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Posted to notifications@ctakes.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2014/07/15 23:38:56 UTC
Build failed in Jenkins: ctakes-trunk-compiletest #514
See <https://builds.apache.org/job/ctakes-trunk-compiletest/514/changes>
Changes:
[tmill] CTAKES-304: Added classes for reading/querying neural word embeddings.
[tmill] Added class for analyzing coref links relative to paragraph similarity.
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[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-temporal ---
[INFO]
[INFO] --- maven-dependency-plugin:2.6:unpack (unpack) @ ctakes-temporal ---
[INFO] Configured Artifact: net.sourceforge.ctakesresources:ctakes-resources-umls2011ab:3.1.1:jar
[INFO] Unpacking /home/jenkins/jenkins-slave/maven-repositories/1/net/sourceforge/ctakesresources/ctakes-resources-umls2011ab/3.1.1/ctakes-resources-umls2011ab-3.1.1.jar to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/target/unpacked> with includes "" and excludes ""
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-temporal ---
Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-temporal ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-temporal ---
[INFO] Compiling 134 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[17,67] error: package org.apache.ctakes.temporal.eval.EvaluationOfEventCoreference does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[23,48] error: cannot find symbol
[ERROR] symbol: class Markable
location: package org.apache.ctakes.typesystem.type.textsem
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventTimeRelations.java>:[331,29] [deprecation] createAnnotatorDescription(File) in EventTimeRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventEventRelations.java>:[139,35] [deprecation] createAnnotatorDescription(File) in EventEventRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[351,29] [deprecation] createAnnotatorDescription(File) in EventTimeRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[352,50] [deprecation] createAnnotatorDescription(File) in EventEventRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[353,50] [deprecation] createAnnotatorDescription(File) in EventDischargeTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[354,50] [deprecation] createAnnotatorDescription(File) in EventAdmissionTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[71,74] error: cannot find symbol
[ERROR] symbol: class ParagraphAnnotator
location: class CoreferenceLinkDistanceAnalyzer
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[92,10] error: cannot find symbol
[ERROR] symbol: class Markable
location: class CoreferenceLinkDistanceAnalyzer
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[92,54] error: unexpected type
[ERROR] required: class
found: <K,V>HashMap<K,V>
where K,V are type-variables:
K extends Object declared in class HashMap
V extends Object declared in class HashMap
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[97,19] error: cannot find symbol
[ERROR] symbol: class Markable
location: class CoreferenceLinkDistanceAnalyzer
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[97,74] error: cannot find symbol
[ERROR] symbol: class Markable
location: class CoreferenceLinkDistanceAnalyzer
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[98,12] error: cannot find symbol
[ERROR] symbol: class Markable
location: class CoreferenceLinkDistanceAnalyzer
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[181,10] error: cannot find symbol
[ERROR] symbol: class Markable
location: class CoreferenceLinkDistanceAnalyzer
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[181,29] error: cannot find symbol
[ERROR] symbol: class Markable
location: class CoreferenceLinkDistanceAnalyzer
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java>:[180,42] [deprecation] createAnnotatorDescription(File) in DocTimeRelAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java>:[181,50] [deprecation] createAnnotatorDescription(File) in ContextualModalityAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[75,38] [deprecation] createEnsembleDescription(File,String) in BackwardsTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[78,46] [deprecation] createEnsembleDescription(File,String) in ConstituencyBasedTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[81,32] [deprecation] createEnsembleDescription(File,String) in CRFTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[104,38] [deprecation] createEnsembleDescription(File,String) in BackwardsTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[107,46] [deprecation] createEnsembleDescription(File,String) in ConstituencyBasedTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[110,32] [deprecation] createEnsembleDescription(File,String) in CRFTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTimeSpans.java>:[248,23] [deprecation] createAnnotatorDescription(File) in TimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfNEPredicateEventSpans.java>:[77,37] [deprecation] createAnnotatorDescription(File) in NEPredicateEventAnnotator has been deprecated
[INFO] 26 errors
[INFO] -------------------------------------------------------------
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[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [33.004s]
[INFO] Apache cTAKES common type system .................. SUCCESS [18.421s]
[INFO] Apache cTAKES utils ............................... SUCCESS [6.887s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [5.766s]
