dev.mygrid.org.uk/issues/browse/T3-115> Test beanshell with
reference resolving <http://dev.mygrid.org.uk/issues/browse/T3-122>
 [image: Minor]   T3-125 <http://dev.mygrid.org.uk/issues/browse/T3-125>

Local workers that can handle error documents
<http://dev.mygrid.org.uk/issues/browse/T3-125>
 [image: Major]   T3-126 <http://dev.mygrid.org.uk/issues/browse/T3-126>

List creation shim <http://dev.mygrid.org.uk/issues/browse/T3-126>
 [image: Minor]   T3-127 <http://dev.mygrid.org.uk/issues/browse/T3-127>

Move out Local worker integration tests
<http://dev.mygrid.org.uk/issues/browse/T3-127>
 [image: Minor]   T3-128 <http://dev.mygrid.org.uk/issues/browse/T3-128>

Reorganize and create coherent set of local services
<http://dev.mygrid.org.uk/issues/browse/T3-128>
 [image: Major]   T3-129 <http://dev.mygrid.org.uk/issues/browse/T3-129>

AppendToFile would be useful <http://dev.mygrid.org.uk/issues/browse/T3-129>
 [image: Major]   T3-130 <http://dev.mygrid.org.uk/issues/browse/T3-130>

Send an Email does not work with authenticated SMTP servers
<http://dev.mygrid.org.uk/issues/browse/T3-130>
 [image: Major]   T3-131 <http://dev.mygrid.org.uk/issues/browse/T3-131>

ODBC options for SQL local services
<http://dev.mygrid.org.uk/issues/browse/T3-131>
 [image: Major]   T3-132 <http://dev.mygrid.org.uk/issues/browse/T3-132>

Add local workers for URL encoding of strings
<http://dev.mygrid.org.uk/issues/browse/T3-132>
 [image: Major]   T3-135 <http://dev.mygrid.org.uk/issues/browse/T3-135>

Need to be able to share SQL services' database connection details and to
hide it when sharing the workflow
<http://dev.mygrid.org.uk/issues/browse/T3-135>
 [image: Critical]   T3-140 <http://dev.mygrid.org.uk/issues/browse/T3-140>

REST Activity - decide whether "Send HTTP Expect header" checkbox should
also affect PUT requests, not just POST
<http://dev.mygrid.org.uk/issues/browse/T3-140>
 [image: Minor]   T3-141 <http://dev.mygrid.org.uk/issues/browse/T3-141>

Investigate templating tools & libraries
<http://dev.mygrid.org.uk/issues/browse/T3-141>
 [image: Minor]   T3-143 <http://dev.mygrid.org.uk/issues/browse/T3-143>

REST activity should support multipart/form-data encoding
<http://dev.mygrid.org.uk/issues/browse/T3-143>
 [image: Major]   T3-144 <http://dev.mygrid.org.uk/issues/browse/T3-144>

Support Amazon S3 authentication
<http://dev.mygrid.org.uk/issues/browse/T3-144>
 [image: Major]   T3-147 <http://dev.mygrid.org.uk/issues/browse/T3-147>

Rshell cannot upload large files
<http://dev.mygrid.org.uk/issues/browse/T3-147>
 [image: Major]   T3-148 <http://dev.mygrid.org.uk/issues/browse/T3-148>

Keep session alive does not work as expected
<http://dev.mygrid.org.uk/issues/browse/T3-148>
 [image: Major]   T3-150 <http://dev.mygrid.org.uk/issues/browse/T3-150>

R should allow return of lists of PNGs
<http://dev.mygrid.org.uk/issues/browse/T3-150>
 [image: Critical]   T3-152 <http://dev.mygrid.org.uk/issues/browse/T3-152>

Improve type support for R <http://dev.mygrid.org.uk/issues/browse/T3-152>
 [image: Major]   T3-157 <http://dev.mygrid.org.uk/issues/browse/T3-157>

List constant/constructor activity
<http://dev.mygrid.org.uk/issues/browse/T3-157>
 [image: Minor]   T3-158 <http://dev.mygrid.org.uk/issues/browse/T3-158>

Constant value should take note of the port type and allow more
possibilities <http://dev.mygrid.org.uk/issues/browse/T3-158>
 [image: Major]   T3-160 <http://dev.mygrid.org.uk/issues/browse/T3-160>

WSDL activity cannot cope with recursive type definitions
<http://dev.mygrid.org.uk/issues/browse/T3-160>
 [image: Blocker]   T3-161 <http://dev.mygrid.org.uk/issues/browse/T3-161>

Adding XML splitters is only available on the activity
<http://dev.mygrid.org.uk/issues/browse/T3-161>
 [image: Minor]   T3-163 <http://dev.mygrid.org.uk/issues/browse/T3-163>

Can't import cyclic WSDL schema includes
<http://dev.mygrid.org.uk/issues/browse/T3-163>
 [image: Minor]   T3-165 <http://dev.mygrid.org.uk/issues/browse/T3-165>

Wrong/invalid element name from XML splitters for inner complex types
<http://dev.mygrid.org.uk/issues/browse/T3-165>
 [image: Major]   T3-167 <http://dev.mygrid.org.uk/issues/browse/T3-167>

Output splitter can have problems with xsd:any
<http://dev.mygrid.org.uk/issues/browse/T3-167>
 [image: Major]   T3-168 <http://dev.mygrid.org.uk/issues/browse/T3-168>

XML splitters incorrectly handling arrays in results
<http://dev.mygrid.org.uk/issues/browse/T3-168>
 [image: Major]   T3-169 <http://dev.mygrid.org.uk/issues/browse/T3-169>

Misinterpretation of output port depth for WSDL service
<http://dev.mygrid.org.uk/issues/browse/T3-169>
 [image: Minor]   T3-170 <http://dev.mygrid.org.uk/issues/browse/T3-170>

Axis Fault in WSDLActivity <http://dev.mygrid.org.uk/issues/browse/T3-170>
 [image: Major]   T3-171 <http://dev.mygrid.org.uk/issues/browse/T3-171>

WSDL activity can't distinguish between operations with same name on
different port types <http://dev.mygrid.org.uk/issues/browse/T3-171>
 [image: Minor]   T3-172 <http://dev.mygrid.org.uk/issues/browse/T3-172>

Soap 1.2 seems not to be accepted
<http://dev.mygrid.org.uk/issues/browse/T3-172>
 [image: Major]   T3-174 <http://dev.mygrid.org.uk/issues/browse/T3-174>

XML splitter problem <http://dev.mygrid.org.uk/issues/browse/T3-174>
 [image: Minor]   T3-175 <http://dev.mygrid.org.uk/issues/browse/T3-175>

WSDLActivity and WSDL Input XML splitter don't support binary data
<http://dev.mygrid.org.uk/issues/browse/T3-175>
 [image: Major]   T3-176 <http://dev.mygrid.org.uk/issues/browse/T3-176>

Reparses WSDL when opening scufl model
<http://dev.mygrid.org.uk/issues/browse/T3-176>
 [image: Minor]   T3-177 <http://dev.mygrid.org.uk/issues/browse/T3-177>

XML splitters not updated when XML schema changes on server
<http://dev.mygrid.org.uk/issues/browse/T3-177>
 [image: Minor]   T3-178 <http://dev.mygrid.org.uk/issues/browse/T3-178>

XML splitters return wrong elements on maxOccurs=0
<http://dev.mygrid.org.uk/issues/browse/T3-178>
 [image: Minor]   T3-179 <http://dev.mygrid.org.uk/issues/browse/T3-179>

WSDL with ArraysOfIntegers gives NullPointerException in
org.apache.axis.wsdl.symbolTable.Utils.getNodeNameQName(Node)
<http://dev.mygrid.org.uk/issues/browse/T3-179>
 [image: Major]   T3-180 <http://dev.mygrid.org.uk/issues/browse/T3-180>

Stack overflow when adding some WSDL services to the workflow
<http://dev.mygrid.org.uk/issues/browse/T3-180>
 [image: Major]   T3-181 <http://dev.mygrid.org.uk/issues/browse/T3-181>

XML splitter not offering input splitter
<http://dev.mygrid.org.uk/issues/browse/T3-181>
 [image: Major]   T3-183 <http://dev.mygrid.org.uk/issues/browse/T3-183>

XML inputs not valid per WSDL spec for xsd:simpleType
<http://dev.mygrid.org.uk/issues/browse/T3-183>
 [image: Minor]   T3-184 <http://dev.mygrid.org.uk/issues/browse/T3-184>

WSRF support: WS-Addressing ''To'' request header is missing
<http://dev.mygrid.org.uk/issues/browse/T3-184>
 [image: Minor]   T3-185 <http://dev.mygrid.org.uk/issues/browse/T3-185>

WSDL activity can throw NullPointerException
<http://dev.mygrid.org.uk/issues/browse/T3-185>
 [image: Major]   T3-186 <http://dev.mygrid.org.uk/issues/browse/T3-186>

Error extracting results from a doc/literal service with unwrapped arrays
<http://dev.mygrid.org.uk/issues/browse/T3-186>
 [image: Major]   T3-189 <http://dev.mygrid.org.uk/issues/browse/T3-189>

Support a catalogue of known schemas
<http://dev.mygrid.org.uk/issues/browse/T3-189>
 [image: Critical]   T3-190 <http://dev.mygrid.org.uk/issues/browse/T3-190>

XML splitter port values should take account of xsd
<http://dev.mygrid.org.uk/issues/browse/T3-190>
 [image: Major]   T3-191 <http://dev.mygrid.org.uk/issues/browse/T3-191>

Global edit - ability to change configurations of all e.g. WSDL services in
the workflow to point to a different endpoint
<http://dev.mygrid.org.uk/issues/browse/T3-191>
 [image: Major]   T3-192 <http://dev.mygrid.org.uk/issues/browse/T3-192>

WSDL integration tests should run with embedded jetty
<http://dev.mygrid.org.uk/issues/browse/T3-192>
 [image: Minor]   T3-193 <http://dev.mygrid.org.uk/issues/browse/T3-193>

WSDL 1.1 and 2 should be supported
<http://dev.mygrid.org.uk/issues/browse/T3-193>
 [image: Major]   T3-194 <http://dev.mygrid.org.uk/issues/browse/T3-194>

Improvements to xml splitter <http://dev.mygrid.org.uk/issues/browse/T3-194>
 [image: Major]   T3-195 <http://dev.mygrid.org.uk/issues/browse/T3-195>

Add HTTP Digest Auth for Web services
<http://dev.mygrid.org.uk/issues/browse/T3-195>
 [image: Major]   T3-196 <http://dev.mygrid.org.uk/issues/browse/T3-196>

WSDL activity configuration dialog could be made to look similar to the
other config dialogs <http://dev.mygrid.org.uk/issues/browse/T3-196>
 [image: Major]   T3-197 <http://dev.mygrid.org.uk/issues/browse/T3-197>

SAWSDL support <http://dev.mygrid.org.uk/issues/browse/T3-197>
 [image: Major]   T3-198 <http://dev.mygrid.org.uk/issues/browse/T3-198>

Make showing of attachments port optional
<http://dev.mygrid.org.uk/issues/browse/T3-198>
 [image: Major]   T3-199 <http://dev.mygrid.org.uk/issues/browse/T3-199>

Make requirement for XML splitter more obvious
<http://dev.mygrid.org.uk/issues/browse/T3-199>
 [image: Major]   T3-200 <http://dev.mygrid.org.uk/issues/browse/T3-200>

Automatic addition of XML splitters
<http://dev.mygrid.org.uk/issues/browse/T3-200>
 [image: Major]   T3-201 <http://dev.mygrid.org.uk/issues/browse/T3-201>

