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Posted to commits@airavata.apache.org by sc...@apache.org on 2015/08/24 21:28:57 UTC
[19/32] airavata-sandbox git commit: adding datacat system
http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gscfa/GSCFaLexer.java
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diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gscfa/GSCFaLexer.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gscfa/GSCFaLexer.java
new file mode 100644
index 0000000..02a4ced
--- /dev/null
+++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gscfa/GSCFaLexer.java
@@ -0,0 +1,790 @@
+/*
+*
+* Licensed to the Apache Software Foundation (ASF) under one
+* or more contributor license agreements. See the NOTICE file
+* distributed with this work for additional information
+* regarding copyright ownership. The ASF licenses this file
+* to you under the Apache License, Version 2.0 (the
+* "License"); you may not use this file except in compliance
+* with the License. You may obtain a copy of the License at
+*
+* http://www.apache.org/licenses/LICENSE-2.0
+*
+* Unless required by applicable law or agreed to in writing,
+* software distributed under the License is distributed on an
+* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+* KIND, either express or implied. See the License for the
+* specific language governing permissions and limitations
+* under the License.
+*
+*/
+package org.apache.airavata.datacat.parsers.gridchem.gscfa;/* The following code was generated by JFlex 1.4.3 on 9/11/14 6:08 PM */
+
+import java_cup.runtime.Symbol;
+import org.apache.airavata.datacat.parsers.gridchem.Settings;
+
+
+/**
+ * This class is a scanner generated by
+ * <a href="http://www.jflex.de/">JFlex</a> 1.4.3
+ * on 9/11/14 6:08 PM from the specification file
+ * <tt>gscfa.flex</tt>
+ */
+public class GSCFaLexer implements java_cup.runtime.Scanner {
+
+ /** This character denotes the end of file */
+ public static final int YYEOF = -1;
+
+ /** initial size of the lookahead buffer */
+ private static final int ZZ_BUFFERSIZE = 16384;
+
+ /** lexical states */
+ public static final int ITER2 = 6;
+ public static final int DASH = 10;
+ public static final int INTVALUE = 12;
+ public static final int SCF1 = 2;
+ public static final int IGNOREALL = 24;
+ public static final int ITER = 4;
+ public static final int YYINITIAL = 0;
+ public static final int ITER7 = 22;
+ public static final int ITER6 = 20;
+ public static final int ITER5 = 18;
+ public static final int FLOATVALUE = 14;
+ public static final int ITER4 = 16;
+ public static final int ITER3 = 8;
+
+ /**
+ * ZZ_LEXSTATE[l] is the state in the DFA for the lexical state l
+ * ZZ_LEXSTATE[l+1] is the state in the DFA for the lexical state l
+ * at the beginning of a line
+ * l is of the form l = 2*k, k a non negative integer
+ */
+ private static final int ZZ_LEXSTATE[] = {
+ 0, 0, 1, 1, 2, 2, 3, 3, 4, 4, 5, 5, 1, 1, 6, 6,
+ 7, 7, 8, 8, 9, 9, 10, 10, 1, 1
+ };
+
+ /**
+ * Translates characters to character classes
+ */
+ private static final char [] ZZ_CMAP = {
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 9, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 0, 23, 4, 0,
+ 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0,
+ 0, 14, 22, 19, 11, 7, 0, 17, 20, 5, 0, 0, 15, 12, 16, 13,
+ 0, 0, 8, 21, 6, 0, 24, 0, 10, 18, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0
+ };
+
+ /**
+ * Translates DFA states to action switch labels.
+ */
+ private static final int [] ZZ_ACTION = zzUnpackAction();
+
+ private static final String ZZ_ACTION_PACKED_0 =
+ "\13\0\2\1\2\2\1\1\2\3\2\4\1\1\3\5"+
+ "\10\1\3\0\1\6\15\0\1\7\1\10\1\11\1\12"+
+ "\65\0\1\13\1\14\1\15\77\0\1\16\1\17";
+
+ private static int [] zzUnpackAction() {
+ int [] result = new int[174];
+ int offset = 0;
+ offset = zzUnpackAction(ZZ_ACTION_PACKED_0, offset, result);
+ return result;
+ }
+
+ private static int zzUnpackAction(String packed, int offset, int [] result) {
+ int i = 0; /* index in packed string */
+ int j = offset; /* index in unpacked array */
+ int l = packed.length();
+ while (i < l) {
+ int count = packed.charAt(i++);
+ int value = packed.charAt(i++);
+ do result[j++] = value; while (--count > 0);
+ }
+ return j;
+ }
+
+
+ /**
+ * Translates a state to a row index in the transition table
+ */
+ private static final int [] ZZ_ROWMAP = zzUnpackRowMap();
+
+ private static final String ZZ_ROWMAP_PACKED_0 =
+ "\0\0\0\31\0\62\0\113\0\144\0\175\0\226\0\257"+
+ "\0\310\0\341\0\372\0\u0113\0\u012c\0\u0113\0\u0145\0\u015e"+
+ "\0\u0113\0\u0177\0\u0113\0\u0190\0\u01a9\0\u0113\0\u01c2\0\u01db"+
+ "\0\u01f4\0\u020d\0\u0226\0\u023f\0\u0258\0\u0271\0\u028a\0\u02a3"+
+ "\0\u02bc\0\u02d5\0\u02ee\0\u01c2\0\u0307\0\u01f4\0\u0320\0\u0226"+
+ "\0\u0339\0\u0258\0\u0352\0\u028a\0\u036b\0\u0384\0\u039d\0\u03b6"+
+ "\0\u03cf\0\u0320\0\u0339\0\u0352\0\u036b\0\u03e8\0\u0401\0\u041a"+
+ "\0\u0433\0\u044c\0\u0465\0\u047e\0\u0497\0\u04b0\0\u04c9\0\u04e2"+
+ "\0\u04fb\0\u0514\0\u052d\0\u0546\0\u055f\0\u0578\0\u0591\0\u05aa"+
+ "\0\u05c3\0\u05dc\0\u05f5\0\u060e\0\u0627\0\u0640\0\u0659\0\u0672"+
+ "\0\u068b\0\u06a4\0\u06bd\0\u06d6\0\u06ef\0\u0708\0\u0721\0\u073a"+
+ "\0\u0753\0\u076c\0\u0785\0\u079e\0\u07b7\0\u07d0\0\u07e9\0\u0802"+
+ "\0\u081b\0\u0834\0\u084d\0\u0866\0\u087f\0\u0898\0\u08b1\0\u08ca"+
+ "\0\u08e3\0\u08fc\0\u0113\0\u0113\0\u0113\0\u0915\0\u092e\0\u0947"+
+ "\0\u0960\0\u0979\0\u0992\0\u09ab\0\u09c4\0\u09dd\0\u09f6\0\u0a0f"+
+ "\0\u0a28\0\u0a41\0\u0a5a\0\u0a73\0\u0a8c\0\u0aa5\0\u0abe\0\u0ad7"+
+ "\0\u0af0\0\u0b09\0\u0b22\0\u0b3b\0\u0b54\0\u0b6d\0\u0b86\0\u0b9f"+
+ "\0\u0bb8\0\u0bd1\0\u0bea\0\u0c03\0\u0c1c\0\u0c35\0\u0c4e\0\u0c67"+
+ "\0\u0c80\0\u0c99\0\u0cb2\0\u0ccb\0\u0ce4\0\u0cfd\0\u0d16\0\u0d2f"+
+ "\0\u0d48\0\u0d61\0\u0d7a\0\u0d93\0\u0dac\0\u0dc5\0\u0dde\0\u0df7"+
+ "\0\u0e10\0\u0e29\0\u0e42\0\u0e5b\0\u0e74\0\u0e8d\0\u0ea6\0\u0ebf"+
+ "\0\u0ed8\0\u0ef1\0\u0f0a\0\u0f23\0\u0113\0\u0113";
+
+ private static int [] zzUnpackRowMap() {
+ int [] result = new int[174];
+ int offset = 0;
+ offset = zzUnpackRowMap(ZZ_ROWMAP_PACKED_0, offset, result);
+ return result;
+ }
+
+ private static int zzUnpackRowMap(String packed, int offset, int [] result) {
+ int i = 0; /* index in packed string */
+ int j = offset; /* index in unpacked array */
+ int l = packed.length();
+ while (i < l) {
+ int high = packed.charAt(i++) << 16;
+ result[j++] = high | packed.charAt(i++);
+ }
+ return j;
+ }
+
+ /**
+ * The transition table of the DFA
+ */
+ private static final int [] ZZ_TRANS = zzUnpackTrans();
+
+ private static final String ZZ_TRANS_PACKED_0 =
+ "\5\14\1\15\55\14\1\16\1\17\24\14\1\20\2\14"+
+ "\1\21\1\22\27\14\1\23\1\24\41\14\1\25\15\14"+
+ "\1\26\3\27\23\26\1\30\1\26\1\14\2\31\1\32"+
+ "\23\14\1\32\2\14\2\33\1\34\23\14\1\34\2\14"+
+ "\2\35\1\36\23\14\1\36\2\14\2\37\1\40\23\14"+
+ "\1\40\1\14\37\0\1\41\23\0\2\17\55\0\1\42"+
+ "\2\0\2\22\27\0\2\24\35\0\1\43\22\0\2\44"+
+ "\27\0\2\44\24\0\1\45\2\0\2\46\1\0\1\47"+
+ "\25\0\2\46\27\0\2\50\1\0\1\51\25\0\2\50"+
+ "\27\0\2\52\1\0\1\53\25\0\2\52\27\0\2\54"+
+ "\1\0\1\55\25\0\2\54\35\0\1\56\50\0\1\57"+
+ "\21\0\1\60\37\0\1\61\2\0\2\62\27\0\2\63"+
+ "\27\0\2\64\27\0\2\65\36\0\1\66\47\0\1\67"+
+ "\26\0\1\70\32\0\1\71\12\0\1\72\46\0\1\73"+
+ "\6\0\1\74\52\0\1\75\10\0\1\76\50\0\1\77"+
+ "\7\0\1\100\51\0\1\101\13\0\1\102\45\0\1\103"+
+ "\23\0\1\104\35\0\1\105\12\0\1\106\46\0\1\107"+
+ "\12\0\1\110\46\0\1\111\14\0\1\112\44\0\1\113"+
+ "\24\0\1\114\34\0\1\115\10\0\1\116\50\0\1\117"+
+ "\16\0\1\120\42\0\1\121\15\0\1\122\43\0\1\123"+
+ "\21\0\1\124\37\0\1\125\12\0\1\126\46\0\1\127"+
+ "\31\0\1\130\27\0\1\131\12\0\1\132\46\0\1\133"+
+ "\10\0\1\134\50\0\1\135\12\0\1\136\46\0\1\137"+
+ "\11\0\1\140\47\0\1\141\12\0\1\142\46\0\1\143"+
+ "\22\0\1\144\36\0\1\145\7\0\1\146\51\0\1\147"+
+ "\10\0\1\150\50\0\1\151\16\0\1\152\42\0\1\153"+
+ "\14\0\1\154\44\0\1\155\7\0\1\156\40\0\1\157"+
+ "\31\0\1\160\22\0\1\161\26\0\1\162\41\0\1\163"+
+ "\17\0\1\164\31\0\1\165\41\0\1\166\31\0\1\167"+
+ "\17\0\1\170\30\0\1\171\30\0\1\172\30\0\1\173"+
+ "\30\0\1\174\30\0\1\175\30\0\1\176\26\0\1\177"+
+ "\32\0\1\200\42\0\1\201\31\0\1\202\22\0\1\203"+
+ "\32\0\1\204\31\0\1\205\16\0\1\206\32\0\1\207"+
+ "\30\0\1\210\32\0\1\211\24\0\1\212\41\0\1\213"+