[INFO] Apache cTAKES core ................................ SUCCESS [23.380s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [2.609s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [8.394s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [2.878s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [6.123s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [6.278s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [1:03.022s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [8.713s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [3.386s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [3.017s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [8.074s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [2.780s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [8.312s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [3.130s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [6.401s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [3.233s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [2.684s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [2.764s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [35.492s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [17.377s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [56.336s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [2.840s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [5.837s]
[INFO] Apache cTAKES Resources side-effect ............... SUCCESS [2.316s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [6.879s]
[INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [1.148s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [6.937s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [3.399s]
[INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [1.198s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [6.318s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [11.906s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [2.543s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [2.572s]
[INFO] Apache cTAKES YTEX ................................ SUCCESS [14.350s]
[INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [8.724s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [5.612s]
[INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [15.563s]
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SKIPPED
[INFO] Apache cTAKES dictionary lookup fast .............. SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 8:13.120s
[INFO] Finished at: Tue Jul 15 21:37:53 UTC 2014
[INFO] Final Memory: 80M/298M
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[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-temporal: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[17,67] error: package org.apache.ctakes.temporal.eval.EvaluationOfEventCoreference does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[23,48] error: cannot find symbol
[ERROR] symbol: class Markable
[ERROR] location: package org.apache.ctakes.typesystem.type.textsem
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventTimeRelations.java>:[331,29] [deprecation] createAnnotatorDescription(File) in EventTimeRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventEventRelations.java>:[139,35] [deprecation] createAnnotatorDescription(File) in EventEventRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[351,29] [deprecation] createAnnotatorDescription(File) in EventTimeRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[352,50] [deprecation] createAnnotatorDescription(File) in EventEventRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[353,50] [deprecation] createAnnotatorDescription(File) in EventDischargeTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[354,50] [deprecation] createAnnotatorDescription(File) in EventAdmissionTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[71,74] error: cannot find symbol
[ERROR] symbol: class ParagraphAnnotator
[ERROR] location: class CoreferenceLinkDistanceAnalyzer
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[92,10] error: cannot find symbol
[ERROR] symbol: class Markable
[ERROR] location: class CoreferenceLinkDistanceAnalyzer
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[92,54] error: unexpected type
[ERROR] required: class
[ERROR] found: <K,V>HashMap<K,V>
[ERROR] where K,V are type-variables:
[ERROR] K extends Object declared in class HashMap
[ERROR] V extends Object declared in class HashMap
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[97,19] error: cannot find symbol
[ERROR] symbol: class Markable
[ERROR] location: class CoreferenceLinkDistanceAnalyzer
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[97,74] error: cannot find symbol
[ERROR] symbol: class Markable
[ERROR] location: class CoreferenceLinkDistanceAnalyzer
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[98,12] error: cannot find symbol
[ERROR] symbol: class Markable
[ERROR] location: class CoreferenceLinkDistanceAnalyzer
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[181,10] error: cannot find symbol
[ERROR] symbol: class Markable
[ERROR] location: class CoreferenceLinkDistanceAnalyzer
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[181,29] error: cannot find symbol
[ERROR] symbol: class Markable
[ERROR] location: class CoreferenceLinkDistanceAnalyzer
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java>:[180,42] [deprecation] createAnnotatorDescription(File) in DocTimeRelAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java>:[181,50] [deprecation] createAnnotatorDescription(File) in ContextualModalityAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[75,38] [deprecation] createEnsembleDescription(File,String) in BackwardsTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[78,46] [deprecation] createEnsembleDescription(File,String) in ConstituencyBasedTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[81,32] [deprecation] createEnsembleDescription(File,String) in CRFTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[104,38] [deprecation] createEnsembleDescription(File,String) in BackwardsTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[107,46] [deprecation] createEnsembleDescription(File,String) in ConstituencyBasedTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[110,32] [deprecation] createEnsembleDescription(File,String) in CRFTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTimeSpans.java>:[248,23] [deprecation] createAnnotatorDescription(File) in TimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfNEPredicateEventSpans.java>:[77,37] [deprecation] createAnnotatorDescription(File) in NEPredicateEventAnnotator has been deprecated
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
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Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/516/changes>
Changes:
[tmill] CTAKES-199: Event coreference annotator and evaluator.