WSDL security configuration don't indicate if username/password already set
<http://dev.mygrid.org.uk/issues/browse/T3-201>
 [image: Minor]   T3-202 <http://dev.mygrid.org.uk/issues/browse/T3-202>

More clearly identify a WSDL complex type input
<http://dev.mygrid.org.uk/issues/browse/T3-202>
 [image: Minor]   T3-203 <http://dev.mygrid.org.uk/issues/browse/T3-203>

WSDL security box should guess profile based on existing uses of a given
WSDL <http://dev.mygrid.org.uk/issues/browse/T3-203>
 [image: Minor]   T3-204 <http://dev.mygrid.org.uk/issues/browse/T3-204>

Invalid Xpath expression breaks XPath Service GUI
<http://dev.mygrid.org.uk/issues/browse/T3-204>
 [image: Major]   T3-205 <http://dev.mygrid.org.uk/issues/browse/T3-205>

XPath Activity - add / improve Javadoc throughout the code
<http://dev.mygrid.org.uk/issues/browse/T3-205>
 [image: Minor]   T3-206 <http://dev.mygrid.org.uk/issues/browse/T3-206>

XPath service is very slow <http://dev.mygrid.org.uk/issues/browse/T3-206>
 [image: Major]   T3-207 <http://dev.mygrid.org.uk/issues/browse/T3-207>

XPath activity stores the example document which can be quite large
<http://dev.mygrid.org.uk/issues/browse/T3-207>
 [image: Major]   T3-209 <http://dev.mygrid.org.uk/issues/browse/T3-209>

Preview Browser - Service Previews: "Error: location entry exists, but
holds no data..." <http://dev.mygrid.org.uk/issues/browse/T3-209>
 [image: Minor]   T3-210 <http://dev.mygrid.org.uk/issues/browse/T3-210>

Preview Browser - Text is not selectable
<http://dev.mygrid.org.uk/issues/browse/T3-210>
 [image: Major]   T3-211 <http://dev.mygrid.org.uk/issues/browse/T3-211>

BioCatalogue plugin GUI shows searching icon when not connected to internet
<http://dev.mygrid.org.uk/issues/browse/T3-211>
 [image: Minor]   T3-214 <http://dev.mygrid.org.uk/issues/browse/T3-214>

Write Features - comments <http://dev.mygrid.org.uk/issues/browse/T3-214>
 [image: Major]   T3-218 <http://dev.mygrid.org.uk/issues/browse/T3-218>

Search Results - ordering of search/filtering results
<http://dev.mygrid.org.uk/issues/browse/T3-218>
 [image: Major]   T3-225 <http://dev.mygrid.org.uk/issues/browse/T3-225>

Investigate the effects of Linked Data compliance in BioCatalogue
<http://dev.mygrid.org.uk/issues/browse/T3-225>
 [image: Major]   T3-227 <http://dev.mygrid.org.uk/issues/browse/T3-227>

BioCatalogue preferences - When BioCatalogue base URL is updated, need to
update favourite searches, filters, etc to use the new base URL
<http://dev.mygrid.org.uk/issues/browse/T3-227>
 [image: Minor]   T3-230 <http://dev.mygrid.org.uk/issues/browse/T3-230>

Health Checker - get maximum useful age of validation reports from
Taverna's settings <http://dev.mygrid.org.uk/issues/browse/T3-230>
 [image: Major]   T3-231 <http://dev.mygrid.org.uk/issues/browse/T3-231>

Health Checker - add caching <http://dev.mygrid.org.uk/issues/browse/T3-231>
 [image: Major]   T3-232 <http://dev.mygrid.org.uk/issues/browse/T3-232>

Move BioCatalogue test to src/test
<http://dev.mygrid.org.uk/issues/browse/T3-232>
 [image: Major]   T3-233 <http://dev.mygrid.org.uk/issues/browse/T3-233>

Health Checker - processor "health check" dialog: need to have a small icon
next to each type of test and a larger overall status icon
<http://dev.mygrid.org.uk/issues/browse/T3-233>
 [image: Minor]   T3-235 <http://dev.mygrid.org.uk/issues/browse/T3-235>

Ability to ask the BioCatalogue for replacement services
<http://dev.mygrid.org.uk/issues/browse/T3-235>
 [image: Major]   T3-236 <http://dev.mygrid.org.uk/issues/browse/T3-236>

Preview Browser - Service Previews: monitoring status icon should be
clickable and bring up the monitoring status of the service
<http://dev.mygrid.org.uk/issues/browse/T3-236>
 [image: Minor]   T3-238 <http://dev.mygrid.org.uk/issues/browse/T3-238>

Unable to determine file for log4j.properties in plugin tutorial
<http://dev.mygrid.org.uk/issues/browse/T3-238>
 [image: Major]   T3-242 <http://dev.mygrid.org.uk/issues/browse/T3-242>

Create pack of broken workflows
<http://dev.mygrid.org.uk/issues/browse/T3-242>
 [image: Major]   T3-245 <http://dev.mygrid.org.uk/issues/browse/T3-245>

User forum <http://dev.mygrid.org.uk/issues/browse/T3-245>
 [image: Major]   T3-246 <http://dev.mygrid.org.uk/issues/browse/T3-246>

Need primer on webservices <http://dev.mygrid.org.uk/issues/browse/T3-246>
 [image: Major]   T3-247 <http://dev.mygrid.org.uk/issues/browse/T3-247>

Document issue with referencing w3c schemas
<http://dev.mygrid.org.uk/issues/browse/T3-247>
 [image: Major]   T3-250 <http://dev.mygrid.org.uk/issues/browse/T3-250>

Documentation on plugin points
<http://dev.mygrid.org.uk/issues/browse/T3-250>
 [image: Critical]   T3-253 <http://dev.mygrid.org.uk/issues/browse/T3-253>

Workflow patterns in myExperiment
<http://dev.mygrid.org.uk/issues/browse/T3-253>
 [image: Minor]   T3-254 <http://dev.mygrid.org.uk/issues/browse/T3-254>

Webservice generation documentation
<http://dev.mygrid.org.uk/issues/browse/T3-254>
 [image: Minor]   T3-255 <http://dev.mygrid.org.uk/issues/browse/T3-255>

ModelMap setModel does not send out events if same entry
<http://dev.mygrid.org.uk/issues/browse/T3-255>
 [image: Major]   T3-256 <http://dev.mygrid.org.uk/issues/browse/T3-256>

"waiting for iteration" caused by empty depth 2 lists
<http://dev.mygrid.org.uk/issues/browse/T3-256>
 [image: Major]   T3-257 <http://dev.mygrid.org.uk/issues/browse/T3-257>

Error information from DispatchErrorEvent not persisted
<http://dev.mygrid.org.uk/issues/browse/T3-257>
 [image: Major]   T3-258 <http://dev.mygrid.org.uk/issues/browse/T3-258>

Default usage of memory is high on Windows
<http://dev.mygrid.org.uk/issues/browse/T3-258>
 [image: Major]   T3-259 <http://dev.mygrid.org.uk/issues/browse/T3-259>

Duplicate ExtensionFileFilter class in T2 codebase (in utils/lang and
t2core-renderers-impl). <http://dev.mygrid.org.uk/issues/browse/T3-259>
 [image: Minor]   T3-260 <http://dev.mygrid.org.uk/issues/browse/T3-260>

Error handling dispatch layer with replacement values
<http://dev.mygrid.org.uk/issues/browse/T3-260>
 [image: Major]   T3-261 <http://dev.mygrid.org.uk/issues/browse/T3-261>

Ability to generate data analysis section of a paper
<http://dev.mygrid.org.uk/issues/browse/T3-261>
 [image: Major]   T3-262 <http://dev.mygrid.org.uk/issues/browse/T3-262>

Intelligent rerun, run from a point in the workflow
<http://dev.mygrid.org.uk/issues/browse/T3-262>
 [image: Major]   T3-264 <http://dev.mygrid.org.uk/issues/browse/T3-264>

If/else-like branching capability
<http://dev.mygrid.org.uk/issues/browse/T3-264>
 [image: Major]   T3-265 <http://dev.mygrid.org.uk/issues/browse/T3-265>

Capture and display workflow-specific log4j lines
<http://dev.mygrid.org.uk/issues/browse/T3-265>
 [image: Minor]   T3-267 <http://dev.mygrid.org.uk/issues/browse/T3-267>

Passing of information to activities
<http://dev.mygrid.org.uk/issues/browse/T3-267>
 [image: Major]   T3-268 <http://dev.mygrid.org.uk/issues/browse/T3-268>

Information passed to workflow run
<http://dev.mygrid.org.uk/issues/browse/T3-268>
 [image: Major]   T3-269 <http://dev.mygrid.org.uk/issues/browse/T3-269>

Need to be able to configure a service's timeout
<http://dev.mygrid.org.uk/issues/browse/T3-269>
 [image: Major]   T3-270 <http://dev.mygrid.org.uk/issues/browse/T3-270>

Identify useful operators for Taverna
<http://dev.mygrid.org.uk/issues/browse/T3-270>
 [image: Major]   T3-272 <http://dev.mygrid.org.uk/issues/browse/T3-272>

Throttle calling of services <http://dev.mygrid.org.uk/issues/browse/T3-272>
 [image: Major]   T3-274 <http://dev.mygrid.org.uk/issues/browse/T3-274>

Can't add alternates <http://dev.mygrid.org.uk/issues/browse/T3-274>
 [image: Critical]   T3-277 <http://dev.mygrid.org.uk/issues/browse/T3-277>

Provenance tables limit length of service and/or port names
<http://dev.mygrid.org.uk/issues/browse/T3-277>
 [image: Major]   T3-278 <http://dev.mygrid.org.uk/issues/browse/T3-278>

Provenance URIs for iterations not unique with multiple use of nested
workflow <http://dev.mygrid.org.uk/issues/browse/T3-278>
 [image: Major]   T3-283 <http://dev.mygrid.org.uk/issues/browse/T3-283>

EventProcessor gets 'successor ports' ignoring workflow ID
<http://dev.mygrid.org.uk/issues/browse/T3-283>
 [image: Critical]   T3-287 <http://dev.mygrid.org.uk/issues/browse/T3-287>

Provenance recording fails if workflow name is very long
<http://dev.mygrid.org.uk/issues/browse/T3-287>
 [image: Major]   T3-289 <http://dev.mygrid.org.uk/issues/browse/T3-289>

t2-database already closed problem
<http://dev.mygrid.org.uk/issues/browse/T3-289>
 [image: Major]   T3-292 <http://dev.mygrid.org.uk/issues/browse/T3-292>

Taverna does not load the final results when loading previous results for
the EBI interproscan wf <http://dev.mygrid.org.uk/issues/browse/T3-292>
 [image: Major]   T3-295 <http://dev.mygrid.org.uk/issues/browse/T3-295>

ProvenanceQuery.getContainedProcessors, getWfNameForDataflow, isDataflow
should not be used <http://dev.mygrid.org.uk/issues/browse/T3-295>
 [image: Critical]   T3-300 <http://dev.mygrid.org.uk/issues/browse/T3-300>

Cancelled runs are shown as finished when Taverna is restarted
<http://dev.mygrid.org.uk/issues/browse/T3-300>
 [image: Major]   T3-304 <http://dev.mygrid.org.uk/issues/browse/T3-304>