+ "\35\0\1\214\10\0\1\215\31\0\1\216\44\0\1\217"+
+ "\17\0\1\220\42\0\1\221\31\0\1\222\22\0\1\223"+
+ "\32\0\1\224\31\0\1\225\16\0\1\226\32\0\1\227"+
+ "\30\0\1\230\30\0\1\231\30\0\1\232\30\0\1\233"+
+ "\1\0\1\234\32\0\1\235\20\0\1\236\33\0\1\237"+
+ "\25\0\1\240\51\0\1\241\27\0\1\242\7\0\1\243"+
+ "\35\0\1\244\30\0\1\245\26\0\1\246\42\0\1\247"+
+ "\17\0\1\250\30\0\1\251\30\0\1\252\36\0\1\253"+
+ "\27\0\1\254\26\0\1\255\25\0\1\256\20\0";
+
+ private static int [] zzUnpackTrans() {
+ int [] result = new int[3900];
+ int offset = 0;
+ offset = zzUnpackTrans(ZZ_TRANS_PACKED_0, offset, result);
+ return result;
+ }
+
+ private static int zzUnpackTrans(String packed, int offset, int [] result) {
+ int i = 0; /* index in packed string */
+ int j = offset; /* index in unpacked array */
+ int l = packed.length();
+ while (i < l) {
+ int count = packed.charAt(i++);
+ int value = packed.charAt(i++);
+ value--;
+ do result[j++] = value; while (--count > 0);
+ }
+ return j;
+ }
+
+
+ /* error codes */
+ private static final int ZZ_UNKNOWN_ERROR = 0;
+ private static final int ZZ_NO_MATCH = 1;
+ private static final int ZZ_PUSHBACK_2BIG = 2;
+
+ /* error messages for the codes above */
+ private static final String ZZ_ERROR_MSG[] = {
+ "Unkown internal scanner error",
+ "Error: could not match input",
+ "Error: pushback value was too large"
+ };
+
+ /**
+ * ZZ_ATTRIBUTE[aState] contains the attributes of state <code>aState</code>
+ */
+ private static final int [] ZZ_ATTRIBUTE = zzUnpackAttribute();
+
+ private static final String ZZ_ATTRIBUTE_PACKED_0 =
+ "\13\0\1\11\1\1\1\11\2\1\1\11\1\1\1\11"+
+ "\2\1\1\11\12\1\3\0\1\1\15\0\4\1\65\0"+
+ "\3\11\77\0\2\11";
+
+ private static int [] zzUnpackAttribute() {
+ int [] result = new int[174];
+ int offset = 0;
+ offset = zzUnpackAttribute(ZZ_ATTRIBUTE_PACKED_0, offset, result);
+ return result;
+ }
+
+ private static int zzUnpackAttribute(String packed, int offset, int [] result) {
+ int i = 0; /* index in packed string */
+ int j = offset; /* index in unpacked array */
+ int l = packed.length();
+ while (i < l) {
+ int count = packed.charAt(i++);
+ int value = packed.charAt(i++);
+ do result[j++] = value; while (--count > 0);
+ }
+ return j;
+ }
+
+ /** the input device */
+ private java.io.Reader zzReader;
+
+ /** the current state of the DFA */
+ private int zzState;
+
+ /** the current lexical state */
+ private int zzLexicalState = YYINITIAL;
+
+ /** this buffer contains the current text to be matched and is
+ the source of the yytext() string */
+ private char zzBuffer[] = new char[ZZ_BUFFERSIZE];
+
+ /** the textposition at the last accepting state */
+ private int zzMarkedPos;
+
+ /** the current text position in the buffer */
+ private int zzCurrentPos;
+
+ /** startRead marks the beginning of the yytext() string in the buffer */
+ private int zzStartRead;
+
+ /** endRead marks the last character in the buffer, that has been read
+ from input */
+ private int zzEndRead;
+
+ /** number of newlines encountered up to the start of the matched text */
+ private int yyline;
+
+ /** the number of characters up to the start of the matched text */
+ private int yychar;
+
+ /**
+ * the number of characters from the last newline up to the start of the
+ * matched text
+ */
+ private int yycolumn;
+
+ /**
+ * zzAtBOL == true <=> the scanner is currently at the beginning of a line
+ */
+ private boolean zzAtBOL = true;
+
+ /** zzAtEOF == true <=> the scanner is at the EOF */
+ private boolean zzAtEOF;
+
+ /** denotes if the user-EOF-code has already been executed */
+ private boolean zzEOFDone;
+
+ /* user code: */
+ public static boolean DEBUG = false;
+
+
+ /**
+ * Creates a new scanner
+ * There is also a java.io.InputStream version of this constructor.
+ *
+ * @param in the java.io.Reader to read input from.
+ */
+ public GSCFaLexer(java.io.Reader in) {
+ this.zzReader = in;
+ }
+
+ /**
+ * Creates a new scanner.
+ * There is also java.io.Reader version of this constructor.
+ *
+ * @param in the java.io.Inputstream to read input from.
+ */
+ public GSCFaLexer(java.io.InputStream in) {
+ this(new java.io.InputStreamReader(in));
+ }
+
+
+ /**
+ * Refills the input buffer.
+ *
+ * @return <code>false</code>, iff there was new input.
+ *
+ * @exception java.io.IOException if any I/O-Error occurs
+ */
+ private boolean zzRefill() throws java.io.IOException {
+
+ /* first: make room (if you can) */
+ if (zzStartRead > 0) {
+ System.arraycopy(zzBuffer, zzStartRead,
+ zzBuffer, 0,
+ zzEndRead-zzStartRead);
+
+ /* translate stored positions */
+ zzEndRead-= zzStartRead;
+ zzCurrentPos-= zzStartRead;
+ zzMarkedPos-= zzStartRead;
+ zzStartRead = 0;
+ }
+
+ /* is the buffer big enough? */
+ if (zzCurrentPos >= zzBuffer.length) {
+ /* if not: blow it up */
+ char newBuffer[] = new char[zzCurrentPos*2];
+ System.arraycopy(zzBuffer, 0, newBuffer, 0, zzBuffer.length);
+ zzBuffer = newBuffer;
+ }
+
+ /* finally: fill the buffer with new input */
+ int numRead = zzReader.read(zzBuffer, zzEndRead,
+ zzBuffer.length-zzEndRead);
+
+ if (numRead > 0) {
+ zzEndRead+= numRead;
+ return false;
+ }
+ // unlikely but not impossible: read 0 characters, but not at end of stream
+ if (numRead == 0) {
+ int c = zzReader.read();
+ if (c == -1) {
+ return true;
+ } else {
+ zzBuffer[zzEndRead++] = (char) c;
+ return false;
+ }
+ }
+
+ // numRead < 0
+ return true;
+ }
+
+
+ /**
+ * Closes the input stream.
+ */
+ public final void yyclose() throws java.io.IOException {
+ zzAtEOF = true; /* indicate end of file */
+ zzEndRead = zzStartRead; /* invalidate buffer */
+
+ if (zzReader != null)
+ zzReader.close();
+ }
+
+
+ /**
+ * Resets the scanner to read from a new input stream.
+ * Does not close the old reader.
+ *
+ * All internal variables are reset, the old input stream
+ * <b>cannot</b> be reused (internal buffer is discarded and lost).
+ * Lexical state is set to <tt>ZZ_INITIAL</tt>.
+ *
+ * @param reader the new input stream
+ */
+ public final void yyreset(java.io.Reader reader) {
+ zzReader = reader;
+ zzAtBOL = true;
+ zzAtEOF = false;
+ zzEOFDone = false;
+ zzEndRead = zzStartRead = 0;
+ zzCurrentPos = zzMarkedPos = 0;
+ yyline = yychar = yycolumn = 0;
+ zzLexicalState = YYINITIAL;
+ }
+
+
+ /**
+ * Returns the current lexical state.
+ */
+ public final int yystate() {
+ return zzLexicalState;
+ }
+
+
+ /**
+ * Enters a new lexical state
+ *
+ * @param newState the new lexical state
+ */
+ public final void yybegin(int newState) {
+ zzLexicalState = newState;
+ }
+
+
+ /**
+ * Returns the text matched by the current regular expression.
+ */
+ public final String yytext() {
+ return new String( zzBuffer, zzStartRead, zzMarkedPos-zzStartRead );
+ }
+
+
+ /**
+ * Returns the character at position <tt>pos</tt> from the
+ * matched text.
+ *
+ * It is equivalent to yytext().charAt(pos), but faster
+ *
+ * @param pos the position of the character to fetch.
+ * A value from 0 to yylength()-1.
+ *
+ * @return the character at position pos
+ */
+ public final char yycharat(int pos) {
+ return zzBuffer[zzStartRead+pos];
+ }
+
+
+ /**
+ * Returns the length of the matched text region.
+ */
+ public final int yylength() {
+ return zzMarkedPos-zzStartRead;
+ }
+
+
+ /**
+ * Reports an error that occured while scanning.
+ *
+ * In a wellformed scanner (no or only correct usage of
+ * yypushback(int) and a match-all fallback rule) this method
+ * will only be called with things that "Can't Possibly Happen".
+ * If this method is called, something is seriously wrong
+ * (e.g. a JFlex bug producing a faulty scanner etc.).
+ *
+ * Usual syntax/scanner level error handling should be done
+ * in error fallback rules.
+ *
+ * @param errorCode the code of the errormessage to display
+ */
+ private void zzScanError(int errorCode) {
+ String message;
+ try {
+ message = ZZ_ERROR_MSG[errorCode];
+ }
+ catch (ArrayIndexOutOfBoundsException e) {
+ message = ZZ_ERROR_MSG[ZZ_UNKNOWN_ERROR];
+ }
+
+ throw new Error(message);
+ }
+
+
+ /**
+ * Pushes the specified amount of characters back into the input stream.
+ *
+ * They will be read again by then next call of the scanning method
+ *
+ * @param number the number of characters to be read again.
+ * This number must not be greater than yylength()!