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[INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/target/surefire-reports>
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T E S T S
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Results :
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[INFO] Building Apache cTAKES Temporal Information Extraction 3.2.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-temporal ---
[INFO]
[INFO] --- maven-dependency-plugin:2.6:unpack (unpack) @ ctakes-temporal ---
[INFO] Configured Artifact: net.sourceforge.ctakesresources:ctakes-resources-umls2011ab:3.1.1:jar
[INFO] Unpacking /home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-umls2011ab/3.1.1/ctakes-resources-umls2011ab-3.1.1.jar to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/target/unpacked> with includes "" and excludes ""
[INFO]
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[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-temporal ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-temporal ---
[INFO] Compiling 136 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventCoreference.java>:[19,39] error: package org.apache.ctakes.coreference.ae does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[11,48] error: package org.apache.ctakes.coreference.ae.features does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[12,48] error: package org.apache.ctakes.coreference.ae.features does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[13,48] error: package org.apache.ctakes.coreference.ae.features does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[14,48] error: package org.apache.ctakes.coreference.ae.features does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[15,48] error: package org.apache.ctakes.coreference.ae.features does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventTimeRelations.java>:[331,29] [deprecation] createAnnotatorDescription(File) in EventTimeRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventEventRelations.java>:[139,35] [deprecation] createAnnotatorDescription(File) in EventEventRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[351,29] [deprecation] createAnnotatorDescription(File) in EventTimeRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[352,50] [deprecation] createAnnotatorDescription(File) in EventEventRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[353,50] [deprecation] createAnnotatorDescription(File) in EventDischargeTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[354,50] [deprecation] createAnnotatorDescription(File) in EventAdmissionTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventCoreference.java>:[111,15] error: cannot find symbol
[ERROR] symbol: method getCoreferenceDirectory()
location: variable options of type CoreferenceOptions
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventCoreference.java>:[143,4] error: constructor EvaluationOfTemporalRelations_ImplBase in class EvaluationOfTemporalRelations_ImplBase cannot be applied to given types;
[ERROR] required: File,File,File,XMLFormat,File,File,boolean,boolean,ParameterSettings
found: File,File,File,XMLFormat,File,File,File,boolean,boolean,ParameterSettings
reason: actual and formal argument lists differ in length
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventCoreference.java>:[208,25] error: cannot find symbol
[ERROR] symbol: variable CoreferenceChainAnnotator
location: class EvaluationOfEventCoreference
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java>:[180,42] [deprecation] createAnnotatorDescription(File) in DocTimeRelAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java>:[181,50] [deprecation] createAnnotatorDescription(File) in ContextualModalityAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[75,38] [deprecation] createEnsembleDescription(File,String) in BackwardsTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[78,46] [deprecation] createEnsembleDescription(File,String) in ConstituencyBasedTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[81,32] [deprecation] createEnsembleDescription(File,String) in CRFTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[104,38] [deprecation] createEnsembleDescription(File,String) in BackwardsTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[107,46] [deprecation] createEnsembleDescription(File,String) in ConstituencyBasedTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[110,32] [deprecation] createEnsembleDescription(File,String) in CRFTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTimeSpans.java>:[248,23] [deprecation] createAnnotatorDescription(File) in TimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfNEPredicateEventSpans.java>:[77,37] [deprecation] createAnnotatorDescription(File) in NEPredicateEventAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[85,24] error: cannot find symbol
[ERROR] symbol: class DistanceFeatureExtractor
location: class EventCoreferenceAnnotator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[86,24] error: cannot find symbol
[ERROR] symbol: class StringMatchingFeatureExtractor
location: class EventCoreferenceAnnotator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[87,24] error: cannot find symbol
[ERROR] symbol: class TokenFeatureExtractor
location: class EventCoreferenceAnnotator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[88,24] error: cannot find symbol
[ERROR] symbol: class UMLSFeatureExtractor
location: class EventCoreferenceAnnotator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[90,26] error: cannot find symbol
[INFO] 30 errors
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[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [4.155s]
[INFO] Apache cTAKES common type system .................. SUCCESS [15.560s]
[INFO] Apache cTAKES utils ............................... SUCCESS [2.565s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [0.858s]