SQLIntegrityConstraintViolationException on WORKFLOWRUN with duplicate
nested workflow <http://dev.mygrid.org.uk/issues/browse/T3-304>
 [image: Minor]   T3-306 <http://dev.mygrid.org.uk/issues/browse/T3-306>

allow users to configure which database provenance information is placed
into (specifically allow MySQL insted of Derby)
<http://dev.mygrid.org.uk/issues/browse/T3-306>
 [image: Minor]   T3-307 <http://dev.mygrid.org.uk/issues/browse/T3-307>

Provevance should record and show loops
<http://dev.mygrid.org.uk/issues/browse/T3-307>
 [image: Major]   T3-308 <http://dev.mygrid.org.uk/issues/browse/T3-308>

Selecting the level of provenance logging
<http://dev.mygrid.org.uk/issues/browse/T3-308>
 [image: Major]   T3-309 <http://dev.mygrid.org.uk/issues/browse/T3-309>

Limit amount of provenance captured
<http://dev.mygrid.org.uk/issues/browse/T3-309>
 [image: Major]   T3-310 <http://dev.mygrid.org.uk/issues/browse/T3-310>

Move provenance and connection preferences from global confuration to run
dialogue <http://dev.mygrid.org.uk/issues/browse/T3-310>
 [image: Major]   T3-311 <http://dev.mygrid.org.uk/issues/browse/T3-311>

Provenance should record and show retries
<http://dev.mygrid.org.uk/issues/browse/T3-311>
 [image: Major]   T3-312 <http://dev.mygrid.org.uk/issues/browse/T3-312>

Show which values caused another value
<http://dev.mygrid.org.uk/issues/browse/T3-312>
 [image: Major]   T3-313 <http://dev.mygrid.org.uk/issues/browse/T3-313>

Speed slowdown of provenance should be made obvious to users
<http://dev.mygrid.org.uk/issues/browse/T3-313>
 [image: Major]   T3-314 <http://dev.mygrid.org.uk/issues/browse/T3-314>

Provenance should be off by default
<http://dev.mygrid.org.uk/issues/browse/T3-314>
 [image: Major]   T3-315 <http://dev.mygrid.org.uk/issues/browse/T3-315>

Database cannot handle data bigger than ~100MB.
<http://dev.mygrid.org.uk/issues/browse/T3-315>
 [image: Major]   T3-319 <http://dev.mygrid.org.uk/issues/browse/T3-319>

StreamToStringConverter falls over if data is too large
<http://dev.mygrid.org.uk/issues/browse/T3-319>
 [image: Major]   T3-320 <http://dev.mygrid.org.uk/issues/browse/T3-320>

Augmentor does not cope with large data
<http://dev.mygrid.org.uk/issues/browse/T3-320>
 [image: Major]   T3-322 <http://dev.mygrid.org.uk/issues/browse/T3-322>

InlineStringReference and InlineByteArrayReference do not cope with large
data <http://dev.mygrid.org.uk/issues/browse/T3-322>
 [image: Major]   T3-323 <http://dev.mygrid.org.uk/issues/browse/T3-323>

Failed to start database 't2-database': Container Container(0, 11104)
cannot be opened; it either has been dropped or does not exist
<http://dev.mygrid.org.uk/issues/browse/T3-323>
 [image: Major]   T3-324 <http://dev.mygrid.org.uk/issues/browse/T3-324>

When the cache is full, the data processing slows down enormously
<http://dev.mygrid.org.uk/issues/browse/T3-324>
 [image: Major]   T3-325 <http://dev.mygrid.org.uk/issues/browse/T3-325>

References to remote data are not "frozen"
<http://dev.mygrid.org.uk/issues/browse/T3-325>
 [image: Major]   T3-326 <http://dev.mygrid.org.uk/issues/browse/T3-326>

Allow passing of File objects
<http://dev.mygrid.org.uk/issues/browse/T3-326>
 [image: Major]   T3-327 <http://dev.mygrid.org.uk/issues/browse/T3-327>

Check speed of snapshotting <http://dev.mygrid.org.uk/issues/browse/T3-327>
 [image: Major]   T3-328 <http://dev.mygrid.org.uk/issues/browse/T3-328>

Augment ReferenceSet with ExternalReferenceSPI
<http://dev.mygrid.org.uk/issues/browse/T3-328>
 [image: Major]   T3-329 <http://dev.mygrid.org.uk/issues/browse/T3-329>

Binary data should not be stored using base64
<http://dev.mygrid.org.uk/issues/browse/T3-329>
 [image: Critical]   T3-330 <http://dev.mygrid.org.uk/issues/browse/T3-330>

Health checker appears not to cache results
<http://dev.mygrid.org.uk/issues/browse/T3-330>
 [image: Major]   T3-333 <http://dev.mygrid.org.uk/issues/browse/T3-333>

Credential Manager imports 'old' credential stores from newer installations
<http://dev.mygrid.org.uk/issues/browse/T3-333>
 [image: Minor]   T3-334 <http://dev.mygrid.org.uk/issues/browse/T3-334>

If a WSDL activity is secure then a little padlock should indicate that on
the activity's box in the wf diagram
<http://dev.mygrid.org.uk/issues/browse/T3-334>
 [image: Major]   T3-336 <http://dev.mygrid.org.uk/issues/browse/T3-336>

OAuth support <http://dev.mygrid.org.uk/issues/browse/T3-336>
 [image: Major]   T3-338 <http://dev.mygrid.org.uk/issues/browse/T3-338>

Graphical utility classes are in workflowmodel
<http://dev.mygrid.org.uk/issues/browse/T3-338>
 [image: Major]   T3-339 <http://dev.mygrid.org.uk/issues/browse/T3-339>

Type checking on ports <http://dev.mygrid.org.uk/issues/browse/T3-339>
 [image: Major]   T3-340 <http://dev.mygrid.org.uk/issues/browse/T3-340>

Add methods to get/set standard annotations
<http://dev.mygrid.org.uk/issues/browse/T3-340>
 [image: Major]   T3-341 <http://dev.mygrid.org.uk/issues/browse/T3-341>

Alter a workflow after partial run
<http://dev.mygrid.org.uk/issues/browse/T3-341>
 [image: Major]   T3-342 <http://dev.mygrid.org.uk/issues/browse/T3-342>

Memory usage monitor <http://dev.mygrid.org.uk/issues/browse/T3-342>
 [image: Major]   T3-343 <http://dev.mygrid.org.uk/issues/browse/T3-343>

Paused wfs can actually finish after pausing causing the UI to get in a
weird state and an exception to be thrown
<http://dev.mygrid.org.uk/issues/browse/T3-343>
 [image: Minor]   T3-344 <http://dev.mygrid.org.uk/issues/browse/T3-344>

Plugin manager does not support non-http plugin sites
<http://dev.mygrid.org.uk/issues/browse/T3-344>
 [image: Major]   T3-346 <http://dev.mygrid.org.uk/issues/browse/T3-346>

Too many open files error, when using T2 on a fresh Ubuntu 10.04
installation <http://dev.mygrid.org.uk/issues/browse/T3-346>
 [image: Major]   T3-347 <http://dev.mygrid.org.uk/issues/browse/T3-347>

Deadlock when switching perspectives
<http://dev.mygrid.org.uk/issues/browse/T3-347>
 [image: Major]   T3-349 <http://dev.mygrid.org.uk/issues/browse/T3-349>

Deserializer does not enforce restrictions on the names of objects
<http://dev.mygrid.org.uk/issues/browse/T3-349>
 [image: Major]   T3-352 <http://dev.mygrid.org.uk/issues/browse/T3-352>

Need registry of developed plugins
<http://dev.mygrid.org.uk/issues/browse/T3-352>
 [image: Blocker]   T3-353 <http://dev.mygrid.org.uk/issues/browse/T3-353>

No Critical flag for processor
<http://dev.mygrid.org.uk/issues/browse/T3-353>
 [image: Minor]   T3-354 <http://dev.mygrid.org.uk/issues/browse/T3-354>

Ability to have "blocks" or "groups" of things in workflow
<http://dev.mygrid.org.uk/issues/browse/T3-354>
 [image: Major]   T3-355 <http://dev.mygrid.org.uk/issues/browse/T3-355>

Semantification <http://dev.mygrid.org.uk/issues/browse/T3-355>
 [image: Major]   T3-356 <http://dev.mygrid.org.uk/issues/browse/T3-356>

Installation should give indication of memory usage
<http://dev.mygrid.org.uk/issues/browse/T3-356>
 [image: Blocker]   T3-357 <http://dev.mygrid.org.uk/issues/browse/T3-357>

Support for other scripting languages
<http://dev.mygrid.org.uk/issues/browse/T3-357>
 [image: Major]   T3-358 <http://dev.mygrid.org.uk/issues/browse/T3-358>

Ability to bundle workflow, jars and perhaps data
<http://dev.mygrid.org.uk/issues/browse/T3-358>
 [image: Major]   T3-359 <http://dev.mygrid.org.uk/issues/browse/T3-359>

Webservice to generate a T2 workflow image from a T2 workflow document
<http://dev.mygrid.org.uk/issues/browse/T3-359>
 [image: Major]   T3-360 <http://dev.mygrid.org.uk/issues/browse/T3-360>

General Metadata service(s) for T2 workflows
<http://dev.mygrid.org.uk/issues/browse/T3-360>
 [image: Major]   T3-361 <http://dev.mygrid.org.uk/issues/browse/T3-361>

Support for creating a webservice from a workflow
<http://dev.mygrid.org.uk/issues/browse/T3-361>
 [image: Minor]   T3-362 <http://dev.mygrid.org.uk/issues/browse/T3-362>

Check-points for workflows <http://dev.mygrid.org.uk/issues/browse/T3-362>
 [image: Major]   T3-363 <http://dev.mygrid.org.uk/issues/browse/T3-363>

ConfigurationManagerTest writes to /tmp/configTests
<http://dev.mygrid.org.uk/issues/browse/T3-363>
 [image: Minor]   T3-364 <http://dev.mygrid.org.uk/issues/browse/T3-364>

net.sf.taverna.t2.workbench.configuration.ConfigurationManagerTest
hardcodes test directory <http://dev.mygrid.org.uk/issues/browse/T3-364>
 [image: Major]   T3-365 <http://dev.mygrid.org.uk/issues/browse/T3-365>

Test for scalability and memory/thread footprint
<http://dev.mygrid.org.uk/issues/browse/T3-365>
 [image: Critical]   T3-367 <http://dev.mygrid.org.uk/issues/browse/T3-367>

Setting up a scalability testing and measuring framework
<http://dev.mygrid.org.uk/issues/browse/T3-367>
 [image: Major]   T3-368 <http://dev.mygrid.org.uk/issues/browse/T3-368>

Create a set of test workflows (scalability testing)
<http://dev.mygrid.org.uk/issues/browse/T3-368>
 [image: Minor]   T3-369 <http://dev.mygrid.org.uk/issues/browse/T3-369>

Performance testing with intensive workflows
<http://dev.mygrid.org.uk/issues/browse/T3-369>
 [image: Minor]   T3-374 <http://dev.mygrid.org.uk/issues/browse/T3-374>

"Can't find factory for view class" exception for unknown activity classes
<http://dev.mygrid.org.uk/issues/browse/T3-374>
 [image: Trivial]   T3-375 <http://dev.mygrid.org.uk/issues/browse/T3-375>

Undo does not work for annotation
<http://dev.mygrid.org.uk/issues/browse/T3-375>
 [image: Major]   T3-377 <http://dev.mygrid.org.uk/issues/browse/T3-377>

Contextual view of port should show its connections
<http://dev.mygrid.org.uk/issues/browse/T3-377>
 [image: Minor]   T3-378 <http://dev.mygrid.org.uk/issues/browse/T3-378>