+ */
+ public void yypushback(int number) {
+ if ( number > yylength() )
+ zzScanError(ZZ_PUSHBACK_2BIG);
+
+ zzMarkedPos -= number;
+ }
+
+
+ /**
+ * Contains user EOF-code, which will be executed exactly once,
+ * when the end of file is reached
+ */
+ private void zzDoEOF() throws java.io.IOException {
+ if (!zzEOFDone) {
+ zzEOFDone = true;
+ yyclose();
+ }
+ }
+
+
+ /**
+ * Resumes scanning until the next regular expression is matched,
+ * the end of input is encountered or an I/O-Error occurs.
+ *
+ * @return the next token
+ * @exception java.io.IOException if any I/O-Error occurs
+ */
+ public java_cup.runtime.Symbol next_token() throws java.io.IOException {
+ int zzInput;
+ int zzAction;
+
+ // cached fields:
+ int zzCurrentPosL;
+ int zzMarkedPosL;
+ int zzEndReadL = zzEndRead;
+ char [] zzBufferL = zzBuffer;
+ char [] zzCMapL = ZZ_CMAP;
+
+ int [] zzTransL = ZZ_TRANS;
+ int [] zzRowMapL = ZZ_ROWMAP;
+ int [] zzAttrL = ZZ_ATTRIBUTE;
+
+ while (true) {
+ zzMarkedPosL = zzMarkedPos;
+
+ zzAction = -1;
+
+ zzCurrentPosL = zzCurrentPos = zzStartRead = zzMarkedPosL;
+
+ zzState = ZZ_LEXSTATE[zzLexicalState];
+
+
+ zzForAction: {
+ while (true) {
+
+ if (zzCurrentPosL < zzEndReadL)
+ zzInput = zzBufferL[zzCurrentPosL++];
+ else if (zzAtEOF) {
+ zzInput = YYEOF;
+ break zzForAction;
+ }
+ else {
+ // store back cached positions
+ zzCurrentPos = zzCurrentPosL;
+ zzMarkedPos = zzMarkedPosL;
+ boolean eof = zzRefill();
+ // get translated positions and possibly new buffer
+ zzCurrentPosL = zzCurrentPos;
+ zzMarkedPosL = zzMarkedPos;
+ zzBufferL = zzBuffer;
+ zzEndReadL = zzEndRead;
+ if (eof) {
+ zzInput = YYEOF;
+ break zzForAction;
+ }
+ else {
+ zzInput = zzBufferL[zzCurrentPosL++];
+ }
+ }
+ int zzNext = zzTransL[ zzRowMapL[zzState] + zzCMapL[zzInput] ];
+ if (zzNext == -1) break zzForAction;
+ zzState = zzNext;
+
+ int zzAttributes = zzAttrL[zzState];
+ if ( (zzAttributes & 1) == 1 ) {
+ zzAction = zzState;
+ zzMarkedPosL = zzCurrentPosL;
+ if ( (zzAttributes & 8) == 8 ) break zzForAction;
+ }
+
+ }
+ }
+
+ // store back cached position
+ zzMarkedPos = zzMarkedPosL;
+
+ switch (zzAction < 0 ? zzAction : ZZ_ACTION[zzAction]) {
+ case 11:
+ { if (Settings.DEBUG) System.out.println("GSCFaFlex: Found the dash");
+ yybegin(DASH);
+ }
+ case 16: break;
+ case 13:
+ { yybegin(DASH);
+ }
+ case 17: break;
+ case 4:
+ { if (Settings.DEBUG) System.out.println("GSCFaFlex: Found the third integer in the iteration");
+ if (Settings.DEBUG) System.out.println(yytext());
+ yybegin(ITER4);
+ return new Symbol(GSCFaSym.INT2, new Integer(yytext()));
+ }
+ case 18: break;
+ case 3:
+ { if (Settings.DEBUG) System.out.println("GSCFaFlex: Found the second integer in the iteration");
+ if (Settings.DEBUG) System.out.println(yytext());
+ yybegin(ITER3);
+ return new Symbol(GSCFaSym.INT1, new Integer(yytext()));
+ }
+ case 19: break;
+ case 14:
+ { if (Settings.DEBUG) System.out.println("GSCFaFlex: Found ITER EX DEM etc");
+ yybegin(ITER);
+ return new Symbol(GSCFaSym.FOUNDITER);
+ }
+ case 20: break;
+ case 2:
+ { if (Settings.DEBUG) System.out.println("GSCFaFlex: Found the first integer in the iteration");
+ if (Settings.DEBUG) System.out.println(yytext());
+ yybegin(ITER2);
+ return new Symbol(GSCFaSym.INTCycle, new Integer(yytext()));
+ }
+ case 21: break;
+ case 9:
+ { if (Settings.DEBUG) System.out.println("GSCFaFlex: Found float2");
+ yybegin (ITER7);
+ return new Symbol(GSCFaSym.FLOAT2);
+ }
+ case 22: break;
+ case 7:
+ { if (Settings.DEBUG) System.out.println("GSCFaFlex: Found the energy");
+ if (Settings.DEBUG) System.out.println(yytext());
+ yybegin(ITER5);
+ return new Symbol(GSCFaSym.ENERGY, new Float(yytext()));
+ }
+ case 23: break;
+ case 5:
+ { if (Settings.DEBUG) System.out.println("GSCFaFlex: Found new line");
+ }
+ case 24: break;
+ case 12:
+ { yybegin(IGNOREALL);
+ return new Symbol(GSCFaSym.SCFDONE);
+ }
+ case 25: break;
+ case 8:
+ { if (Settings.DEBUG) System.out.println("GSCFaFlex: ITER5");
+ if (Settings.DEBUG) System.out.println("GSCFaFlex: Found float1");
+ yybegin (ITER6);
+ return new Symbol(GSCFaSym.FLOAT1);
+ }
+ case 26: break;
+ case 6:
+ { if (Settings.DEBUG) System.out.println("GSCFaFlex: Found float value");
+ yybegin(ITER);
+ }
+ case 27: break;
+ case 15:
+ { if (Settings.DEBUG) System.out.println("GSCFaFlex: Found ITER EX DEM etc");
+ yybegin(ITER);
+ return new Symbol(GSCFaSym.FOUNDITER);
+ }
+ case 28: break;
+ case 10:
+ { if (Settings.DEBUG) System.out.println("GSCFaFlex: Found float3");
+ yybegin(ITER);
+ return new Symbol(GSCFaSym.FLOAT3);
+ }
+ case 29: break;
+ case 1:
+ {
+ }
+ case 30: break;
+ default:
+ if (zzInput == YYEOF && zzStartRead == zzCurrentPos) {
+ zzAtEOF = true;
+ zzDoEOF();
+ { return new java_cup.runtime.Symbol(GSCFaSym.EOF); }
+ }
+ else {
+ zzScanError(ZZ_NO_MATCH);
+ }
+ }
+ }
+ }
+
+ /**
+ * Converts an int token code into the name of the
+ * token by reflection on the cup symbol class/interface sym
+ *
+ * This code was contributed by Karl Meissner <me...@yahoo.com>
+ */
+ private String getTokenName(int token) {
+ try {
+ java.lang.reflect.Field [] classFields = GSCFaSym.class.getFields();
+ for (int i = 0; i < classFields.length; i++) {
+ if (classFields[i].getInt(null) == token) {
+ return classFields[i].getName();
+ }
+ }
+ } catch (Exception e) {
+ e.printStackTrace(System.err);
+ }
+
+ return "UNKNOWN TOKEN";
+ }
+
+ /**
+ * Same as next_token but also prints the token to standard out
+ * for debugging.
+ *
+ * This code was contributed by Karl Meissner <me...@yahoo.com>
+ */
+ public java_cup.runtime.Symbol debug_next_token() throws java.io.IOException {
+ java_cup.runtime.Symbol s = next_token();
+ System.out.println( " --"+ yytext() + "--" + getTokenName(s.sym) + "--");
+ return s;
+ }
+
+ /**
+ * Runs the scanner on input files.
+ *
+ * This is a standalone scanner, it will print any unmatched
+ * text to System.out unchanged.
+ *
+ * @param argv the command line, contains the filenames to run
+ * the scanner on.
+ */
+ public static void main(String argv[]) {
+ if (argv.length == 0) {
+ System.out.println("Usage : java GSCFaLexer <inputfile>");
+ }
+ else {
+ for (int i = 0; i < argv.length; i++) {
+ GSCFaLexer scanner = null;
+ try {
+ scanner = new GSCFaLexer( new java.io.FileReader(argv[i]) );
+ while ( !scanner.zzAtEOF ) scanner.next_token();
+ }
+ catch (java.io.FileNotFoundException e) {
+ System.out.println("File not found : \""+argv[i]+"\"");
+ }
+ catch (java.io.IOException e) {
+ System.out.println("IO error scanning file \""+argv[i]+"\"");
+ System.out.println(e);
+ }
+ catch (Exception e) {
+ System.out.println("Unexpected exception:");
+ e.printStackTrace();
+ }
+ }
+ }
+ }
+
+
+}
http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gscfa/GSCFaSym.java
----------------------------------------------------------------------
diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gscfa/GSCFaSym.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gscfa/GSCFaSym.java
new file mode 100644
index 0000000..9ae3a32
--- /dev/null
+++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gscfa/GSCFaSym.java
@@ -0,0 +1,44 @@
+/*
+*
+* Licensed to the Apache Software Foundation (ASF) under one
+* or more contributor license agreements. See the NOTICE file
+* distributed with this work for additional information
+* regarding copyright ownership. The ASF licenses this file
+* to you under the Apache License, Version 2.0 (the
+* "License"); you may not use this file except in compliance
+* with the License. You may obtain a copy of the License at
+*
+* http://www.apache.org/licenses/LICENSE-2.0
+*
+* Unless required by applicable law or agreed to in writing,
+* software distributed under the License is distributed on an
+* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+* KIND, either express or implied. See the License for the
+* specific language governing permissions and limitations
+* under the License.
+*
+*/
+package org.apache.airavata.datacat.parsers.gridchem.gscfa;
+//----------------------------------------------------
+// The following code was generated by CUP v0.10k
+// Thu Sep 11 18:08:50 IST 2014
+//----------------------------------------------------
+
+/** CUP generated class containing symbol constants. */
+public class GSCFaSym {
+ /* terminals */
+ public static final int INTCycle = 7;
+ public static final int ENERGY = 12;
+ public static final int EOF = 0;
+ public static final int INT3 = 6;
+ public static final int INT2 = 5;
+ public static final int INT1 = 4;
+ public static final int error = 1;
+ public static final int FLOAT3 = 11;
+ public static final int FLOAT2 = 10;
+ public static final int SCFDONE = 3;
+ public static final int FLOAT1 = 9;
+ public static final int FOUNDITER = 2;
+ public static final int FLOAT = 8;
+}
+
http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gscfa/GscfaParser.java
----------------------------------------------------------------------
diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gscfa/GscfaParser.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gscfa/GscfaParser.java
new file mode 100644
index 0000000..900a0cd
--- /dev/null
+++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gscfa/GscfaParser.java
@@ -0,0 +1,336 @@
+/*
+*
+* Licensed to the Apache Software Foundation (ASF) under one
+* or more contributor license agreements. See the NOTICE file
+* distributed with this work for additional information
+* regarding copyright ownership. The ASF licenses this file
+* to you under the Apache License, Version 2.0 (the
+* "License"); you may not use this file except in compliance
+* with the License. You may obtain a copy of the License at
+*
+* http://www.apache.org/licenses/LICENSE-2.0
+*
+* Unless required by applicable law or agreed to in writing,
+* software distributed under the License is distributed on an
+* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+* KIND, either express or implied. See the License for the
+* specific language governing permissions and limitations
+* under the License.