[INFO] Apache cTAKES core ................................ SUCCESS [9.566s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [0.713s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [5.832s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [0.642s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [2.752s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [3.028s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [11.683s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [4.990s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [1.118s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [1.851s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [2.300s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [0.596s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [5.091s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [1.211s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [2.835s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [2.445s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [5.101s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [3.328s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [27.074s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [14.107s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [3.719s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [0.859s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [6.092s]
[INFO] Apache cTAKES Resources side-effect ............... SUCCESS [0.827s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [10.978s]
[INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [0.864s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [5.879s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [2.553s]
[INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [0.806s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [2.952s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [4.067s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [0.778s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [2.136s]
[INFO] Apache cTAKES YTEX ................................ SUCCESS [12.263s]
[INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [8.503s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [5.397s]
[INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [10.007s]
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SKIPPED
[INFO] Apache cTAKES dictionary lookup fast .............. SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 3:52.958s
[INFO] Finished at: Wed Jul 16 14:25:37 UTC 2014
[INFO] Final Memory: 82M/429M
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[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-temporal: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventCoreference.java>:[19,39] error: package org.apache.ctakes.coreference.ae does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[11,48] error: package org.apache.ctakes.coreference.ae.features does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[12,48] error: package org.apache.ctakes.coreference.ae.features does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[13,48] error: package org.apache.ctakes.coreference.ae.features does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[14,48] error: package org.apache.ctakes.coreference.ae.features does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[15,48] error: package org.apache.ctakes.coreference.ae.features does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventTimeRelations.java>:[331,29] [deprecation] createAnnotatorDescription(File) in EventTimeRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventEventRelations.java>:[139,35] [deprecation] createAnnotatorDescription(File) in EventEventRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[351,29] [deprecation] createAnnotatorDescription(File) in EventTimeRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[352,50] [deprecation] createAnnotatorDescription(File) in EventEventRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[353,50] [deprecation] createAnnotatorDescription(File) in EventDischargeTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[354,50] [deprecation] createAnnotatorDescription(File) in EventAdmissionTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventCoreference.java>:[111,15] error: cannot find symbol
[ERROR] symbol: method getCoreferenceDirectory()
[ERROR] location: variable options of type CoreferenceOptions
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventCoreference.java>:[143,4] error: constructor EvaluationOfTemporalRelations_ImplBase in class EvaluationOfTemporalRelations_ImplBase cannot be applied to given types;
[ERROR] required: File,File,File,XMLFormat,File,File,boolean,boolean,ParameterSettings
[ERROR] found: File,File,File,XMLFormat,File,File,File,boolean,boolean,ParameterSettings
[ERROR] reason: actual and formal argument lists differ in length
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventCoreference.java>:[208,25] error: cannot find symbol
[ERROR] symbol: variable CoreferenceChainAnnotator
[ERROR] location: class EvaluationOfEventCoreference
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java>:[180,42] [deprecation] createAnnotatorDescription(File) in DocTimeRelAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java>:[181,50] [deprecation] createAnnotatorDescription(File) in ContextualModalityAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[75,38] [deprecation] createEnsembleDescription(File,String) in BackwardsTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[78,46] [deprecation] createEnsembleDescription(File,String) in ConstituencyBasedTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[81,32] [deprecation] createEnsembleDescription(File,String) in CRFTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[104,38] [deprecation] createEnsembleDescription(File,String) in BackwardsTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[107,46] [deprecation] createEnsembleDescription(File,String) in ConstituencyBasedTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[110,32] [deprecation] createEnsembleDescription(File,String) in CRFTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTimeSpans.java>:[248,23] [deprecation] createAnnotatorDescription(File) in TimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfNEPredicateEventSpans.java>:[77,37] [deprecation] createAnnotatorDescription(File) in NEPredicateEventAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[85,24] error: cannot find symbol