Ability to have more than one author field for a workflow
<http://dev.mygrid.org.uk/issues/browse/T3-378>
 [image: Minor]   T3-379 <http://dev.mygrid.org.uk/issues/browse/T3-379>

Description of merge <http://dev.mygrid.org.uk/issues/browse/T3-379>
 [image: Major]   T3-380 <http://dev.mygrid.org.uk/issues/browse/T3-380>

Input port example annotation should indicate that it's a value
<http://dev.mygrid.org.uk/issues/browse/T3-380>
 [image: Major]   T3-381 <http://dev.mygrid.org.uk/issues/browse/T3-381>

Ability to rename a workflow <http://dev.mygrid.org.uk/issues/browse/T3-381>
 [image: Major]   T3-382 <http://dev.mygrid.org.uk/issues/browse/T3-382>

Workflow input and output port details - configuration needed
<http://dev.mygrid.org.uk/issues/browse/T3-382>
 [image: Major]   T3-383 <http://dev.mygrid.org.uk/issues/browse/T3-383>

Specify format of values for workflow input ports
<http://dev.mygrid.org.uk/issues/browse/T3-383>
 [image: Major]   T3-384 <http://dev.mygrid.org.uk/issues/browse/T3-384>

Can't rename/remove processor from contextual view/configure
<http://dev.mygrid.org.uk/issues/browse/T3-384>
 [image: Minor]   T3-386 <http://dev.mygrid.org.uk/issues/browse/T3-386>

Change descriptions to red when workflow is changed
<http://dev.mygrid.org.uk/issues/browse/T3-386>
 [image: Minor]   T3-387 <http://dev.mygrid.org.uk/issues/browse/T3-387>

Ability to run a service <http://dev.mygrid.org.uk/issues/browse/T3-387>
 [image: Major]   T3-389 <http://dev.mygrid.org.uk/issues/browse/T3-389>

Annotations (mime-types) contextual view
<http://dev.mygrid.org.uk/issues/browse/T3-389>
 [image: Minor]   T3-390 <http://dev.mygrid.org.uk/issues/browse/T3-390>

Cannot undo changes to nested workflow
<http://dev.mygrid.org.uk/issues/browse/T3-390>
 [image: Minor]   T3-393 <http://dev.mygrid.org.uk/issues/browse/T3-393>

Ability to recover changes made to a workflow - covers autosave
<http://dev.mygrid.org.uk/issues/browse/T3-393>
 [image: Major]   T3-397 <http://dev.mygrid.org.uk/issues/browse/T3-397>

Deserialised workflow contains data link with a missing source - it was
still possible to run the workflow
<http://dev.mygrid.org.uk/issues/browse/T3-397>
 [image: Minor]   T3-398 <http://dev.mygrid.org.uk/issues/browse/T3-398>

Improve error and status dialogs
<http://dev.mygrid.org.uk/issues/browse/T3-398>
 [image: Major]   T3-399 <http://dev.mygrid.org.uk/issues/browse/T3-399>

Placing of warning/retry/loop icons in diagram
<http://dev.mygrid.org.uk/issues/browse/T3-399>
 [image: Major]   T3-401 <http://dev.mygrid.org.uk/issues/browse/T3-401>

Placeholders for loading <http://dev.mygrid.org.uk/issues/browse/T3-401>
 [image: Major]   T3-403 <http://dev.mygrid.org.uk/issues/browse/T3-403>

Link error/status to external possible solutions
<http://dev.mygrid.org.uk/issues/browse/T3-403>
 [image: Major]   T3-407 <http://dev.mygrid.org.uk/issues/browse/T3-407>

Some buttons remain highlighted
<http://dev.mygrid.org.uk/issues/browse/T3-407>
 [image: Minor]   T3-411 <http://dev.mygrid.org.uk/issues/browse/T3-411>

Users want information and error message pop-ups to appear in the middle of
the workbench not in the corner
<http://dev.mygrid.org.uk/issues/browse/T3-411>
 [image: Major]   T3-414 <http://dev.mygrid.org.uk/issues/browse/T3-414>

OutOfMemoryException on multiple Replace Nested Workflows / Import
<http://dev.mygrid.org.uk/issues/browse/T3-414>
 [image: Major]   T3-415 <http://dev.mygrid.org.uk/issues/browse/T3-415>

Import select-source-dialogue line-wraps on long titles
<http://dev.mygrid.org.uk/issues/browse/T3-415>
 [image: Minor]   T3-416 <http://dev.mygrid.org.uk/issues/browse/T3-416>

Double-clicking Run icon runs workflow w/no inputs twice
<http://dev.mygrid.org.uk/issues/browse/T3-416>
 [image: Minor]   T3-417 <http://dev.mygrid.org.uk/issues/browse/T3-417>

Macros and bound buttons <http://dev.mygrid.org.uk/issues/browse/T3-417>
 [image: Minor]   T3-418 <http://dev.mygrid.org.uk/issues/browse/T3-418>

Workflow templates <http://dev.mygrid.org.uk/issues/browse/T3-418>
 [image: Major]   T3-420 <http://dev.mygrid.org.uk/issues/browse/T3-420>

Taverna personalisation - prompt user for name and organisation the first
time and then automatically use this info to populate workflow metadata
<http://dev.mygrid.org.uk/issues/browse/T3-420>
 [image: Major]   T3-421 <http://dev.mygrid.org.uk/issues/browse/T3-421>

Ability to handle dropping of things from the desktop/elsewhere
<http://dev.mygrid.org.uk/issues/browse/T3-421>
 [image: Major]   T3-423 <http://dev.mygrid.org.uk/issues/browse/T3-423>

Remember user decisions preference in dialogue boxes
<http://dev.mygrid.org.uk/issues/browse/T3-423>
 [image: Minor]   T3-425 <http://dev.mygrid.org.uk/issues/browse/T3-425>

Add mime types to ports <http://dev.mygrid.org.uk/issues/browse/T3-425>
 [image: Major]   T3-426 <http://dev.mygrid.org.uk/issues/browse/T3-426>

Removing links to merge leaves single merge
<http://dev.mygrid.org.uk/issues/browse/T3-426>
 [image: Minor]   T3-428 <http://dev.mygrid.org.uk/issues/browse/T3-428>

Better error reporting to the users as to the cause of wf run/opening
failure <http://dev.mygrid.org.uk/issues/browse/T3-428>
 [image: Major]   T3-430 <http://dev.mygrid.org.uk/issues/browse/T3-430>

Annotation should be possible when creating ports
<http://dev.mygrid.org.uk/issues/browse/T3-430>
 [image: Major]   T3-432 <http://dev.mygrid.org.uk/issues/browse/T3-432>

Make sure 1.6 SwingWorker is used
<http://dev.mygrid.org.uk/issues/browse/T3-432>
 [image: Major]   T3-434 <http://dev.mygrid.org.uk/issues/browse/T3-434>

Highlight when a service definition has changed
<http://dev.mygrid.org.uk/issues/browse/T3-434>
 [image: Major]   T3-435 <http://dev.mygrid.org.uk/issues/browse/T3-435>

Indicating workflows (top level menu) could improve handling of long
filepaths <http://dev.mygrid.org.uk/issues/browse/T3-435>
 [image: Major]   T3-437 <http://dev.mygrid.org.uk/issues/browse/T3-437>

Shutdown message should be in a dialog
<http://dev.mygrid.org.uk/issues/browse/T3-437>
 [image: Trivial]   T3-438 <http://dev.mygrid.org.uk/issues/browse/T3-438>

Remote execution facility <http://dev.mygrid.org.uk/issues/browse/T3-438>
 [image: Major]   T3-439 <http://dev.mygrid.org.uk/issues/browse/T3-439>

Allow linking from a merge <http://dev.mygrid.org.uk/issues/browse/T3-439>
 [image: Major]   T3-440 <http://dev.mygrid.org.uk/issues/browse/T3-440>

Multi-activity looping <http://dev.mygrid.org.uk/issues/browse/T3-440>
 [image: Major]   T3-441 <http://dev.mygrid.org.uk/issues/browse/T3-441>

Workflow open file dialog should remember its size
<http://dev.mygrid.org.uk/issues/browse/T3-441>
 [image: Major]   T3-442 <http://dev.mygrid.org.uk/issues/browse/T3-442>

Default values for service ports should be available
<http://dev.mygrid.org.uk/issues/browse/T3-442>
 [image: Critical]   T3-443 <http://dev.mygrid.org.uk/issues/browse/T3-443>

Pop-ups don't appear on correct monitor with dual-screen setup
<http://dev.mygrid.org.uk/issues/browse/T3-443>
 [image: Minor]   T3-445 <http://dev.mygrid.org.uk/issues/browse/T3-445>

Error messages should suggest a solution rather than just indicate the
problem <http://dev.mygrid.org.uk/issues/browse/T3-445>
 [image: Major]   T3-446 <http://dev.mygrid.org.uk/issues/browse/T3-446>

Allow users to specify how to cope with error fragile services
<http://dev.mygrid.org.uk/issues/browse/T3-446>
 [image: Major]   T3-449 <http://dev.mygrid.org.uk/issues/browse/T3-449>

Diagram locations should remember directories etc.
<http://dev.mygrid.org.uk/issues/browse/T3-449>
 [image: Major]   T3-452 <http://dev.mygrid.org.uk/issues/browse/T3-452>

Need ability to update/replace service
<http://dev.mygrid.org.uk/issues/browse/T3-452>
 [image: Major]   T3-453 <http://dev.mygrid.org.uk/issues/browse/T3-453>

Introductory overlay mode <http://dev.mygrid.org.uk/issues/browse/T3-453>
 [image: Major]   T3-454 <http://dev.mygrid.org.uk/issues/browse/T3-454>

Execution time service lookup
<http://dev.mygrid.org.uk/issues/browse/T3-454>
 [image: Major]   T3-456 <http://dev.mygrid.org.uk/issues/browse/T3-456>

Workflow auditor <http://dev.mygrid.org.uk/issues/browse/T3-456>
 [image: Major]   T3-457 <http://dev.mygrid.org.uk/issues/browse/T3-457>

Registration should check for uniqueness
<http://dev.mygrid.org.uk/issues/browse/T3-457>
 [image: Critical]   T3-458 <http://dev.mygrid.org.uk/issues/browse/T3-458>

double clicking on run icon runs it twice
<http://dev.mygrid.org.uk/issues/browse/T3-458>
 [image: Trivial]   T3-459 <http://dev.mygrid.org.uk/issues/browse/T3-459>

Refactor Configurable & AbstractConfigurable out of workbench-api into utils
<http://dev.mygrid.org.uk/issues/browse/T3-459>
 [image: Major]   T3-461 <http://dev.mygrid.org.uk/issues/browse/T3-461>

No highlighted text in user input fields
<http://dev.mygrid.org.uk/issues/browse/T3-461>
 [image: Minor]   T3-471 <http://dev.mygrid.org.uk/issues/browse/T3-471>

Control link icon should be changed
<http://dev.mygrid.org.uk/issues/browse/T3-471>
 [image: Major]   T3-477 <http://dev.mygrid.org.uk/issues/browse/T3-477>

Iteration strategy requires connections to have been made
<http://dev.mygrid.org.uk/issues/browse/T3-477>
 [image: Major]   T3-479 <http://dev.mygrid.org.uk/issues/browse/T3-479>

Iteration strategy editor requires dot/cross to have subnodes before ports
can be dragged into them <http://dev.mygrid.org.uk/issues/browse/T3-479>
 [image: Critical]   T3-481 <http://dev.mygrid.org.uk/issues/browse/T3-481>