+*
+*/
+package org.apache.airavata.datacat.parsers.gridchem.gscfa;
+
+
+import java_cup.runtime.lr_parser;
+import org.apache.airavata.datacat.parsers.gridchem.GridChemQueueParser;
+
+import javax.swing.*;
+import java.io.FileReader;
+import java.util.ArrayList;
+import java.util.HashMap;
+
+public class GscfaParser extends java_cup.runtime.lr_parser implements GridChemQueueParser{
+
+ /** Default constructor. */
+ public GscfaParser() {super();}
+
+ /** Constructor which sets the default scanner. */
+ public GscfaParser(java_cup.runtime.Scanner s) {super(s);}
+
+ /**
+ * Constructor which uses a file reader.
+ */
+ public GscfaParser(final FileReader fileReader) {
+ super(new GSCFaLexer(fileReader));
+ }
+
+
+ /** Production table. */
+ protected static final short _production_table[][] =
+ lr_parser.unpackFromStrings(new String[]{
+ "\000\010\000\002\003\005\000\002\002\004\000\002\004" +
+ "\003\000\002\005\004\000\002\005\003\000\002\010\002" +
+ "\000\002\006\012\000\002\007\003"});
+
+ /** Access to production table. */
+ public short[][] production_table() {return _production_table;}
+
+ /** Parse-action table. */
+ protected static final short[][] _action_table =
+ lr_parser.unpackFromStrings(new String[]{
+ "\000\022\000\004\004\005\001\002\000\004\011\012\001" +
+ "\002\000\004\011\uffff\001\002\000\004\002\007\001\002" +
+ "\000\004\002\000\001\002\000\006\005\023\011\012\001" +
+ "\002\000\006\005\ufffd\011\ufffd\001\002\000\004\006\ufffc" +
+ "\001\002\000\004\006\014\001\002\000\004\007\015\001" +
+ "\002\000\004\016\017\001\002\000\004\013\020\001\002" +
+ "\000\004\013\ufffa\001\002\000\004\014\021\001\002\000" +
+ "\004\015\022\001\002\000\006\005\ufffb\011\ufffb\001\002" +
+ "\000\004\002\001\001\002\000\006\005\ufffe\011\ufffe\001" +
+ "\002"});
+
+ /** Access to parse-action table. */
+ public short[][] action_table() {return _action_table;}
+
+ /** <code>reduce_goto</code> table. */
+ protected static final short[][] _reduce_table =
+ lr_parser.unpackFromStrings(new String[]{
+ "\000\022\000\006\003\005\004\003\001\001\000\006\005" +
+ "\007\006\010\001\001\000\002\001\001\000\002\001\001" +
+ "\000\002\001\001\000\004\006\023\001\001\000\002\001" +
+ "\001\000\004\010\012\001\001\000\002\001\001\000\002" +
+ "\001\001\000\004\007\015\001\001\000\002\001\001\000" +
+ "\002\001\001\000\002\001\001\000\002\001\001\000\002" +
+ "\001\001\000\002\001\001\000\002\001\001"});
+
+ /** Access to <code>reduce_goto</code> table. */
+ public short[][] reduce_table() {return _reduce_table;}
+
+ /** Instance of action encapsulation class. */
+ protected CUP$parser$actions action_obj;
+
+ //Each string is of the format
+ //energy and iteraction
+ private ArrayList<String> result = new ArrayList<String>();
+ private String tempStr = "";
+
+
+ public ArrayList<String> getResult() {
+ return result;
+ }
+
+ public void addToResult(String value) {
+ result.add(value);
+ }
+
+ public String getTempStr() {
+ return tempStr;
+ }
+
+ public void setTempStr(String s) {
+ this.tempStr = s;
+ }
+
+ /*Adding the parsed data to the hash map */
+ @Override
+ public HashMap<String, String> getParsedData() throws Exception {
+ parse();
+ HashMap<String,String> results= new HashMap<String,String>();
+ int energyCount=0;
+ int iterationCount=0;
+ for(int i=0;i<result.size();i++){
+ String singleString= result.get(i);
+ String[] temp=singleString.split(" ");
+ if(temp.length>1){
+ String keyString=temp[0];
+ String dataString=temp[1];
+ if(keyString.equals("ENERGY")){
+ results.put("GscfaParser_ENERGY_"+energyCount,dataString);
+ energyCount++;
+ }else if(keyString.equals("ITERATION")){
+ results.put("GscfaParser_ITERATION_"+iterationCount,dataString);
+ iterationCount++;
+ }
+ }
+ }
+ return results;
+ }
+ /** Action encapsulation object initializer. */
+ protected void init_actions()
+ {
+ action_obj = new CUP$parser$actions(this);
+ }
+
+ /** Invoke a user supplied parse action. */
+ public java_cup.runtime.Symbol do_action(
+ int act_num,
+ java_cup.runtime.lr_parser parser,
+ java.util.Stack stack,
+ int top)
+ throws java.lang.Exception
+ {
+ /* call code in generated class */
+ return action_obj.CUP$parser$do_action(act_num, parser, stack, top);
+ }
+
+ /** Indicates start state. */
+ public int start_state() {return 0;}
+ /** Indicates start production. */
+ public int start_production() {return 1;}
+
+ /** <code>EOF</code> Symbol index. */
+ public int EOF_sym() {return 0;}
+
+ /** <code>error</code> Symbol index. */
+ public int error_sym() {return 1;}
+
+
+}
+
+/** Cup generated class to encapsulate user supplied action code.*/
+class CUP$parser$actions {
+
+
+ //__________________________________
+ public static boolean DEBUG = true;
+ private static JTable table;
+ private static final String tableLabel = "SCF Intermediate Results:";
+// private static String cycle = "0";
+
+
+ public static JTable getTable() {
+ return table;
+ }
+
+ public static String getTableLabel() {
+ return tableLabel;
+ }
+
+/* public static void main(String[] args) throws IOException {
+ File temp = new File("temporary");
+ boolean append = true;
+ try{
+ FileWriter temp1 = new FileWriter(temp, append);
+ PrintWriter temp2 = new PrintWriter(temp1);}
+
+ catch (FileNotFoundException e) {
+ System.out.println("no file, dude!");
+ } */
+// }
+
+ private final GscfaParser GscfaParser;
+
+ /** Constructor */
+ CUP$parser$actions(GscfaParser GscfaParser) {
+ this.GscfaParser = GscfaParser;
+ }
+
+ /** Method with the actual generated action code. */
+ public final java_cup.runtime.Symbol CUP$parser$do_action(
+ int CUP$parser$act_num,
+ java_cup.runtime.lr_parser CUP$parser$parser,
+ java.util.Stack CUP$parser$stack,
+ int CUP$parser$top)
+ throws java.lang.Exception
+ {
+ /* Symbol object for return from actions */
+ java_cup.runtime.Symbol CUP$parser$result;
+
+ /* select the action based on the action number */
+ switch (CUP$parser$act_num)
+ {
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 7: // en ::= ENERGY
+ {
+ Object RESULT = null;
+ int eleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left;
+ int eright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right;
+ Float e = (Float)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value;
+ //___________________________________________________________________
+ if (DEBUG) System.out.println("CUP:gscfa:scfcycle: ENERGY "+e);
+ GscfaParser.addToResult("ENERGY "+e);
+// temp2.println(e);
+// parseSCF.putField("iteration "+cycle, "energy", e);
+
+ CUP$parser$result = new java_cup.runtime.Symbol(5/*en*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 6: // scfcycle ::= INTCycle NT$0 INT1 INT2 en FLOAT1 FLOAT2 FLOAT3
+ {
+ Object RESULT = null;
+ // propagate RESULT from NT$0
+ if ( ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-6)).value != null )
+ RESULT = (Object) ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-6)).value;
+ int cleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-7)).left;
+ int cright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-7)).right;
+ Integer c = (Integer)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-7)).value;
+
+ CUP$parser$result = new java_cup.runtime.Symbol(4/*scfcycle*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-7)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 5: // NT$0 ::=
+ {
+ Object RESULT = null;
+ int cleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left;
+ int cright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right;
+ Integer c = (Integer)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value;
+ //___________________________________________________________________
+ if (DEBUG) System.out.println("CUP:gscfa:scfcycle: ITERATION "+c);
+ GscfaParser.addToResult("ITERATION "+c);
+// temp2.print(c);
+// temp2.print(" ");
+// cycle = c;
+
+// parseSCF.putField("iteration "+cycle, cycle);
+
+ CUP$parser$result = new java_cup.runtime.Symbol(6/*NT$0*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 4: // scfpat ::= scfcycle
+ {
+ Object RESULT = null;
+
+ CUP$parser$result = new java_cup.runtime.Symbol(3/*scfpat*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 3: // scfpat ::= scfpat scfcycle
+ {
+ Object RESULT = null;
+ if (DEBUG) System.out.println("CUP:gscfa: in scfpat");
+ CUP$parser$result = new java_cup.runtime.Symbol(3/*scfpat*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 2: // scfintro ::= FOUNDITER
+ {
+ Object RESULT = null;
+ if (DEBUG) System.out.println("CUP:gscfa: found start of SCF Iteration");
+ CUP$parser$result = new java_cup.runtime.Symbol(2/*scfintro*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 1: // $START ::= startpt EOF
+ {
+ Object RESULT = null;
+ int start_valleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left;
+ int start_valright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).right;
+ Object start_val = (Object)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-1)).value;
+ RESULT = start_val;
+ CUP$parser$result = new java_cup.runtime.Symbol(0/*$START*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ /* ACCEPT */
+ CUP$parser$parser.done_parsing();
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 0: // startpt ::= scfintro scfpat SCFDONE
+ {
+ Object RESULT = null;
+ if (DEBUG) System.out.println("CUP:gscfa: end of parse tree ");
+ table = new JTable();
+
+// table = parseSCF.getTable();
+
+ CUP$parser$result = new java_cup.runtime.Symbol(1/*startpt*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-2)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /* . . . . . .*/
+ default:
+ throw new Exception(
+ "Invalid action number found in internal parse table");
+
+ }
+ }
+}
+
http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gvb/GVBLexer.java
----------------------------------------------------------------------
diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gvb/GVBLexer.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gvb/GVBLexer.java
new file mode 100644
index 0000000..eaa2a0c
--- /dev/null
+++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gvb/GVBLexer.java
@@ -0,0 +1,777 @@
+/*
+*
+* Licensed to the Apache Software Foundation (ASF) under one
+* or more contributor license agreements. See the NOTICE file
+* distributed with this work for additional information
+* regarding copyright ownership. The ASF licenses this file
+* to you under the Apache License, Version 2.0 (the
+* "License"); you may not use this file except in compliance
+* with the License. You may obtain a copy of the License at
+*
+* http://www.apache.org/licenses/LICENSE-2.0
+*
+* Unless required by applicable law or agreed to in writing,
+* software distributed under the License is distributed on an
+* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+* KIND, either express or implied. See the License for the
+* specific language governing permissions and limitations
+* under the License.