[ERROR] symbol: class DistanceFeatureExtractor
[ERROR] location: class EventCoreferenceAnnotator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[86,24] error: cannot find symbol
[ERROR] symbol: class StringMatchingFeatureExtractor
[ERROR] location: class EventCoreferenceAnnotator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[87,24] error: cannot find symbol
[ERROR] symbol: class TokenFeatureExtractor
[ERROR] location: class EventCoreferenceAnnotator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[88,24] error: cannot find symbol
[ERROR] symbol: class UMLSFeatureExtractor
[ERROR] location: class EventCoreferenceAnnotator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventCoreferenceAnnotator.java>:[90,26] error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
channel stopped
Build failed in Jenkins: ctakes-trunk-compiletest #515
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/515/changes>
Changes:
[tmill] Added markable to typesystem.
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[INFO]
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[INFO] Building Apache cTAKES ctakes-clinical-pipeline 3.2.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-clinical-pipeline ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-clinical-pipeline ---
Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-clinical-pipeline ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/resources>
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-clinical-pipeline ---
[INFO] Compiling 5 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/target/classes>
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/runtime/BagOfAnnotationsGenerator.java>:[92,55] [unchecked] unchecked cast
[WARNING] required: Class<T>
found: Type
where T is a type-variable:
T extends Annotation declared in class BagOfAnnotationsGenerator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ae/ExtractionPrepAnnotator.java>:[167,17] [unchecked] unchecked call to add(E) as a member of the raw type Set
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-clinical-pipeline ---
Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-clinical-pipeline ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-clinical-pipeline ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-clinical-pipeline ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/test/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-clinical-pipeline ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-clinical-pipeline ---
[INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/target/surefire-reports>
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
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[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Temporal Information Extraction 3.2.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-temporal ---
[INFO]
[INFO] --- maven-dependency-plugin:2.6:unpack (unpack) @ ctakes-temporal ---
[INFO] Configured Artifact: net.sourceforge.ctakesresources:ctakes-resources-umls2011ab:3.1.1:jar
[INFO] Unpacking /home/jenkins/jenkins-slave/maven-repositories/1/net/sourceforge/ctakesresources/ctakes-resources-umls2011ab/3.1.1/ctakes-resources-umls2011ab-3.1.1.jar to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/target/unpacked> with includes "" and excludes ""
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-temporal ---
Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-temporal ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-temporal ---
[INFO] Compiling 134 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[17,67] error: package org.apache.ctakes.temporal.eval.EvaluationOfEventCoreference does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventTimeRelations.java>:[331,29] [deprecation] createAnnotatorDescription(File) in EventTimeRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventEventRelations.java>:[139,35] [deprecation] createAnnotatorDescription(File) in EventEventRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[351,29] [deprecation] createAnnotatorDescription(File) in EventTimeRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[352,50] [deprecation] createAnnotatorDescription(File) in EventEventRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[353,50] [deprecation] createAnnotatorDescription(File) in EventDischargeTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[354,50] [deprecation] createAnnotatorDescription(File) in EventAdmissionTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[71,74] error: cannot find symbol
[ERROR] symbol: class ParagraphAnnotator
location: class CoreferenceLinkDistanceAnalyzer
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java>:[180,42] [deprecation] createAnnotatorDescription(File) in DocTimeRelAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java>:[181,50] [deprecation] createAnnotatorDescription(File) in ContextualModalityAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[75,38] [deprecation] createEnsembleDescription(File,String) in BackwardsTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[78,46] [deprecation] createEnsembleDescription(File,String) in ConstituencyBasedTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[81,32] [deprecation] createEnsembleDescription(File,String) in CRFTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[104,38] [deprecation] createEnsembleDescription(File,String) in BackwardsTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[107,46] [deprecation] createEnsembleDescription(File,String) in ConstituencyBasedTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[110,32] [deprecation] createEnsembleDescription(File,String) in CRFTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTimeSpans.java>:[248,23] [deprecation] createAnnotatorDescription(File) in TimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfNEPredicateEventSpans.java>:[77,37] [deprecation] createAnnotatorDescription(File) in NEPredicateEventAnnotator has been deprecated