Adding/removing a port does not cause iteration strategy update
<http://dev.mygrid.org.uk/issues/browse/T3-481>
 [image: Critical]   T3-482 <http://dev.mygrid.org.uk/issues/browse/T3-482>

Iteration strategy should allow configuration of the outputs as well
<http://dev.mygrid.org.uk/issues/browse/T3-482>
 [image: Major]   T3-484 <http://dev.mygrid.org.uk/issues/browse/T3-484>

Remove node in iteration strategy - meaning not clear
<http://dev.mygrid.org.uk/issues/browse/T3-484>
 [image: Major]   T3-491 <http://dev.mygrid.org.uk/issues/browse/T3-491>

Iteration strategy editor is non-intuitive
<http://dev.mygrid.org.uk/issues/browse/T3-491>
 [image: Critical]   T3-492 <http://dev.mygrid.org.uk/issues/browse/T3-492>

Editor should encourage need to configure an iteration strategy
<http://dev.mygrid.org.uk/issues/browse/T3-492>
 [image: Minor]   T3-493 <http://dev.mygrid.org.uk/issues/browse/T3-493>

Tick box for feedback sometimes disappears
<http://dev.mygrid.org.uk/issues/browse/T3-493>
 [image: Major]   T3-496 <http://dev.mygrid.org.uk/issues/browse/T3-496>

Loop accordion section needs better layout
<http://dev.mygrid.org.uk/issues/browse/T3-496>
 [image: Major]   T3-497 <http://dev.mygrid.org.uk/issues/browse/T3-497>

Processor does not have ports for unconnected ports of the activity
<http://dev.mygrid.org.uk/issues/browse/T3-497>
 [image: Critical]   T3-500 <http://dev.mygrid.org.uk/issues/browse/T3-500>

Configure available when no selection
<http://dev.mygrid.org.uk/issues/browse/T3-500>
 [image: Trivial]   T3-502 <http://dev.mygrid.org.uk/issues/browse/T3-502>

Save location should be remembered
<http://dev.mygrid.org.uk/issues/browse/T3-502>
 [image: Major]   T3-503 <http://dev.mygrid.org.uk/issues/browse/T3-503>

"Merge workflow" menu item should be moved and have icon
<http://dev.mygrid.org.uk/issues/browse/T3-503>
 [image: Major]   T3-506 <http://dev.mygrid.org.uk/issues/browse/T3-506>

Tree for workflows <http://dev.mygrid.org.uk/issues/browse/T3-506>
 [image: Major]   T3-509 <http://dev.mygrid.org.uk/issues/browse/T3-509>

Need to sort out workflow name v title v file location
<http://dev.mygrid.org.uk/issues/browse/T3-509>
 [image: Critical]   T3-510 <http://dev.mygrid.org.uk/issues/browse/T3-510>

Need to show depth information
<http://dev.mygrid.org.uk/issues/browse/T3-510>
 [image: Major]   T3-511 <http://dev.mygrid.org.uk/issues/browse/T3-511>

Need better indication of iterations
<http://dev.mygrid.org.uk/issues/browse/T3-511>
 [image: Major]   T3-513 <http://dev.mygrid.org.uk/issues/browse/T3-513>

Workflow run diagram should be same as for design
<http://dev.mygrid.org.uk/issues/browse/T3-513>
 [image: Major]   T3-515 <http://dev.mygrid.org.uk/issues/browse/T3-515>

Distinguish between degree of failure in service invocation
<http://dev.mygrid.org.uk/issues/browse/T3-515>
 [image: Major]   T3-516 <http://dev.mygrid.org.uk/issues/browse/T3-516>

Get error information for services with no output ports
<http://dev.mygrid.org.uk/issues/browse/T3-516>
 [image: Major]   T3-517 <http://dev.mygrid.org.uk/issues/browse/T3-517>

Distinguish between cause of failure in service invocation
<http://dev.mygrid.org.uk/issues/browse/T3-517>
 [image: Major]   T3-521 <http://dev.mygrid.org.uk/issues/browse/T3-521>

Closing nested workflow goes back to last opened workflow
<http://dev.mygrid.org.uk/issues/browse/T3-521>
 [image: Major]   T3-522 <http://dev.mygrid.org.uk/issues/browse/T3-522>

Inline editing of nested workflows
<http://dev.mygrid.org.uk/issues/browse/T3-522>
 [image: Major]   T3-523 <http://dev.mygrid.org.uk/issues/browse/T3-523>

Merges should be the exception
<http://dev.mygrid.org.uk/issues/browse/T3-523>
 [image: Major]   T3-525 <http://dev.mygrid.org.uk/issues/browse/T3-525>

Editing nested wfs needs reworking - when importing from a file the
original file should be modified or user warned
<http://dev.mygrid.org.uk/issues/browse/T3-525>
 [image: Major]   T3-527 <http://dev.mygrid.org.uk/issues/browse/T3-527>

myExperiment upload has empty title/description - not showing workflow
metadata <http://dev.mygrid.org.uk/issues/browse/T3-527>
 [image: Minor]   T3-528 <http://dev.mygrid.org.uk/issues/browse/T3-528>

Workflows opened from myExperiment do not have proper source
<http://dev.mygrid.org.uk/issues/browse/T3-528>
 [image: Major]   T3-529 <http://dev.mygrid.org.uk/issues/browse/T3-529>

Import from myExperiment can be confusing
<http://dev.mygrid.org.uk/issues/browse/T3-529>
 [image: Minor]   T3-530 <http://dev.mygrid.org.uk/issues/browse/T3-530>

Improve return of matches <http://dev.mygrid.org.uk/issues/browse/T3-530>
 [image: Major]   T3-531 <http://dev.mygrid.org.uk/issues/browse/T3-531>

syncronise the names of updated workflows in the history with the
corresponding name on myExp <http://dev.mygrid.org.uk/issues/browse/T3-531>
 [image: Major]   T3-532 <http://dev.mygrid.org.uk/issues/browse/T3-532>

Auto-completion of tags etc. <http://dev.mygrid.org.uk/issues/browse/T3-532>
 [image: Major]   T3-533 <http://dev.mygrid.org.uk/issues/browse/T3-533>

The myExperiment perspective should filter out broken workflows
<http://dev.mygrid.org.uk/issues/browse/T3-533>
 [image: Major]   T3-534 <http://dev.mygrid.org.uk/issues/browse/T3-534>

Not obvious when logged in <http://dev.mygrid.org.uk/issues/browse/T3-534>
 [image: Major]   T3-536 <http://dev.mygrid.org.uk/issues/browse/T3-536>

prompt user to login when trying to view a "history item" whilst logged out
<http://dev.mygrid.org.uk/issues/browse/T3-536>
 [image: Critical]   T3-538 <http://dev.mygrid.org.uk/issues/browse/T3-538>

user request: workflow upload history
<http://dev.mygrid.org.uk/issues/browse/T3-538>
 [image: Major]   T3-539 <http://dev.mygrid.org.uk/issues/browse/T3-539>

Need workflow run progress report
<http://dev.mygrid.org.uk/issues/browse/T3-539>
 [image: Blocker]   T3-541 <http://dev.mygrid.org.uk/issues/browse/T3-541>

Diagram gets small for previous runs
<http://dev.mygrid.org.uk/issues/browse/T3-541>
 [image: Major]   T3-542 <http://dev.mygrid.org.uk/issues/browse/T3-542>

Selection on diagram shared between previous runs of same workflow
<http://dev.mygrid.org.uk/issues/browse/T3-542>
 [image: Major]   T3-543 <http://dev.mygrid.org.uk/issues/browse/T3-543>

Intelligent re-run <http://dev.mygrid.org.uk/issues/browse/T3-543>
 [image: Major]   T3-545 <http://dev.mygrid.org.uk/issues/browse/T3-545>

Plugin Manager "Close" button does not install plugin
<http://dev.mygrid.org.uk/issues/browse/T3-545>
 [image: Minor]   T3-548 <http://dev.mygrid.org.uk/issues/browse/T3-548>

Plugin manager could be more informative
<http://dev.mygrid.org.uk/issues/browse/T3-548>
 [image: Minor]   T3-549 <http://dev.mygrid.org.uk/issues/browse/T3-549>

Text for Updates and Plugins needs improving
<http://dev.mygrid.org.uk/issues/browse/T3-549>
 [image: Major]   T3-551 <http://dev.mygrid.org.uk/issues/browse/T3-551>

ColourManager not extensible by plugins
<http://dev.mygrid.org.uk/issues/browse/T3-551>
 [image: Major]   T3-553 <http://dev.mygrid.org.uk/issues/browse/T3-553>

Diagram preferences option for collapsing/expanding nested workflows by
default <http://dev.mygrid.org.uk/issues/browse/T3-553>
 [image: Major]   T3-554 <http://dev.mygrid.org.uk/issues/browse/T3-554>

Preferences does not fit into standard mechanism
<http://dev.mygrid.org.uk/issues/browse/T3-554>
 [image: Major]   T3-557 <http://dev.mygrid.org.uk/issues/browse/T3-557>

Workbench preferences needs improving
<http://dev.mygrid.org.uk/issues/browse/T3-557>
 [image: Major]   T3-560 <http://dev.mygrid.org.uk/issues/browse/T3-560>

Reset to factory settings <http://dev.mygrid.org.uk/issues/browse/T3-560>
 [image: Major]   T3-561 <http://dev.mygrid.org.uk/issues/browse/T3-561>

Preference settings should be available as buttons in appropriate places
<http://dev.mygrid.org.uk/issues/browse/T3-561>
 [image: Major]   T3-562 <http://dev.mygrid.org.uk/issues/browse/T3-562>

Put preferences in top level menu
<http://dev.mygrid.org.uk/issues/browse/T3-562>
 [image: Major]   T3-566 <http://dev.mygrid.org.uk/issues/browse/T3-566>

ConcurrentModificationException in WorkflowRunProgressMonitor
<http://dev.mygrid.org.uk/issues/browse/T3-566>
 [image: Minor]   T3-568 <http://dev.mygrid.org.uk/issues/browse/T3-568>

Rerun with values that caused errors
<http://dev.mygrid.org.uk/issues/browse/T3-568>
 [image: Major]   T3-569 <http://dev.mygrid.org.uk/issues/browse/T3-569>

Search for a value in a workflow run
<http://dev.mygrid.org.uk/issues/browse/T3-569>
 [image: Major]   T3-573 <http://dev.mygrid.org.uk/issues/browse/T3-573>

OutOfMemoryError <http://dev.mygrid.org.uk/issues/browse/T3-573>
 [image: Major]   T3-575 <http://dev.mygrid.org.uk/issues/browse/T3-575>

Renderer catches reference exception but ignores it
<http://dev.mygrid.org.uk/issues/browse/T3-575>
 [image: Major]   T3-577 <http://dev.mygrid.org.uk/issues/browse/T3-577>

Renderer area is too small <http://dev.mygrid.org.uk/issues/browse/T3-577>
 [image: Major]   T3-578 <http://dev.mygrid.org.uk/issues/browse/T3-578>

Zoom in rendered image <http://dev.mygrid.org.uk/issues/browse/T3-578>
 [image: Major]   T3-580 <http://dev.mygrid.org.uk/issues/browse/T3-580>

Double click to expand error document
<http://dev.mygrid.org.uk/issues/browse/T3-580>
 [image: Major]   T3-582 <http://dev.mygrid.org.uk/issues/browse/T3-582>

Ability to see flattened version of tree of values
<http://dev.mygrid.org.uk/issues/browse/T3-582>
 [image: Major]   T3-583 <http://dev.mygrid.org.uk/issues/browse/T3-583>