+*
+*/
+package org.apache.airavata.datacat.parsers.gridchem.gvb;/* The following code was generated by JFlex 1.4.3 on 9/11/14 6:26 PM */
+
+import java_cup.runtime.Symbol;
+import org.apache.airavata.datacat.parsers.gridchem.Settings;
+
+
+/**
+ * This class is a scanner generated by
+ * <a href="http://www.jflex.de/">JFlex</a> 1.4.3
+ * on 9/11/14 6:26 PM from the specification file
+ * <tt>gvb.flex</tt>
+ */
+public class GVBLexer implements java_cup.runtime.Scanner {
+
+ /** This character denotes the end of file */
+ public static final int YYEOF = -1;
+
+ /** initial size of the lookahead buffer */
+ private static final int ZZ_BUFFERSIZE = 16384;
+
+ /** lexical states */
+ public static final int ITER2 = 6;
+ public static final int DASH = 10;
+ public static final int INTVALUE = 12;
+ public static final int SCF1 = 2;
+ public static final int IGNOREALL = 24;
+ public static final int ITER = 4;
+ public static final int YYINITIAL = 0;
+ public static final int ITER8 = 8;
+ public static final int ITER7 = 22;
+ public static final int ITER6 = 20;
+ public static final int ITER5 = 18;
+ public static final int FLOATVALUE = 14;
+ public static final int ITER4 = 16;
+
+ /**
+ * ZZ_LEXSTATE[l] is the state in the DFA for the lexical state l
+ * ZZ_LEXSTATE[l+1] is the state in the DFA for the lexical state l
+ * at the beginning of a line
+ * l is of the form l = 2*k, k a non negative integer
+ */
+ private static final int ZZ_LEXSTATE[] = {
+ 0, 0, 1, 1, 2, 2, 3, 3, 4, 4, 5, 5, 1, 1, 6, 6,
+ 7, 7, 8, 8, 9, 9, 10, 10, 1, 1
+ };
+
+ /**
+ * Translates characters to character classes
+ */
+ private static final char [] ZZ_CMAP = {
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 10, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 0, 24, 4, 0,
+ 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0,
+ 0, 13, 23, 18, 22, 8, 5, 16, 19, 6, 0, 0, 14, 0, 15, 12,
+ 0, 21, 9, 20, 7, 0, 25, 0, 11, 17, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0
+ };
+
+ /**
+ * Translates DFA states to action switch labels.
+ */
+ private static final int [] ZZ_ACTION = zzUnpackAction();
+
+ private static final String ZZ_ACTION_PACKED_0 =
+ "\13\0\2\1\2\2\1\1\2\3\3\1\3\4\10\1"+
+ "\5\0\1\5\13\0\1\6\2\0\1\7\1\10\1\11"+
+ "\1\12\65\0\1\13\1\14\1\15\62\0\1\16";
+
+ private static int [] zzUnpackAction() {
+ int [] result = new int[163];
+ int offset = 0;
+ offset = zzUnpackAction(ZZ_ACTION_PACKED_0, offset, result);
+ return result;
+ }
+
+ private static int zzUnpackAction(String packed, int offset, int [] result) {
+ int i = 0; /* index in packed string */
+ int j = offset; /* index in unpacked array */
+ int l = packed.length();
+ while (i < l) {
+ int count = packed.charAt(i++);
+ int value = packed.charAt(i++);
+ do result[j++] = value; while (--count > 0);
+ }
+ return j;
+ }
+
+
+ /**
+ * Translates a state to a row index in the transition table
+ */
+ private static final int [] ZZ_ROWMAP = zzUnpackRowMap();
+
+ private static final String ZZ_ROWMAP_PACKED_0 =
+ "\0\0\0\32\0\64\0\116\0\150\0\202\0\234\0\266"+
+ "\0\320\0\352\0\u0104\0\u011e\0\u0138\0\u011e\0\u0152\0\u016c"+
+ "\0\u011e\0\u0186\0\u01a0\0\u01ba\0\u01d4\0\u011e\0\u01ee\0\u0208"+
+ "\0\u0222\0\u023c\0\u0256\0\u0270\0\u028a\0\u02a4\0\u02be\0\u02d8"+
+ "\0\u02f2\0\u030c\0\u01a0\0\u0326\0\u0340\0\u01ee\0\u035a\0\u0222"+
+ "\0\u0374\0\u0256\0\u038e\0\u028a\0\u03a8\0\u02be\0\u03c2\0\u03dc"+
+ "\0\u03f6\0\u0326\0\u0410\0\u042a\0\u0374\0\u038e\0\u03a8\0\u03c2"+
+ "\0\u0444\0\u045e\0\u0478\0\u0492\0\u04ac\0\u04c6\0\u04e0\0\u04fa"+
+ "\0\u0514\0\u052e\0\u0548\0\u0562\0\u057c\0\u0596\0\u05b0\0\u05ca"+
+ "\0\u05e4\0\u05fe\0\u0618\0\u0632\0\u064c\0\u0666\0\u0680\0\u069a"+
+ "\0\u06b4\0\u06ce\0\u06e8\0\u0702\0\u071c\0\u0736\0\u0750\0\u076a"+
+ "\0\u0784\0\u079e\0\u07b8\0\u07d2\0\u07ec\0\u0806\0\u0820\0\u083a"+
+ "\0\u0854\0\u086e\0\u0888\0\u08a2\0\u08bc\0\u08d6\0\u08f0\0\u090a"+
+ "\0\u0924\0\u093e\0\u0958\0\u0972\0\u098c\0\u011e\0\u011e\0\u011e"+
+ "\0\u09a6\0\u09c0\0\u09da\0\u09f4\0\u0a0e\0\u0a28\0\u0a42\0\u0a5c"+
+ "\0\u0a76\0\u0a90\0\u0aaa\0\u0ac4\0\u0ade\0\u0af8\0\u0b12\0\u0b2c"+
+ "\0\u0b46\0\u0b60\0\u0b7a\0\u0b94\0\u0bae\0\u0bc8\0\u0be2\0\u0bfc"+
+ "\0\u0c16\0\u0c30\0\u0c4a\0\u0c64\0\u0c7e\0\u0c98\0\u0cb2\0\u0ccc"+
+ "\0\u0ce6\0\u0d00\0\u0d1a\0\u0d34\0\u0d4e\0\u0d68\0\u0d82\0\u0d9c"+
+ "\0\u0db6\0\u0dd0\0\u0dea\0\u0e04\0\u0e1e\0\u0e38\0\u0e52\0\u0e6c"+
+ "\0\u0e86\0\u0ea0\0\u011e";
+
+ private static int [] zzUnpackRowMap() {
+ int [] result = new int[163];
+ int offset = 0;
+ offset = zzUnpackRowMap(ZZ_ROWMAP_PACKED_0, offset, result);
+ return result;
+ }
+
+ private static int zzUnpackRowMap(String packed, int offset, int [] result) {
+ int i = 0; /* index in packed string */
+ int j = offset; /* index in unpacked array */
+ int l = packed.length();
+ while (i < l) {
+ int high = packed.charAt(i++) << 16;
+ result[j++] = high | packed.charAt(i++);
+ }
+ return j;
+ }
+
+ /**
+ * The transition table of the DFA
+ */
+ private static final int [] ZZ_TRANS = zzUnpackTrans();
+
+ private static final String ZZ_TRANS_PACKED_0 =
+ "\6\14\1\15\56\14\1\16\1\17\25\14\1\20\2\14"+
+ "\1\21\1\22\30\14\2\23\1\24\24\14\1\24\27\14"+
+ "\1\25\3\14\1\26\3\27\24\26\1\30\1\26\1\14"+
+ "\2\31\1\32\24\14\1\32\2\14\2\33\1\34\24\14"+
+ "\1\34\2\14\2\35\1\36\24\14\1\36\2\14\2\37"+
+ "\1\40\24\14\1\40\1\14\41\0\1\41\23\0\2\17"+
+ "\57\0\1\42\2\0\2\22\30\0\2\43\1\0\1\44"+
+ "\26\0\2\43\37\0\1\45\22\0\2\46\30\0\2\46"+
+ "\25\0\1\47\2\0\2\50\1\0\1\51\26\0\2\50"+
+ "\30\0\2\52\1\0\1\53\26\0\2\52\30\0\2\54"+
+ "\1\0\1\55\26\0\2\54\30\0\2\56\1\0\1\57"+
+ "\26\0\2\56\37\0\1\60\51\0\1\61\2\0\2\62"+
+ "\46\0\1\63\42\0\1\64\2\0\2\65\30\0\2\66"+
+ "\30\0\2\67\30\0\2\70\40\0\1\71\50\0\1\72"+
+ "\25\0\1\73\35\0\1\74\13\0\1\75\47\0\1\76"+
+ "\7\0\1\77\53\0\1\100\11\0\1\101\51\0\1\102"+
+ "\10\0\1\103\52\0\1\104\14\0\1\105\46\0\1\106"+
+ "\22\0\1\107\40\0\1\110\13\0\1\111\47\0\1\112"+
+ "\13\0\1\113\47\0\1\114\13\0\1\115\47\0\1\116"+
+ "\23\0\1\117\37\0\1\120\13\0\1\121\47\0\1\122"+
+ "\15\0\1\123\45\0\1\124\13\0\1\125\47\0\1\126"+
+ "\20\0\1\127\42\0\1\130\13\0\1\131\47\0\1\132"+
+ "\32\0\1\133\30\0\1\134\10\0\1\135\52\0\1\136"+
+ "\11\0\1\137\51\0\1\140\15\0\1\141\45\0\1\142"+
+ "\12\0\1\143\50\0\1\144\10\0\1\145\52\0\1\146"+
+ "\21\0\1\147\41\0\1\150\16\0\1\151\44\0\1\152"+
+ "\11\0\1\153\51\0\1\154\17\0\1\155\43\0\1\156"+
+ "\27\0\1\157\33\0\1\160\13\0\1\161\27\0\1\162"+
+ "\40\0\1\163\22\0\1\164\32\0\1\165\40\0\1\166"+
+ "\32\0\1\167\22\0\1\170\31\0\1\171\31\0\1\172"+
+ "\31\0\1\173\31\0\1\174\31\0\1\175\31\0\1\176"+
+ "\27\0\1\177\33\0\1\200\41\0\1\201\32\0\1\202"+
+ "\23\0\1\203\33\0\1\204\32\0\1\205\21\0\1\206"+
+ "\33\0\1\207\31\0\1\210\31\0\1\211\31\0\1\212"+
+ "\31\0\1\213\31\0\1\214\31\0\1\215\31\0\1\216"+
+ "\43\0\1\217\32\0\1\220\26\0\1\221\35\0\1\222"+
+ "\10\0\1\223\36\0\1\224\31\0\1\225\31\0\1\226"+
+ "\31\0\1\227\31\0\1\230\31\0\1\231\31\0\1\232"+
+ "\33\0\1\233\26\0\1\234\47\0\1\235\6\0\1\236"+
+ "\37\0\1\237\37\0\1\240\22\0\1\241\35\0\1\242"+
+ "\42\0\1\243\3\0";
+
+ private static int [] zzUnpackTrans() {
+ int [] result = new int[3770];
+ int offset = 0;
+ offset = zzUnpackTrans(ZZ_TRANS_PACKED_0, offset, result);
+ return result;
+ }
+
+ private static int zzUnpackTrans(String packed, int offset, int [] result) {
+ int i = 0; /* index in packed string */
+ int j = offset; /* index in unpacked array */
+ int l = packed.length();
+ while (i < l) {
+ int count = packed.charAt(i++);
+ int value = packed.charAt(i++);
+ value--;
+ do result[j++] = value; while (--count > 0);
+ }
+ return j;
+ }
+
+
+ /* error codes */
+ private static final int ZZ_UNKNOWN_ERROR = 0;