[INFO] 18 errors
[INFO] -------------------------------------------------------------
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [25.931s]
[INFO] Apache cTAKES common type system .................. SUCCESS [12.139s]
[INFO] Apache cTAKES utils ............................... SUCCESS [5.273s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.614s]
[INFO] Apache cTAKES core ................................ SUCCESS [17.175s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [2.348s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [5.617s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [2.591s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [5.698s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [5.125s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [11.587s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [5.381s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [3.129s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [1.003s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [3.316s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [2.660s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [6.335s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [2.809s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [4.723s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [2.534s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [2.500s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [5.617s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [32.847s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [11.178s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [5.356s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [2.498s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [6.043s]
[INFO] Apache cTAKES Resources side-effect ............... SUCCESS [2.708s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [8.121s]
[INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [2.584s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [8.538s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [2.801s]
[INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [2.948s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [3.354s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [6.477s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [2.606s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [2.992s]
[INFO] Apache cTAKES YTEX ................................ SUCCESS [8.884s]
[INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [8.782s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [5.778s]
[INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [12.637s]
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SKIPPED
[INFO] Apache cTAKES dictionary lookup fast .............. SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 5:07.374s
[INFO] Finished at: Wed Jul 16 14:06:35 UTC 2014
[INFO] Final Memory: 80M/257M
[INFO] ------------------------------------------------------------------------
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[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-temporal: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[17,67] error: package org.apache.ctakes.temporal.eval.EvaluationOfEventCoreference does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventTimeRelations.java>:[331,29] [deprecation] createAnnotatorDescription(File) in EventTimeRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventEventRelations.java>:[139,35] [deprecation] createAnnotatorDescription(File) in EventEventRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[351,29] [deprecation] createAnnotatorDescription(File) in EventTimeRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[352,50] [deprecation] createAnnotatorDescription(File) in EventEventRelationAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[353,50] [deprecation] createAnnotatorDescription(File) in EventDischargeTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations.java>:[354,50] [deprecation] createAnnotatorDescription(File) in EventAdmissionTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CoreferenceLinkDistanceAnalyzer.java>:[71,74] error: cannot find symbol
[ERROR] symbol: class ParagraphAnnotator
[ERROR] location: class CoreferenceLinkDistanceAnalyzer
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java>:[180,42] [deprecation] createAnnotatorDescription(File) in DocTimeRelAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java>:[181,50] [deprecation] createAnnotatorDescription(File) in ContextualModalityAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[75,38] [deprecation] createEnsembleDescription(File,String) in BackwardsTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[78,46] [deprecation] createEnsembleDescription(File,String) in ConstituencyBasedTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[81,32] [deprecation] createEnsembleDescription(File,String) in CRFTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[104,38] [deprecation] createEnsembleDescription(File,String) in BackwardsTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[107,46] [deprecation] createEnsembleDescription(File,String) in ConstituencyBasedTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[110,32] [deprecation] createEnsembleDescription(File,String) in CRFTimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTimeSpans.java>:[248,23] [deprecation] createAnnotatorDescription(File) in TimeAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfNEPredicateEventSpans.java>:[77,37] [deprecation] createAnnotatorDescription(File) in NEPredicateEventAnnotator has been deprecated
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org
channel stopped