Display the endpoint for URI Strings
<http://dev.mygrid.org.uk/issues/browse/T3-583>
 [image: Major]   T3-585 <http://dev.mygrid.org.uk/issues/browse/T3-585>

Show more information about problems in nested workflow
<http://dev.mygrid.org.uk/issues/browse/T3-585>
 [image: Major]   T3-586 <http://dev.mygrid.org.uk/issues/browse/T3-586>

Problems with nested workflow as a workflow v as a service
<http://dev.mygrid.org.uk/issues/browse/T3-586>
 [image: Major]   T3-588 <http://dev.mygrid.org.uk/issues/browse/T3-588>

Switching data items in the renderer's panel in the Result Perspective does
not reset the scroll bar to the top
<http://dev.mygrid.org.uk/issues/browse/T3-588>
 [image: Major]   T3-592 <http://dev.mygrid.org.uk/issues/browse/T3-592>

Save as Directory skips missing items
<http://dev.mygrid.org.uk/issues/browse/T3-592>
 [image: Minor]   T3-594 <http://dev.mygrid.org.uk/issues/browse/T3-594>

Saving of large data is problematic
<http://dev.mygrid.org.uk/issues/browse/T3-594>
 [image: Major]   T3-596 <http://dev.mygrid.org.uk/issues/browse/T3-596>

"Waiting for data" for empty lists from dot product
<http://dev.mygrid.org.uk/issues/browse/T3-596>
 [image: Critical]   T3-598 <http://dev.mygrid.org.uk/issues/browse/T3-598>

Total number of iterations displayed on services in nested workflow can be
slightly wrong <http://dev.mygrid.org.uk/issues/browse/T3-598>
 [image: Major]   T3-599 <http://dev.mygrid.org.uk/issues/browse/T3-599>

"Save value" (And "Save all values") don't use/guess filename extensions
<http://dev.mygrid.org.uk/issues/browse/T3-599>
 [image: Major]   T3-600 <http://dev.mygrid.org.uk/issues/browse/T3-600>

"Waiting for iterations" in intermediate values for empty lists from dot
product <http://dev.mygrid.org.uk/issues/browse/T3-600>
 [image: Major]   T3-604 <http://dev.mygrid.org.uk/issues/browse/T3-604>

See all results in one go <http://dev.mygrid.org.uk/issues/browse/T3-604>
 [image: Major]   T3-607 <http://dev.mygrid.org.uk/issues/browse/T3-607>

Need to be able to see results as a table and possibly manipulate them
<http://dev.mygrid.org.uk/issues/browse/T3-607>
 [image: Critical]   T3-610 <http://dev.mygrid.org.uk/issues/browse/T3-610>

Service sets from 2.3 cannot be imported into 2.4
<http://dev.mygrid.org.uk/issues/browse/T3-610>
 [image: Major]   T3-612 <http://dev.mygrid.org.uk/issues/browse/T3-612>

Can't directly invoke an activity from the activity palette
<http://dev.mygrid.org.uk/issues/browse/T3-612>
 [image: Critical]   T3-613 <http://dev.mygrid.org.uk/issues/browse/T3-613>

returning an empty array with ServiceDescription.getIdentifyingData()
should trigger an exception <http://dev.mygrid.org.uk/issues/browse/T3-613>
 [image: Minor]   T3-614 <http://dev.mygrid.org.uk/issues/browse/T3-614>

Default service provider dialog can sometimes not recognize newline
<http://dev.mygrid.org.uk/issues/browse/T3-614>
 [image: Major]   T3-615 <http://dev.mygrid.org.uk/issues/browse/T3-615>

Automatically include services from opened workflow
<http://dev.mygrid.org.uk/issues/browse/T3-615>
 [image: Major]   T3-619 <http://dev.mygrid.org.uk/issues/browse/T3-619>

Rename service provider <http://dev.mygrid.org.uk/issues/browse/T3-619>
 [image: Major]   T3-624 <http://dev.mygrid.org.uk/issues/browse/T3-624>

Drag and drop symbol unclear <http://dev.mygrid.org.uk/issues/browse/T3-624>
 [image: Major]   T3-627 <http://dev.mygrid.org.uk/issues/browse/T3-627>

Refresh capability for service panel
<http://dev.mygrid.org.uk/issues/browse/T3-627>
 [image: Major]   T3-629 <http://dev.mygrid.org.uk/issues/browse/T3-629>

Export diagram uses wrong fonts
<http://dev.mygrid.org.uk/issues/browse/T3-629>
 [image: Major]   T3-630 <http://dev.mygrid.org.uk/issues/browse/T3-630>

Misleading Text cursor showed while hovering over processor name
<http://dev.mygrid.org.uk/issues/browse/T3-630>
 [image: Minor]   T3-631 <http://dev.mygrid.org.uk/issues/browse/T3-631>

Nested workflow with no inputs is shown incorrectly in diagram
<http://dev.mygrid.org.uk/issues/browse/T3-631>
 [image: Major]   T3-632 <http://dev.mygrid.org.uk/issues/browse/T3-632>

Zoom bug with expanded ports <http://dev.mygrid.org.uk/issues/browse/T3-632>
 [image: Minor]   T3-633 <http://dev.mygrid.org.uk/issues/browse/T3-633>

Multiple select and copy+paste of workflow items
<http://dev.mygrid.org.uk/issues/browse/T3-633>
 [image: Major]   T3-634 <http://dev.mygrid.org.uk/issues/browse/T3-634>

Diagram does not indicate implicit iteration
<http://dev.mygrid.org.uk/issues/browse/T3-634>
 [image: Major]   T3-635 <http://dev.mygrid.org.uk/issues/browse/T3-635>

Hide boring/shim processors <http://dev.mygrid.org.uk/issues/browse/T3-635>
 [image: Minor]   T3-640 <http://dev.mygrid.org.uk/issues/browse/T3-640>

Reset diagram in diagram should be "Show all"
<http://dev.mygrid.org.uk/issues/browse/T3-640>
 [image: Major]   T3-641 <http://dev.mygrid.org.uk/issues/browse/T3-641>

Add ports showing etc. to menu
<http://dev.mygrid.org.uk/issues/browse/T3-641>
 [image: Minor]   T3-642 <http://dev.mygrid.org.uk/issues/browse/T3-642>

Clicking on a link should highlight linked processors/ports
<http://dev.mygrid.org.uk/issues/browse/T3-642>
 [image: Major]   T3-643 <http://dev.mygrid.org.uk/issues/browse/T3-643>

Option to show portnames on links when processors are not expanded.
<http://dev.mygrid.org.uk/issues/browse/T3-643>
 [image: Major]   T3-645 <http://dev.mygrid.org.uk/issues/browse/T3-645>

Zoom in/out using mouse wanted and zoom to area
<http://dev.mygrid.org.uk/issues/browse/T3-645>
 [image: Minor]   T3-648 <http://dev.mygrid.org.uk/issues/browse/T3-648>

Investigate if icon can be put in service box
<http://dev.mygrid.org.uk/issues/browse/T3-648>
 [image: Major]   T3-649 <http://dev.mygrid.org.uk/issues/browse/T3-649>

Have show types in diagram <http://dev.mygrid.org.uk/issues/browse/T3-649>
 [image: Major]   T3-651 <http://dev.mygrid.org.uk/issues/browse/T3-651>

Allow ordering of ports of a workflow and service
<http://dev.mygrid.org.uk/issues/browse/T3-651>
 [image: Major]   T3-652 <http://dev.mygrid.org.uk/issues/browse/T3-652>

Merge name should be shown on diagram
<http://dev.mygrid.org.uk/issues/browse/T3-652>
 [image: Major]   T3-653 <http://dev.mygrid.org.uk/issues/browse/T3-653>

Empty dataflow should hint about adding activities
<http://dev.mygrid.org.uk/issues/browse/T3-653>
 [image: Minor]   T3-654 <http://dev.mygrid.org.uk/issues/browse/T3-654>

Add workflow input port dialog - depth issues
<http://dev.mygrid.org.uk/issues/browse/T3-654>
 [image: Major]   T3-655 <http://dev.mygrid.org.uk/issues/browse/T3-655>

Ability to see "true" processor information on diagram
<http://dev.mygrid.org.uk/issues/browse/T3-655>
 [image: Major]   T3-657 <http://dev.mygrid.org.uk/issues/browse/T3-657>

Double-click on processor or port should bring up configuration
<http://dev.mygrid.org.uk/issues/browse/T3-657>
 [image: Major]   T3-658 <http://dev.mygrid.org.uk/issues/browse/T3-658>

Legend, overlay and/or labels for diagram
<http://dev.mygrid.org.uk/issues/browse/T3-658>
 [image: Major]   T3-659 <http://dev.mygrid.org.uk/issues/browse/T3-659>

Several views of same workflow
<http://dev.mygrid.org.uk/issues/browse/T3-659>
 [image: Major]   T3-660 <http://dev.mygrid.org.uk/issues/browse/T3-660>

Usefulness of "blob" diagram view should be examined
<http://dev.mygrid.org.uk/issues/browse/T3-660>
 [image: Major]   T3-661 <http://dev.mygrid.org.uk/issues/browse/T3-661>

Clicking on a processor port should highlight links
<http://dev.mygrid.org.uk/issues/browse/T3-661>
 [image: Major]   T3-662 <http://dev.mygrid.org.uk/issues/browse/T3-662>

Multiple deletes would be a good idea
<http://dev.mygrid.org.uk/issues/browse/T3-662>
 [image: Major]   T3-663 <http://dev.mygrid.org.uk/issues/browse/T3-663>

Automatically exposing processor ports
<http://dev.mygrid.org.uk/issues/browse/T3-663>
 [image: Major]   T3-664 <http://dev.mygrid.org.uk/issues/browse/T3-664>

Multiple selection would be useful
<http://dev.mygrid.org.uk/issues/browse/T3-664>
 [image: Major]   T3-665 <http://dev.mygrid.org.uk/issues/browse/T3-665>

Difficult to select a link for removal/change
<http://dev.mygrid.org.uk/issues/browse/T3-665>
 [image: Critical]   T3-666 <http://dev.mygrid.org.uk/issues/browse/T3-666>

Need to improve highlighting indication
<http://dev.mygrid.org.uk/issues/browse/T3-666>
 [image: Major]   T3-667 <http://dev.mygrid.org.uk/issues/browse/T3-667>

Workflow explorer should be consistent in clicking
<http://dev.mygrid.org.uk/issues/browse/T3-667>
 [image: Major]   T3-668 <http://dev.mygrid.org.uk/issues/browse/T3-668>

Very tiny diagram in Run dialogue for small workflows
<http://dev.mygrid.org.uk/issues/browse/T3-668>
 [image: Minor]   T3-670 <http://dev.mygrid.org.uk/issues/browse/T3-670>

File and URL data are not saved correctly in Baclava (for run panel)
<http://dev.mygrid.org.uk/issues/browse/T3-670>
 [image: Major]   T3-671 <http://dev.mygrid.org.uk/issues/browse/T3-671>

Support optional workflow input ports
<http://dev.mygrid.org.uk/issues/browse/T3-671>
 [image: Minor]   T3-673 <http://dev.mygrid.org.uk/issues/browse/T3-673>

Ability to run a nested workflow
<http://dev.mygrid.org.uk/issues/browse/T3-673>
 [image: Major]   T3-674 <http://dev.mygrid.org.uk/issues/browse/T3-674>

Allow running workflow with list inputs without modifying input port
<http://dev.mygrid.org.uk/issues/browse/T3-674>
 [image: Minor]   T3-682 <http://dev.mygrid.org.uk/issues/browse/T3-682>