+ private static final int ZZ_NO_MATCH = 1;
+ private static final int ZZ_PUSHBACK_2BIG = 2;
+
+ /* error messages for the codes above */
+ private static final String ZZ_ERROR_MSG[] = {
+ "Unkown internal scanner error",
+ "Error: could not match input",
+ "Error: pushback value was too large"
+ };
+
+ /**
+ * ZZ_ATTRIBUTE[aState] contains the attributes of state <code>aState</code>
+ */
+ private static final int [] ZZ_ATTRIBUTE = zzUnpackAttribute();
+
+ private static final String ZZ_ATTRIBUTE_PACKED_0 =
+ "\13\0\1\11\1\1\1\11\2\1\1\11\4\1\1\11"+
+ "\12\1\5\0\1\1\13\0\1\1\2\0\4\1\65\0"+
+ "\3\11\62\0\1\11";
+
+ private static int [] zzUnpackAttribute() {
+ int [] result = new int[163];
+ int offset = 0;
+ offset = zzUnpackAttribute(ZZ_ATTRIBUTE_PACKED_0, offset, result);
+ return result;
+ }
+
+ private static int zzUnpackAttribute(String packed, int offset, int [] result) {
+ int i = 0; /* index in packed string */
+ int j = offset; /* index in unpacked array */
+ int l = packed.length();
+ while (i < l) {
+ int count = packed.charAt(i++);
+ int value = packed.charAt(i++);
+ do result[j++] = value; while (--count > 0);
+ }
+ return j;
+ }
+
+ /** the input device */
+ private java.io.Reader zzReader;
+
+ /** the current state of the DFA */
+ private int zzState;
+
+ /** the current lexical state */
+ private int zzLexicalState = YYINITIAL;
+
+ /** this buffer contains the current text to be matched and is
+ the source of the yytext() string */
+ private char zzBuffer[] = new char[ZZ_BUFFERSIZE];
+
+ /** the textposition at the last accepting state */
+ private int zzMarkedPos;
+
+ /** the current text position in the buffer */
+ private int zzCurrentPos;
+
+ /** startRead marks the beginning of the yytext() string in the buffer */
+ private int zzStartRead;
+
+ /** endRead marks the last character in the buffer, that has been read
+ from input */
+ private int zzEndRead;
+
+ /** number of newlines encountered up to the start of the matched text */
+ private int yyline;
+
+ /** the number of characters up to the start of the matched text */
+ private int yychar;
+
+ /**
+ * the number of characters from the last newline up to the start of the
+ * matched text
+ */
+ private int yycolumn;
+
+ /**
+ * zzAtBOL == true <=> the scanner is currently at the beginning of a line
+ */
+ private boolean zzAtBOL = true;
+
+ /** zzAtEOF == true <=> the scanner is at the EOF */
+ private boolean zzAtEOF;
+
+ /** denotes if the user-EOF-code has already been executed */
+ private boolean zzEOFDone;
+
+ /* user code: */
+ public static boolean DEBUG = false;
+
+
+ /**
+ * Creates a new scanner
+ * There is also a java.io.InputStream version of this constructor.
+ *
+ * @param in the java.io.Reader to read input from.
+ */
+ public GVBLexer(java.io.Reader in) {
+ this.zzReader = in;
+ }
+
+ /**
+ * Creates a new scanner.
+ * There is also java.io.Reader version of this constructor.
+ *
+ * @param in the java.io.Inputstream to read input from.
+ */
+ public GVBLexer(java.io.InputStream in) {
+ this(new java.io.InputStreamReader(in));
+ }
+
+
+ /**
+ * Refills the input buffer.
+ *
+ * @return <code>false</code>, iff there was new input.
+ *
+ * @exception java.io.IOException if any I/O-Error occurs
+ */
+ private boolean zzRefill() throws java.io.IOException {
+
+ /* first: make room (if you can) */
+ if (zzStartRead > 0) {
+ System.arraycopy(zzBuffer, zzStartRead,
+ zzBuffer, 0,
+ zzEndRead-zzStartRead);
+
+ /* translate stored positions */
+ zzEndRead-= zzStartRead;
+ zzCurrentPos-= zzStartRead;
+ zzMarkedPos-= zzStartRead;
+ zzStartRead = 0;
+ }
+
+ /* is the buffer big enough? */
+ if (zzCurrentPos >= zzBuffer.length) {
+ /* if not: blow it up */
+ char newBuffer[] = new char[zzCurrentPos*2];
+ System.arraycopy(zzBuffer, 0, newBuffer, 0, zzBuffer.length);
+ zzBuffer = newBuffer;
+ }
+
+ /* finally: fill the buffer with new input */
+ int numRead = zzReader.read(zzBuffer, zzEndRead,
+ zzBuffer.length-zzEndRead);
+
+ if (numRead > 0) {
+ zzEndRead+= numRead;
+ return false;
+ }
+ // unlikely but not impossible: read 0 characters, but not at end of stream
+ if (numRead == 0) {
+ int c = zzReader.read();
+ if (c == -1) {
+ return true;
+ } else {
+ zzBuffer[zzEndRead++] = (char) c;
+ return false;
+ }
+ }
+
+ // numRead < 0
+ return true;
+ }
+
+
+ /**
+ * Closes the input stream.
+ */
+ public final void yyclose() throws java.io.IOException {
+ zzAtEOF = true; /* indicate end of file */
+ zzEndRead = zzStartRead; /* invalidate buffer */
+
+ if (zzReader != null)
+ zzReader.close();
+ }
+
+
+ /**
+ * Resets the scanner to read from a new input stream.
+ * Does not close the old reader.
+ *
+ * All internal variables are reset, the old input stream
+ * <b>cannot</b> be reused (internal buffer is discarded and lost).
+ * Lexical state is set to <tt>ZZ_INITIAL</tt>.
+ *
+ * @param reader the new input stream
+ */
+ public final void yyreset(java.io.Reader reader) {
+ zzReader = reader;
+ zzAtBOL = true;
+ zzAtEOF = false;
+ zzEOFDone = false;
+ zzEndRead = zzStartRead = 0;
+ zzCurrentPos = zzMarkedPos = 0;
+ yyline = yychar = yycolumn = 0;
+ zzLexicalState = YYINITIAL;
+ }
+
+
+ /**
+ * Returns the current lexical state.
+ */
+ public final int yystate() {
+ return zzLexicalState;
+ }
+
+
+ /**
+ * Enters a new lexical state
+ *
+ * @param newState the new lexical state
+ */
+ public final void yybegin(int newState) {
+ zzLexicalState = newState;
+ }
+
+
+ /**
+ * Returns the text matched by the current regular expression.
+ */
+ public final String yytext() {
+ return new String( zzBuffer, zzStartRead, zzMarkedPos-zzStartRead );
+ }
+
+
+ /**
+ * Returns the character at position <tt>pos</tt> from the
+ * matched text.
+ *
+ * It is equivalent to yytext().charAt(pos), but faster
+ *
+ * @param pos the position of the character to fetch.
+ * A value from 0 to yylength()-1.
+ *
+ * @return the character at position pos
+ */
+ public final char yycharat(int pos) {
+ return zzBuffer[zzStartRead+pos];
+ }
+
+
+ /**
+ * Returns the length of the matched text region.
+ */
+ public final int yylength() {
+ return zzMarkedPos-zzStartRead;
+ }
+
+
+ /**
+ * Reports an error that occured while scanning.
+ *
+ * In a wellformed scanner (no or only correct usage of
+ * yypushback(int) and a match-all fallback rule) this method
+ * will only be called with things that "Can't Possibly Happen".
+ * If this method is called, something is seriously wrong
+ * (e.g. a JFlex bug producing a faulty scanner etc.).
+ *
+ * Usual syntax/scanner level error handling should be done
+ * in error fallback rules.
+ *
+ * @param errorCode the code of the errormessage to display
+ */
+ private void zzScanError(int errorCode) {
+ String message;
+ try {
+ message = ZZ_ERROR_MSG[errorCode];
+ }
+ catch (ArrayIndexOutOfBoundsException e) {
+ message = ZZ_ERROR_MSG[ZZ_UNKNOWN_ERROR];
+ }
+
+ throw new Error(message);
+ }
+
+
+ /**
+ * Pushes the specified amount of characters back into the input stream.
+ *
+ * They will be read again by then next call of the scanning method
+ *
+ * @param number the number of characters to be read again.
+ * This number must not be greater than yylength()!
+ */
+ public void yypushback(int number) {
+ if ( number > yylength() )
+ zzScanError(ZZ_PUSHBACK_2BIG);
+
+ zzMarkedPos -= number;
+ }
+
+
+ /**
+ * Contains user EOF-code, which will be executed exactly once,
+ * when the end of file is reached
+ */
+ private void zzDoEOF() throws java.io.IOException {
+ if (!zzEOFDone) {
+ zzEOFDone = true;
+ yyclose();
+ }
+ }
+
+
+ /**
+ * Resumes scanning until the next regular expression is matched,
+ * the end of input is encountered or an I/O-Error occurs.