Distinguish between sub-lists in launch panel
<http://dev.mygrid.org.uk/issues/browse/T3-682>
 [image: Major]   T3-684 <http://dev.mygrid.org.uk/issues/browse/T3-684>

Edit workflow annotations within launch panel
<http://dev.mygrid.org.uk/issues/browse/T3-684>
 [image: Major]   T3-687 <http://dev.mygrid.org.uk/issues/browse/T3-687>

Enumeration of values for processor port
<http://dev.mygrid.org.uk/issues/browse/T3-687>
 [image: Major]   T3-690 <http://dev.mygrid.org.uk/issues/browse/T3-690>

Run -> Load previous values file dialogue should remember location
<http://dev.mygrid.org.uk/issues/browse/T3-690>
 [image: Minor]   T3-693 <http://dev.mygrid.org.uk/issues/browse/T3-693>

Configure action for nested workflow is incorrect/inconsistent
<http://dev.mygrid.org.uk/issues/browse/T3-693>
 [image: Major]   T3-698 <http://dev.mygrid.org.uk/issues/browse/T3-698>

Renaming of ports of nested workflows should be reflected
<http://dev.mygrid.org.uk/issues/browse/T3-698>
 [image: Major]   T3-722 <http://dev.mygrid.org.uk/issues/browse/T3-722>

Healthchecker does not correctly re-validate nested workflows
<http://dev.mygrid.org.uk/issues/browse/T3-722>
 [image: Major]   T3-723 <http://dev.mygrid.org.uk/issues/browse/T3-723>

Taverna repeats unauthorized HTTP requests with saved credentials
<http://dev.mygrid.org.uk/issues/browse/T3-723>
 [image: Major]   T3-728 <http://dev.mygrid.org.uk/issues/browse/T3-728>

Consider replacing net.sf.taverna.t2.lang.observer
<http://dev.mygrid.org.uk/issues/browse/T3-728>
 [image: Major]   T3-743 <http://dev.mygrid.org.uk/issues/browse/T3-743>

Add "search for component" capability
<http://dev.mygrid.org.uk/issues/browse/T3-743>
 [image: Minor]   T3-744 <http://dev.mygrid.org.uk/issues/browse/T3-744>

Consistency health check for component connection
<http://dev.mygrid.org.uk/issues/browse/T3-744>
 [image: Minor]   T3-747 <http://dev.mygrid.org.uk/issues/browse/T3-747>

Mock data from components <http://dev.mygrid.org.uk/issues/browse/T3-747>
 [image: Minor]   T3-751 <http://dev.mygrid.org.uk/issues/browse/T3-751>

Extend component profile to support provenance specification
<http://dev.mygrid.org.uk/issues/browse/T3-751>
 [image: Major]   T3-753 <http://dev.mygrid.org.uk/issues/browse/T3-753>

Look at how example usage can be associated with a component
<http://dev.mygrid.org.uk/issues/browse/T3-753>
 [image: Minor]   T3-757 <http://dev.mygrid.org.uk/issues/browse/T3-757>

Check actual data against annotation
<http://dev.mygrid.org.uk/issues/browse/T3-757>
 [image: Minor]   T3-758 <http://dev.mygrid.org.uk/issues/browse/T3-758>

Extract dependency information
<http://dev.mygrid.org.uk/issues/browse/T3-758>
 [image: Major]   T3-759 <http://dev.mygrid.org.uk/issues/browse/T3-759>

Ensure availability of semantic annotation without component profile
<http://dev.mygrid.org.uk/issues/browse/T3-759>
 [image: Critical]   T3-760 <http://dev.mygrid.org.uk/issues/browse/T3-760>

Allow semantic annotation of runs
<http://dev.mygrid.org.uk/issues/browse/T3-760>
 [image: Major]   T3-761 <http://dev.mygrid.org.uk/issues/browse/T3-761>

Support replay <http://dev.mygrid.org.uk/issues/browse/T3-761>
 [image: Minor]   T3-762 <http://dev.mygrid.org.uk/issues/browse/T3-762>

Examine SWO and EDAM <http://dev.mygrid.org.uk/issues/browse/T3-762>
 [image: Minor]   T3-765 <http://dev.mygrid.org.uk/issues/browse/T3-765>

Examine component wizard requirements
<http://dev.mygrid.org.uk/issues/browse/T3-765>
 [image: Minor]   T3-766 <http://dev.mygrid.org.uk/issues/browse/T3-766>

Decide what to do about current annotations
<http://dev.mygrid.org.uk/issues/browse/T3-766>
 [image: Critical]   T3-769 <http://dev.mygrid.org.uk/issues/browse/T3-769>

Component profile deletion <http://dev.mygrid.org.uk/issues/browse/T3-769>
 [image: Trivial]   T3-782 <http://dev.mygrid.org.uk/issues/browse/T3-782>

Can't handle WSDL requiring soap:Header in input message
<http://dev.mygrid.org.uk/issues/browse/T3-782>
 [image: Major]   T3-784 <http://dev.mygrid.org.uk/issues/browse/T3-784>

Allow changing of sharing for compont families and components
<http://dev.mygrid.org.uk/issues/browse/T3-784>
 [image: Major]   T3-797 <http://dev.mygrid.org.uk/issues/browse/T3-797>

Do not read Java's default CA certificates using a file path but rather
using the Java API (the first time it is imported to the Taverna's
Truststore). Also need a way to refresh them after Java update?
<http://dev.mygrid.org.uk/issues/browse/T3-797>
 [image: Minor]   T3-798 <http://dev.mygrid.org.uk/issues/browse/T3-798>

Move exporting certificates from Cred Manager UI to Cred Manager
<http://dev.mygrid.org.uk/issues/browse/T3-798>
 [image: Major]   T3-810 <http://dev.mygrid.org.uk/issues/browse/T3-810>

Use <link> elements in interaction pages
<http://dev.mygrid.org.uk/issues/browse/T3-810>
 [image: Minor]   T3-813 <http://dev.mygrid.org.uk/issues/browse/T3-813>

Tool to make components work in "offline" mode
<http://dev.mygrid.org.uk/issues/browse/T3-813>
 [image: Critical]   T3-909 <http://dev.mygrid.org.uk/issues/browse/T3-909>

Loop feedback stops working when a port is renamed
<http://dev.mygrid.org.uk/issues/browse/T3-909>
 [image: Major]   T3-912 <http://dev.mygrid.org.uk/issues/browse/T3-912>

Drag components into and out of nested workflows
<http://dev.mygrid.org.uk/issues/browse/T3-912>
 [image: Major]   T3-913 <http://dev.mygrid.org.uk/issues/browse/T3-913>

Better indications of types and iteration in workflows
<http://dev.mygrid.org.uk/issues/browse/T3-913>
 [image: Major]   T3-916 <http://dev.mygrid.org.uk/issues/browse/T3-916>

Support symbols in input/output port labels
<http://dev.mygrid.org.uk/issues/browse/T3-916>
 [image: Major]   T3-917 <http://dev.mygrid.org.uk/issues/browse/T3-917>

Need to be able to manage component family and components
<http://dev.mygrid.org.uk/issues/browse/T3-917>
 [image: Major]   T3-918 <http://dev.mygrid.org.uk/issues/browse/T3-918>

Non-control grouping of nested workflows
<http://dev.mygrid.org.uk/issues/browse/T3-918>
 [image: Major]   T3-919 <http://dev.mygrid.org.uk/issues/browse/T3-919>

Implement component template <http://dev.mygrid.org.uk/issues/browse/T3-919>
 [image: Critical]   T3-920 <http://dev.mygrid.org.uk/issues/browse/T3-920>

RShell accept generic lists <http://dev.mygrid.org.uk/issues/browse/T3-920>
 [image: Major]   T3-921 <http://dev.mygrid.org.uk/issues/browse/T3-921>

Saving nested workflow does not save to disk
<http://dev.mygrid.org.uk/issues/browse/T3-921>
 [image: Major]   T3-922 <http://dev.mygrid.org.uk/issues/browse/T3-922>

Allow passing of large R data by reference
<http://dev.mygrid.org.uk/issues/browse/T3-922>
 [image: Major]   T3-924 <http://dev.mygrid.org.uk/issues/browse/T3-924>

Display progress when installing an update
<http://dev.mygrid.org.uk/issues/browse/T3-924>
 [image: Major]   T3-925 <http://dev.mygrid.org.uk/issues/browse/T3-925>

Which signature method does Oauth plugin use for oauth1 ?
<http://dev.mygrid.org.uk/issues/browse/T3-925>
 [image: Major]   T3-926 <http://dev.mygrid.org.uk/issues/browse/T3-926>

Interaction service does not fail when file decoding fails
<http://dev.mygrid.org.uk/issues/browse/T3-926>
 [image: Major]   T3-927 <http://dev.mygrid.org.uk/issues/browse/T3-927>

OK or Close button for credential manager dialog
<http://dev.mygrid.org.uk/issues/browse/T3-927>
 [image: Major]   T3-928 <http://dev.mygrid.org.uk/issues/browse/T3-928>

Interactions should be as small as possible
<http://dev.mygrid.org.uk/issues/browse/T3-928>
 [image: Major]   T3-930 <http://dev.mygrid.org.uk/issues/browse/T3-930>

ProvenanceLayer is execution specific
<http://dev.mygrid.org.uk/issues/browse/T3-930>
 [image: Blocker]   T3-952 <http://dev.mygrid.org.uk/issues/browse/T3-952>

Full profile validation <http://dev.mygrid.org.uk/issues/browse/T3-952>
 [image: Major]   T3-991 <http://dev.mygrid.org.uk/issues/browse/T3-991>

Taverna server fails to execute unauthenticated Rshell activity
<http://dev.mygrid.org.uk/issues/browse/T3-991>
 [image: Major]   T3-997 <http://dev.mygrid.org.uk/issues/browse/T3-997>

Off-by-one errors in diagram drawing
<http://dev.mygrid.org.uk/issues/browse/T3-997>
 [image: Minor]   T3-1001 <http://dev.mygrid.org.uk/issues/browse/T3-1001>

Services not handling/passing through empty lists correctly when iterating
<http://dev.mygrid.org.uk/issues/browse/T3-1001>
 [image: Critical]   T3-1003
<http://dev.mygrid.org.uk/issues/browse/T3-1003>

Uploading new workflow version resets sharing permission
<http://dev.mygrid.org.uk/issues/browse/T3-1003>
 [image: Major]   T3-1016 <http://dev.mygrid.org.uk/issues/browse/T3-1016>

Check for null rooted dialogs
<http://dev.mygrid.org.uk/issues/browse/T3-1016>
 [image: Major]   T3-1030 <http://dev.mygrid.org.uk/issues/browse/T3-1030>

Change default port for interaction
<http://dev.mygrid.org.uk/issues/browse/T3-1030>
 [image: Critical]   T3-1058
<http://dev.mygrid.org.uk/issues/browse/T3-1058>

WSDL, Soaplab, Rshell, Component and Interaction services do not appear as
selected when they are dragged to a diagram
<http://dev.mygrid.org.uk/issues/browse/T3-1058>
 [image: Critical]   T3-1060
<http://dev.mygrid.org.uk/issues/browse/T3-1060>

Why Expose Required Plugins to the USER
<http://dev.mygrid.org.uk/issues/browse/T3-1060>
 [image: Trivial]   T3-1062 <http://dev.mygrid.org.uk/issues/browse/T3-1062>

File recent workflows not jumping to open workflow
<http://dev.mygrid.org.uk/issues/browse/T3-1062>
 [image: Minor]   T3-1063 <http://dev.mygrid.org.uk/issues/browse/T3-1063>

Add Taverna type MyExperiment Group tab
<http://dev.mygrid.org.uk/issues/browse/T3-1063>
 [image: Minor]   T3-1067 <http://dev.mygrid.org.uk/issues/browse/T3-1067>

Extract the VOTable activity (based on stilts library) from the Astro
plugin and make it generic by not hard-coding the parameter to 'VOTable'
<http://dev.mygrid.org.uk/issues/browse/T3-1067>
 [image: Blocker]   T3-1071 <http://dev.mygrid.org.uk/issues/browse/T3-1071>

F1 click from Taverna to wiki not working
<http://dev.mygrid.org.uk/issues/browse/T3-1071>
 [image: Trivial]   T3-1083 <http://dev.mygrid.org.uk/issues/browse/T3-1083>

Splitter element splitting decision
<http://dev.mygrid.org.uk/issues/browse/T3-1083>
 [image: Major]   T3-1084 <http://dev.mygrid.org.uk/issues/browse/T3-1084>

Develop alternative proposal for component "coordinate system"
<http://dev.mygrid.org.uk/issues/browse/T3-1084>
 [image: Major]   T3-1096 <http://dev.mygrid.org.uk/issues/browse/T3-1096>

Not obvious how to upadate a component in a wf after the component has been
changed <http://dev.mygrid.org.uk/issues/browse/T3-1096>
 [image: Critical]   T3-1100
<http://dev.mygrid.org.uk/issues/browse/T3-1100>

Nested wf or a component witn input ports that are not connected to
anything hangs when run <http://dev.mygrid.org.uk/issues/browse/T3-1100>
 [image: Critical]   T3-1114
<http://dev.mygrid.org.uk/issues/browse/T3-1114>

SVG renderer is out of date <http://dev.mygrid.org.uk/issues/browse/T3-1114>
 [image: Major]   T3-1117 <http://dev.mygrid.org.uk/issues/browse/T3-1117>

Colours for interaction and component activities ahousl be registered with
ColourManager <http://dev.mygrid.org.uk/issues/browse/T3-1117>
 [image: Major]   T3-1119 <http://dev.mygrid.org.uk/issues/browse/T3-1119>

Ability to create a MULTIPART_FORM_DATA for a post
<http://dev.mygrid.org.uk/issues/browse/T3-1119>
 [image: Major]   T3-1127 <http://dev.mygrid.org.uk/issues/browse/T3-1127>

Importing a profile form a URL seems to be encoding URLs (which may already
be encoded) and then when it cannot find the resource it does not report
the error to the user but just logs it as a warning
<http://dev.mygrid.org.uk/issues/browse/T3-1127>
 [image: Critical]   T3-1141
<http://dev.mygrid.org.uk/issues/browse/T3-1141>

Update Data Viewer Tool <http://dev.mygrid.org.uk/issues/browse/T3-1141>
 [image: Major]   T3-1148 <http://dev.mygrid.org.uk/issues/browse/T3-1148>

Implement cleanup hook for |Workbench and CLT
<http://dev.mygrid.org.uk/issues/browse/T3-1148>
 [image: Major]   T3-1149 <http://dev.mygrid.org.uk/issues/browse/T3-1149>

Hooks for listening to running of a workflow
<http://dev.mygrid.org.uk/issues/browse/T3-1149>
 [image: Major]   T3-1154 <http://dev.mygrid.org.uk/issues/browse/T3-1154>

Cancel Rename Dialog on Escape key press
<http://dev.mygrid.org.uk/issues/browse/T3-1154>
 [image: Minor]   T3-1173 <http://dev.mygrid.org.uk/issues/browse/T3-1173>

Local world must go! <http://dev.mygrid.org.uk/issues/browse/T3-1173>
 [image: Critical]   T3-1175
<http://dev.mygrid.org.uk/issues/browse/T3-1175>

PDF renderer may have problems
<http://dev.mygrid.org.uk/issues/browse/T3-1175>
 [image: Major]   T3-1210 <http://dev.mygrid.org.uk/issues/browse/T3-1210>

WSDL parsing issue with missing <soap:fault> element
<http://dev.mygrid.org.uk/issues/browse/T3-1210>
 [image: Major]   T3-1211 <http://dev.mygrid.org.uk/issues/browse/T3-1211>

ClosedByInterruptException prevents deleting of workflow runs
<http://dev.mygrid.org.uk/issues/browse/T3-1211>
 [image: Minor]   T3-1215 <http://dev.mygrid.org.uk/issues/browse/T3-1215>

WSDL parser falls over if given Soap 1.2 binding
<http://dev.mygrid.org.uk/issues/browse/T3-1215>
 [image: Critical]   T3-1216
<http://dev.mygrid.org.uk/issues/browse/T3-1216>

MyExperiment not logged in not very clear
<http://dev.mygrid.org.uk/issues/browse/T3-1216>
 [image: Major]

On 25 November 2014 at 14:08, alaninmcr <al...@googlemail.com> wrote:

> On 25/11/2014 12:31, Christian Brenninkmeijer wrote:
>
>> At this point I strongly vote -1
>>
>> There is much too much Taverna 2 stuff in the current Taverna Jira.
>>
>> As Taverna 2 will never be an Apache product moving duplicating these
>> issue in Apache Jira is incorrect.
>>
>> At the very least the first step should be to go through the existing
>> issue to see how many we really want to move to Apache.
>>
>> Only then can we discuss the most suitable method for moving these.
>>
>
> I agree with Christian that we should go through the existing Jira and
> "prune" it.
>
> I suggest that:
>
> (a) Taverna 2-specific issues should be moved to the Taverna 2 project.
>
> (b) Taverna 3-specific issues remain in the Taverna 3 project.
>
> (c) Issues that are known to be common should be copied (debatable).
>
> (d) There are also issues where a "ghost" of the Taverna 2 issue will be
> in Taverna 3 as a 'check that ... does (not) happen'.
>
>  Christian
>>
>
> Alan
>



-- 
Stian Soiland-Reyes, myGrid team
School of Computer Science
The University of Manchester
http://soiland-reyes.com/stian/work/ http://orcid.org/0000-0001-9842-9718

Re: Moving Taverna Jira issues to issues.apache.org

Posted by alaninmcr <al...@googlemail.com>.
On 25/11/2014 14:08, alaninmcr wrote:
> On 25/11/2014 12:31, Christian Brenninkmeijer wrote:
>> At this point I strongly vote -1

So -1 from me as well

> Alan

Alan

Re: Moving Taverna Jira issues to issues.apache.org

Posted by alaninmcr <al...@googlemail.com>.
On 25/11/2014 12:31, Christian Brenninkmeijer wrote:
> At this point I strongly vote -1
>
> There is much too much Taverna 2 stuff in the current Taverna Jira.
>
> As Taverna 2 will never be an Apache product moving duplicating these
> issue in Apache Jira is incorrect.
>
> At the very least the first step should be to go through the existing
> issue to see how many we really want to move to Apache.
>
> Only then can we discuss the most suitable method for moving these.

I agree with Christian that we should go through the existing Jira and 
"prune" it.

I suggest that:

(a) Taverna 2-specific issues should be moved to the Taverna 2 project.

(b) Taverna 3-specific issues remain in the Taverna 3 project.

(c) Issues that are known to be common should be copied (debatable).

(d) There are also issues where a "ghost" of the Taverna 2 issue will be 
in Taverna 3 as a 'check that ... does (not) happen'.

> Christian

Alan

Re: Moving Taverna Jira issues to issues.apache.org

Posted by Christian Brenninkmeijer <br...@cs.man.ac.uk>.
At this point I strongly vote -1

There is much too much Taverna 2 stuff in the current Taverna Jira.

As Taverna 2 will never be an Apache product moving duplicating these 
issue in Apache Jira is incorrect.

At the very least the first step should be to go through the existing 
issue to see how many we really want to move to Apache.

Only then can we discuss the most suitable method for moving these.

Christian

On 25/11/2014 11:24, Stian Soiland-Reyes wrote:
> I talked to Gavin McDonald from apache.org INFRA at ApacheCon EU 2014.
>
> We discussed how Taverna can move:
>
> * git
> * wiki (Confluence)
> * issue tracker (Jira)
>
>
> Luckily the technology is on our side - we're already using Confluence
> and Jira at http://dev.mygrid.org.uk/ - however for the move a few
> things needs to be sorted:
>
> First is IP Clearance - the wiki and issues are arguably also a kind
> of intellectual property.
>
> Second is to prepare for moving of Jira issues. The documentation for this
>
>    https://confluence.atlassian.com/display/JIRA/Restoring+a+Project+from+Backup
>
> Basically we take a full backup to a ZIP file from the original (thus
> including attachments) - and then on import INFRA will select only the
> Taverna project(s).
>
>
> The page above says that the Jira versions need to match exactly. So
> the first step is for myGrid to upgrade
> http://dev.mygrid.org.uk/issues to match  https://issues.apache.org/jira/
>
> myGrid will also need to check if we are allowed to export the full
> backup outside the EU - even though they won't all be imported this
> touches on Data Protection Issues...   A workaround is to first do the
> import-single project on a secondary Jira issue in-house at myGrid.
>
>
> We have already said we need to prune the list of issues - but this is
> not important for the import procedure and can be done afterwards.
>
>
> Users in the old Jira who do not exist in the new one will be created
> on import, but won't be able to log in. Therefore the common thing
> INFRA does is to manually search-replace in the exported XML of the
> committer usernames that do not match.  myGrid will need to prepare a
> list of mygrid-to-apache Jira usernames.
>
>
> The myGrid Jira is not (anymore) open for public registration, so
> there won't be a bunch of "fresh" reporters that will be imported -
> however not everyone at myGrid has become a Taverna committer. Gavin
> suggested we can leave "Reporter" as is, but change "Assigned" after
> importing with a Jira Bulk Change .
>
>
> Jira projects - now we have several:
>
> http://dev.mygrid.org.uk/issues/browse/TAVSERV
> http://dev.mygrid.org.uk/issues/browse/SCUFL2
> http://dev.mygrid.org.uk/issues/browse/T3
>
> (Note that T3 has already got most of the relevant 2.x issues from
> http://dev.mygrid.org.uk/issues/browse/T2 )
>
>
> Gavin says we can't change the key of Jira (the project-bit of the
> URIs and part of the bug number) after importing, but can change the
> name of the project in the listing. It is possible to have groupings -
> see for instance ActiveMQ in
> https://issues.apache.org/jira/secure/BrowseProjects.jspa#all
>
>
> It is possible to move issues from one project to another to change
> the key, but this might not preserve the issue number, e.g. T3-123
> might become TAV-82.
>
> In the XML it is possible to search-replace the project key.
>
>
>
> I assume we don't want to import them with the current names, as it
> will be odd to have 'TAVSERV', 'T3' and 'SCUFL2' in Apache - we should
> at least have a common prefix.
>
> Perhaps TAVSERV and TAV?
>
> Or should there be one project per git repositories? I am not so keen
> on this as often an issue will touch upon multiple parts - this is
> true even for the Server that might need a related fix in the command
> line.
>
> Or one project per product?  (e.g. TAVENGINE, TAVCMD, TAVWBENCH,
> TAVSERVER)? This might make more sense. ((Note that _ and - are not
> valid in the key name.. one project used a lower-case "x", like
> "TAVxENGINE" ! ))
>
> Or we can just have a single, merged TAV project, and just use
> Components and Versions as earlier mentipned? This means we can't as
> easily to HTTP redirects from the old wiki (perhaps only from T3).
>
>
> I think I will need your views on these choices..  Could you do your
> +1/0/-1 above?
>
>