+ *
+ * @return the next token
+ * @exception java.io.IOException if any I/O-Error occurs
+ */
+ public java_cup.runtime.Symbol next_token() throws java.io.IOException {
+ int zzInput;
+ int zzAction;
+
+ // cached fields:
+ int zzCurrentPosL;
+ int zzMarkedPosL;
+ int zzEndReadL = zzEndRead;
+ char [] zzBufferL = zzBuffer;
+ char [] zzCMapL = ZZ_CMAP;
+
+ int [] zzTransL = ZZ_TRANS;
+ int [] zzRowMapL = ZZ_ROWMAP;
+ int [] zzAttrL = ZZ_ATTRIBUTE;
+
+ while (true) {
+ zzMarkedPosL = zzMarkedPos;
+
+ zzAction = -1;
+
+ zzCurrentPosL = zzCurrentPos = zzStartRead = zzMarkedPosL;
+
+ zzState = ZZ_LEXSTATE[zzLexicalState];
+
+
+ zzForAction: {
+ while (true) {
+
+ if (zzCurrentPosL < zzEndReadL)
+ zzInput = zzBufferL[zzCurrentPosL++];
+ else if (zzAtEOF) {
+ zzInput = YYEOF;
+ break zzForAction;
+ }
+ else {
+ // store back cached positions
+ zzCurrentPos = zzCurrentPosL;
+ zzMarkedPos = zzMarkedPosL;
+ boolean eof = zzRefill();
+ // get translated positions and possibly new buffer
+ zzCurrentPosL = zzCurrentPos;
+ zzMarkedPosL = zzMarkedPos;
+ zzBufferL = zzBuffer;
+ zzEndReadL = zzEndRead;
+ if (eof) {
+ zzInput = YYEOF;
+ break zzForAction;
+ }
+ else {
+ zzInput = zzBufferL[zzCurrentPosL++];
+ }
+ }
+ int zzNext = zzTransL[ zzRowMapL[zzState] + zzCMapL[zzInput] ];
+ if (zzNext == -1) break zzForAction;
+ zzState = zzNext;
+
+ int zzAttributes = zzAttrL[zzState];
+ if ( (zzAttributes & 1) == 1 ) {
+ zzAction = zzState;
+ zzMarkedPosL = zzCurrentPosL;
+ if ( (zzAttributes & 8) == 8 ) break zzForAction;
+ }
+
+ }
+ }
+
+ // store back cached position
+ zzMarkedPos = zzMarkedPosL;
+
+ switch (zzAction < 0 ? zzAction : ZZ_ACTION[zzAction]) {
+ case 10:
+ { if (Settings.DEBUG) System.out.println("GVBFlex: Found float3");
+ yybegin(ITER);
+ return new Symbol(GVBSym.FLOAT3);
+ }
+ case 15: break;
+ case 11:
+ { if (Settings.DEBUG) System.out.println("GVBFlex: Found the dash");
+ yybegin(DASH);
+ }
+ case 16: break;
+ case 13:
+ { yybegin(DASH);
+ }
+ case 17: break;
+ case 14:
+ { if (Settings.DEBUG) System.out.println("GVBFlex: Found START OF");
+ yybegin(ITER);
+ return new Symbol(GVBSym.FOUNDITER);
+ }
+ case 18: break;
+ case 7:
+ { if (Settings.DEBUG) System.out.println("GVBFlex: Found the energy");
+ if (Settings.DEBUG) System.out.println(yytext());
+ yybegin(ITER5);
+ return new Symbol(GVBSym.ENERGY, new Float(yytext()));
+ }
+ case 19: break;
+ case 6:
+ { if (Settings.DEBUG) System.out.println("GVBFlex: Found float4");
+ yybegin(ITER);
+ return new Symbol(GVBSym.FLOAT4);
+ }
+ case 20: break;
+ case 12:
+ { yybegin(IGNOREALL);
+ return new Symbol(GVBSym.SCFDONE);
+ }
+ case 21: break;
+ case 9:
+ { if (Settings.DEBUG) System.out.println("GVBFlex: Found float2");
+ yybegin (ITER7);
+ return new Symbol(GVBSym.FLOAT2);
+ }
+ case 22: break;
+ case 2:
+ { if (Settings.DEBUG) System.out.println("GVBFlex: Found the first integer in the iteration");
+ if (Settings.DEBUG) System.out.println(yytext());
+ yybegin(ITER2);
+ return new Symbol(GVBSym.INTCycle, new Integer(yytext()));
+ }
+ case 23: break;
+ case 8:
+ { if (Settings.DEBUG) System.out.println("GVBFlex: ITER5");
+ if (Settings.DEBUG) System.out.println("GVBFlex: Found float1");
+ yybegin (ITER6);
+ return new Symbol(GVBSym.FLOAT1);
+ }
+ case 24: break;
+ case 5:
+ { if (Settings.DEBUG) System.out.println("GVBFlex: Found float value");
+ yybegin(ITER);
+ }
+ case 25: break;
+ case 4:
+ { if (Settings.DEBUG) System.out.println("GVBFlex: Found new line");
+ }
+ case 26: break;
+ case 1:
+ {
+ }
+ case 27: break;
+ case 3:
+ { if (Settings.DEBUG) System.out.println("GVBFlex: Found the second integer in the iteration"); if (Settings.DEBUG) System.out.println(yytext()); yybegin(ITER4); return new Symbol(GVBSym.INT1, new Integer(yytext()));
+ }
+ case 28: break;
+ default:
+ if (zzInput == YYEOF && zzStartRead == zzCurrentPos) {
+ zzAtEOF = true;
+ zzDoEOF();
+ { return new java_cup.runtime.Symbol(GVBSym.EOF); }
+ }
+ else {
+ zzScanError(ZZ_NO_MATCH);
+ }
+ }
+ }
+ }
+
+ /**
+ * Converts an int token code into the name of the
+ * token by reflection on the cup symbol class/interface sym
+ *
+ * This code was contributed by Karl Meissner <me...@yahoo.com>
+ */
+ private String getTokenName(int token) {
+ try {
+ java.lang.reflect.Field [] classFields = GVBSym.class.getFields();
+ for (int i = 0; i < classFields.length; i++) {
+ if (classFields[i].getInt(null) == token) {
+ return classFields[i].getName();
+ }
+ }
+ } catch (Exception e) {
+ e.printStackTrace(System.err);
+ }
+
+ return "UNKNOWN TOKEN";
+ }
+
+ /**
+ * Same as next_token but also prints the token to standard out
+ * for debugging.
+ *
+ * This code was contributed by Karl Meissner <me...@yahoo.com>
+ */
+ public java_cup.runtime.Symbol debug_next_token() throws java.io.IOException {
+ java_cup.runtime.Symbol s = next_token();
+ System.out.println( " --"+ yytext() + "--" + getTokenName(s.sym) + "--");
+ return s;
+ }
+
+ /**
+ * Runs the scanner on input files.
+ *
+ * This is a standalone scanner, it will print any unmatched
+ * text to System.out unchanged.
+ *
+ * @param argv the command line, contains the filenames to run
+ * the scanner on.
+ */
+ public static void main(String argv[]) {
+ if (argv.length == 0) {
+ System.out.println("Usage : java GVBLexer <inputfile>");
+ }
+ else {
+ for (int i = 0; i < argv.length; i++) {
+ GVBLexer scanner = null;
+ try {
+ scanner = new GVBLexer( new java.io.FileReader(argv[i]) );
+ while ( !scanner.zzAtEOF ) scanner.next_token();
+ }
+ catch (java.io.FileNotFoundException e) {
+ System.out.println("File not found : \""+argv[i]+"\"");
+ }
+ catch (java.io.IOException e) {
+ System.out.println("IO error scanning file \""+argv[i]+"\"");
+ System.out.println(e);
+ }
+ catch (Exception e) {
+ System.out.println("Unexpected exception:");
+ e.printStackTrace();
+ }
+ }
+ }
+ }
+
+
+}
http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gvb/GVBParser.java
----------------------------------------------------------------------
diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gvb/GVBParser.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gvb/GVBParser.java
new file mode 100644
index 0000000..507da25
--- /dev/null
+++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gvb/GVBParser.java
@@ -0,0 +1,335 @@
+/*
+*
+* Licensed to the Apache Software Foundation (ASF) under one
+* or more contributor license agreements. See the NOTICE file
+* distributed with this work for additional information
+* regarding copyright ownership. The ASF licenses this file
+* to you under the Apache License, Version 2.0 (the
+* "License"); you may not use this file except in compliance
+* with the License. You may obtain a copy of the License at
+*
+* http://www.apache.org/licenses/LICENSE-2.0
+*
+* Unless required by applicable law or agreed to in writing,
+* software distributed under the License is distributed on an
+* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+* KIND, either express or implied. See the License for the
+* specific language governing permissions and limitations
+* under the License.
+*
+*/
+package org.apache.airavata.datacat.parsers.gridchem.gvb;
+
+
+import java_cup.runtime.lr_parser;
+import org.apache.airavata.datacat.parsers.gridchem.GridChemQueueParser;
+
+import javax.swing.*;
+import java.io.FileReader;
+import java.util.ArrayList;
+import java.util.HashMap;
+
+
+public class GVBParser extends java_cup.runtime.lr_parser implements GridChemQueueParser {
+
+ /** Default constructor. */
+ public GVBParser() {super();}
+
+ /** Constructor which sets the default scanner. */
+ public GVBParser(java_cup.runtime.Scanner s) {super(s);}
+
+ /**
+ * Constructor which uses a file reader.
+ */
+ public GVBParser(final FileReader fileReader) {
+ super(new GVBLexer(fileReader));
+ }
+ /** Production table. */
+ protected static final short[][] _production_table =
+ lr_parser.unpackFromStrings(new String[]{
+ "\000\010\000\002\003\005\000\002\002\004\000\002\004" +
+ "\003\000\002\005\004\000\002\005\003\000\002\010\002" +
+ "\000\002\006\011\000\002\007\003"});
+
+ /** Access to production table. */
+ public short[][] production_table() {return _production_table;}
+
+ /** Parse-action table. */
+ protected static final short[][] _action_table =
+ lr_parser.unpackFromStrings(new String[]{
+ "\000\021\000\004\004\005\001\002\000\004\011\012\001" +
+ "\002\000\004\011\uffff\001\002\000\004\002\007\001\002" +
+ "\000\004\002\000\001\002\000\006\005\022\011\012\001" +
+ "\002\000\006\005\ufffd\011\ufffd\001\002\000\004\006\ufffc" +
+ "\001\002\000\004\006\014\001\002\000\004\016\016\001" +
+ "\002\000\004\013\017\001\002\000\004\013\ufffa\001\002" +
+ "\000\004\014\020\001\002\000\004\015\021\001\002\000" +
+ "\006\005\ufffb\011\ufffb\001\002\000\004\002\001\001\002" +
+ "\000\006\005\ufffe\011\ufffe\001\002"});
+
+ /** Access to parse-action table. */
+ public short[][] action_table() {return _action_table;}
+
+ /** <code>reduce_goto</code> table. */
+ protected static final short[][] _reduce_table =
+ lr_parser.unpackFromStrings(new String[]{
+ "\000\021\000\006\003\005\004\003\001\001\000\006\005" +
+ "\007\006\010\001\001\000\002\001\001\000\002\001\001" +
+ "\000\002\001\001\000\004\006\022\001\001\000\002\001" +
+ "\001\000\004\010\012\001\001\000\002\001\001\000\004" +
+ "\007\014\001\001\000\002\001\001\000\002\001\001\000" +
+ "\002\001\001\000\002\001\001\000\002\001\001\000\002" +
+ "\001\001\000\002\001\001"});
+
+ /** Access to <code>reduce_goto</code> table. */
+ public short[][] reduce_table() {return _reduce_table;}
+
+ /** Instance of action encapsulation class. */
+ protected CUP$parser$actions action_obj;
+
+ //Each string is of the format
+ //energy and iteraction
+ private ArrayList<String> result = new ArrayList<String>();
+ private String tempStr = "";
+
+
+ public ArrayList<String> getResult() {
+ return result;
+ }
+
+ public void addToResult(String value) {
+ result.add(value);
+ }
+
+ public String getTempStr() {
+ return tempStr;
+ }
+
+ public void setTempStr(String s) {
+ this.tempStr = s;
+ }
+
+ /*Adding the parsed data to the hash map */
+ @Override
+ public HashMap<String, String> getParsedData() throws Exception {
+ parse();
+ HashMap<String,String> results= new HashMap<String,String>();
+ int energyCount=0;
+ int iterationCount=0;
+ for(int i=0;i<result.size();i++){
+ String singleString= result.get(i);
+ String[] temp=singleString.split(" ");
+ if(temp.length>1){
+ String keyString=temp[0];
+ String dataString=temp[1];
+ if(keyString.equals("ENERGY")){
+ results.put("GVBParser_ENERGY_"+energyCount,dataString);
+ energyCount++;
+ }else if(keyString.equals("ITERATION")){
+ results.put("GVBParser_ITERATION_"+iterationCount,dataString);
+ iterationCount++;
+ }
+ }
+ }
+ return results;
+ }
+
+ /** Action encapsulation object initializer. */
+ protected void init_actions()
+ {
+ action_obj = new CUP$parser$actions(this);
+ }
+
+ /** Invoke a user supplied parse action. */
+ public java_cup.runtime.Symbol do_action(
+ int act_num,
+ java_cup.runtime.lr_parser parser,
+ java.util.Stack stack,
+ int top)
+ throws java.lang.Exception
+ {
+ /* call code in generated class */
+ return action_obj.CUP$parser$do_action(act_num, parser, stack, top);
+ }
+
+ /** Indicates start state. */
+ public int start_state() {return 0;}
+ /** Indicates start production. */
+ public int start_production() {return 1;}
+
+ /** <code>EOF</code> Symbol index. */
+ public int EOF_sym() {return 0;}
+
+ /** <code>error</code> Symbol index. */
+ public int error_sym() {return 1;}
+
+
+}
+
+/** Cup generated class to encapsulate user supplied action code.*/
+class CUP$parser$actions {
+
+
+ //__________________________________
+ public static boolean DEBUG = true;
+ private static JTable table;
+ private static final String tableLabel = "SCF Intermediate Results:";
+// private static String cycle = "0";
+
+
+ public static JTable getTable() {
+ return table;
+ }
+
+ public static String getTableLabel() {
+ return tableLabel;
+ }
+
+/* public static void main(String[] args) throws IOException {
+ File temp = new File("temporary");
+ boolean append = true;
+ try{
+ FileWriter temp1 = new FileWriter(temp, append);
+ PrintWriter temp2 = new PrintWriter(temp1);}
+
+ catch (FileNotFoundException e) {
+ System.out.println("no file, dude!");
+ } */
+// }
+
+ private final GVBParser GVBParser;
+
+ /** Constructor */
+ CUP$parser$actions(GVBParser GVBParser) {
+ this.GVBParser = GVBParser;
+ }
+
+ /** Method with the actual generated action code. */
+ public final java_cup.runtime.Symbol CUP$parser$do_action(
+ int CUP$parser$act_num,
+ java_cup.runtime.lr_parser CUP$parser$parser,
+ java.util.Stack CUP$parser$stack,
+ int CUP$parser$top)
+ throws java.lang.Exception
+ {
+ /* Symbol object for return from actions */
+ java_cup.runtime.Symbol CUP$parser$result;
+
+ /* select the action based on the action number */
+ switch (CUP$parser$act_num)
+ {
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 7: // en ::= ENERGY
+ {
+ Object RESULT = null;
+ int eleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left;
+ int eright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right;
+ Float e = (Float)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value;
+ //___________________________________________________________________
+ if (DEBUG) System.out.println("CUP:gscfa:scfcycle: ENERGY "+e);
+ GVBParser.addToResult("ENERGY "+e);
+// temp2.println(e);
+// parseSCF.putField("iteration "+cycle, "energy", e);
+
+ CUP$parser$result = new java_cup.runtime.Symbol(5/*en*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 6: // scfcycle ::= INTCycle NT$0 INT1 en FLOAT1 FLOAT2 FLOAT3
+ {
+ Object RESULT = null;
+ // propagate RESULT from NT$0
+ if ( ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-5)).value != null )
+ RESULT = (Object) ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-5)).value;
+ int cleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-6)).left;
+ int cright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-6)).right;
+ Integer c = (Integer)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-6)).value;
+
+ CUP$parser$result = new java_cup.runtime.Symbol(4/*scfcycle*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-6)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 5: // NT$0 ::=
+ {
+ Object RESULT = null;
+ int cleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left;
+ int cright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right;
+ Integer c = (Integer)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value;
+ //___________________________________________________________________
+ if (DEBUG) System.out.println("CUP:gscfa:scfcycle: ITERATION "+c);
+ GVBParser.addToResult("ITERATION "+c);
+// temp2.print(c);
+// temp2.print(" ");
+// cycle = c;
+
+// parseSCF.putField("iteration "+cycle, cycle);
+
+ CUP$parser$result = new java_cup.runtime.Symbol(6/*NT$0*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 4: // scfpat ::= scfcycle
+ {
+ Object RESULT = null;
+
+ CUP$parser$result = new java_cup.runtime.Symbol(3/*scfpat*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 3: // scfpat ::= scfpat scfcycle
+ {
+ Object RESULT = null;
+ if (DEBUG) System.out.println("CUP:gscfa: in scfpat");
+ CUP$parser$result = new java_cup.runtime.Symbol(3/*scfpat*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 2: // scfintro ::= FOUNDITER
+ {
+ Object RESULT = null;
+ if (DEBUG) System.out.println("CUP:gscfa: found start of SCF Iteration");
+ CUP$parser$result = new java_cup.runtime.Symbol(2/*scfintro*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 1: // $START ::= startpt EOF
+ {
+ Object RESULT = null;
+ int start_valleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left;
+ int start_valright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).right;
+ Object start_val = (Object)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-1)).value;
+ RESULT = start_val;
+ CUP$parser$result = new java_cup.runtime.Symbol(0/*$START*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ /* ACCEPT */
+ CUP$parser$parser.done_parsing();
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 0: // startpt ::= scfintro scfpat SCFDONE
+ {
+ Object RESULT = null;
+ if (DEBUG) System.out.println("CUP:gscfa: end of parse tree ");
+ table = new JTable();
+
+// table = parseSCF.getTable();
+
+ CUP$parser$result = new java_cup.runtime.Symbol(1/*startpt*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-2)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /* . . . . . .*/
+ default:
+ throw new Exception(
+ "Invalid action number found in internal parse table");
+
+ }
+ }
+}
+
http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gvb/GVBSym.java
----------------------------------------------------------------------
diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gvb/GVBSym.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gvb/GVBSym.java
new file mode 100644
index 0000000..b398de2
--- /dev/null
+++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gvb/GVBSym.java
@@ -0,0 +1,45 @@
+/*
+*
+* Licensed to the Apache Software Foundation (ASF) under one
+* or more contributor license agreements. See the NOTICE file
+* distributed with this work for additional information
+* regarding copyright ownership. The ASF licenses this file
+* to you under the Apache License, Version 2.0 (the
+* "License"); you may not use this file except in compliance
+* with the License. You may obtain a copy of the License at
+*
+* http://www.apache.org/licenses/LICENSE-2.0
+*
+* Unless required by applicable law or agreed to in writing,
+* software distributed under the License is distributed on an
+* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+* KIND, either express or implied. See the License for the
+* specific language governing permissions and limitations
+* under the License.
+*
+*/
+package org.apache.airavata.datacat.parsers.gridchem.gvb;
+//----------------------------------------------------
+// The following code was generated by CUP v0.10k
+// Thu Sep 11 18:26:09 IST 2014
+//----------------------------------------------------
+
+/** CUP generated class containing symbol constants. */
+public class GVBSym {
+ /* terminals */
+ public static final int INTCycle = 7;
+ public static final int ENERGY = 12;
+ public static final int EOF = 0;
+ public static final int INT3 = 6;
+ public static final int INT2 = 5;
+ public static final int INT1 = 4;
+ public static final int error = 1;
+ public static final int FLOAT4 = 13;
+ public static final int FLOAT3 = 11;
+ public static final int FLOAT2 = 10;
+ public static final int SCFDONE = 3;
+ public static final int FLOAT1 = 9;
+ public static final int FOUNDITER = 2;
+ public static final int FLOAT = 8;
+}
+
http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/inchi/InChI.java
----------------------------------------------------------------------
diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/inchi/InChI.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/inchi/InChI.java
new file mode 100644
index 0000000..9c2dd80
--- /dev/null
+++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/inchi/InChI.java
@@ -0,0 +1,47 @@
+/*
+*
+* Licensed to the Apache Software Foundation (ASF) under one
+* or more contributor license agreements. See the NOTICE file
+* distributed with this work for additional information
+* regarding copyright ownership. The ASF licenses this file
+* to you under the Apache License, Version 2.0 (the
+* "License"); you may not use this file except in compliance
+* with the License. You may obtain a copy of the License at
+*
+* http://www.apache.org/licenses/LICENSE-2.0
+*
+* Unless required by applicable law or agreed to in writing,
+* software distributed under the License is distributed on an
+* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+* KIND, either express or implied. See the License for the
+* specific language governing permissions and limitations
+* under the License.
+*
+*/
+package org.apache.airavata.datacat.parsers.gridchem.inchi;
+
+public class InChI {
+ private String inchi;
+ private String inchiKey;
+
+ public InChI(String inchi, String inchiKey) {
+ this.inchi = inchi;
+ this.inchiKey = inchiKey;
+ }
+
+ public String getInchiKey() {
+ return inchiKey;
+ }
+
+ public void setInchiKey(String inchiKey) {
+ this.inchiKey = inchiKey;
+ }
+
+ public String getInchi() {
+ return inchi;
+ }
+
+ public void setInchi(String inchi) {
+ this.inchi = inchi;
+ }
+}