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Posted to reviews@spark.apache.org by actuaryzhang <gi...@git.apache.org> on 2017/02/20 19:48:41 UTC
[GitHub] spark pull request #17005: [SPARK-14659][ML] RFormula supports setting base ...
GitHub user actuaryzhang opened a pull request:
https://github.com/apache/spark/pull/17005
[SPARK-14659][ML] RFormula supports setting base level both by frequency and alphabetically
## What changes were proposed in this pull request?
Current RFormula drops the least frequent level for a string feature column because this is the default behavior in StringIndexer. Two issues with this:
- In practical applications, there is often need to set the most frequent value as the reference level for better interpretability.
- Other software such as R sets the first alphabetical value as the reference level. It's desirable to have such an option in order to compare results.
This PR adds more options to order string values in StringIndexer and RFormula. We add a parameter `stringOrderType` to control how string is ordered which supports four options:
- "freq_desc": sort in descending order by frequency of values. In StringIndexer, the most frequent value is indexed 0, and in RFormula the least frequent value is the reference level. This is the default and consistent with current behavior.
- "freq_asc": sort in ascending order by frequency of values. In StringIndexer, the least frequent value is indexed 0, and in RFormula the most frequent value is the reference level.
- "alphabet_desc": sort in alphabetically descending order. This sets the first alphabetical value as reference level in RFormula, which is R's default behavior.
- "alphabet_asc": sort in alphabetically ascending order.
## How was this patch tested?
New tests added for StringIndexer and RFormula.
You can merge this pull request into a Git repository by running:
$ git pull https://github.com/actuaryzhang/spark baseLevel
Alternatively you can review and apply these changes as the patch at:
https://github.com/apache/spark/pull/17005.patch
To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:
This closes #17005
----
commit f80f6ebacee2d9b9c7b8b2635f490340754833ee
Author: actuaryzhang <ac...@gmail.com>
Date: 2017-02-20T09:11:47Z
add orderType in stringIndexer
commit 352f558ff8671c0382bd848d2599f2ae9b116c31
Author: actuaryzhang <ac...@gmail.com>
Date: 2017-02-20T19:10:59Z
allow RFormula to take stringOrderType and add tests
commit a19486d42f56b5cd458e283bf521ed5f86613ca0
Author: actuaryzhang <ac...@gmail.com>
Date: 2017-02-20T19:23:35Z
add doc for R formula
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by AmplabJenkins <gi...@git.apache.org>.
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/17005
**[Test build #73203 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/73203/testReport)** for PR 17005 at commit [`7cef3bc`](https://github.com/apache/spark/commit/7cef3bc6f200457b782dedd1247ed8bf81beb902).
* This patch passes all tests.
* This patch merges cleanly.
* This patch adds no public classes.
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/17005
**[Test build #73186 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/73186/testReport)** for PR 17005 at commit [`2ca7b84`](https://github.com/apache/spark/commit/2ca7b84d3bc0610703341404887b7a5da522c555).
* This patch **fails to build**.
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by felixcheung <gi...@git.apache.org>.
Github user felixcheung commented on the issue:
https://github.com/apache/spark/pull/17005
thanks! merged to master and branch-2.1
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by actuaryzhang <gi...@git.apache.org>.
Github user actuaryzhang commented on the issue:
https://github.com/apache/spark/pull/17005
@HyukjinKwon Thanks. I'll try retesting this.
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by SparkQA <gi...@git.apache.org>.
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https://github.com/apache/spark/pull/17005
**[Test build #73186 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/73186/testReport)** for PR 17005 at commit [`2ca7b84`](https://github.com/apache/spark/commit/2ca7b84d3bc0610703341404887b7a5da522c555).
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by SparkQA <gi...@git.apache.org>.
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https://github.com/apache/spark/pull/17005
**[Test build #73187 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/73187/testReport)** for PR 17005 at commit [`987390a`](https://github.com/apache/spark/commit/987390a7a92f09e39b48db6a1430ea3e7d7d193e).
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by actuaryzhang <gi...@git.apache.org>.
Github user actuaryzhang commented on the issue:
https://github.com/apache/spark/pull/17005
Cannot figure out what's exactly causing the test to fail. Error message is not informative. Any help please?
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by SparkQA <gi...@git.apache.org>.
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https://github.com/apache/spark/pull/17005
**[Test build #73183 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/73183/testReport)** for PR 17005 at commit [`3612d1a`](https://github.com/apache/spark/commit/3612d1adbf1ade5902a5964a74c4a8ee4ce9db4f).
* This patch **fails MiMa tests**.
* This patch merges cleanly.
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
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**[Test build #73203 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/73203/testReport)** for PR 17005 at commit [`7cef3bc`](https://github.com/apache/spark/commit/7cef3bc6f200457b782dedd1247ed8bf81beb902).
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
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**[Test build #73182 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/73182/testReport)** for PR 17005 at commit [`a19486d`](https://github.com/apache/spark/commit/a19486d42f56b5cd458e283bf521ed5f86613ca0).
* This patch **fails Scala style tests**.
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[GitHub] spark pull request #17005: [SPARK-14659][ML] RFormula supports setting base ...
Posted by actuaryzhang <gi...@git.apache.org>.
Github user actuaryzhang closed the pull request at:
https://github.com/apache/spark/pull/17005
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/17005
**[Test build #73184 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/73184/testReport)** for PR 17005 at commit [`cc48b12`](https://github.com/apache/spark/commit/cc48b125c0dab7bb0d72ead8d4f56a035f545ac0).
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by actuaryzhang <gi...@git.apache.org>.
Github user actuaryzhang commented on the issue:
https://github.com/apache/spark/pull/17005
@srowen @jkbradley @felixcheung @sethah @yanboliang
One question is: is it better to move the `HasStringOrderType` trait to the shared params? This is only used by StringIndexer and RFormula now. Please advise. Thanks.
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
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**[Test build #73185 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/73185/testReport)** for PR 17005 at commit [`c8ffaea`](https://github.com/apache/spark/commit/c8ffaeaaed7fc195be4a42fe5411b8c5ae707668).
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by HyukjinKwon <gi...@git.apache.org>.
Github user HyukjinKwon commented on the issue:
https://github.com/apache/spark/pull/17005
(It seems it was due to https://github.com/apache/spark/commit/73f065569d352081b7d64c254af70ce996860c53.)
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by AmplabJenkins <gi...@git.apache.org>.
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/17005
**[Test build #73184 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/73184/testReport)** for PR 17005 at commit [`cc48b12`](https://github.com/apache/spark/commit/cc48b125c0dab7bb0d72ead8d4f56a035f545ac0).
* This patch **fails Scala style tests**.
* This patch merges cleanly.
* This patch adds no public classes.
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
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https://github.com/apache/spark/pull/17005
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/17005
**[Test build #73182 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/73182/testReport)** for PR 17005 at commit [`a19486d`](https://github.com/apache/spark/commit/a19486d42f56b5cd458e283bf521ed5f86613ca0).
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:
https://github.com/apache/spark/pull/17005
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/17005
**[Test build #73185 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/73185/testReport)** for PR 17005 at commit [`c8ffaea`](https://github.com/apache/spark/commit/c8ffaeaaed7fc195be4a42fe5411b8c5ae707668).
* This patch **fails to build**.
* This patch merges cleanly.
* This patch adds no public classes.
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:
https://github.com/apache/spark/pull/17005
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:
https://github.com/apache/spark/pull/17005
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/17005
**[Test build #73183 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/73183/testReport)** for PR 17005 at commit [`3612d1a`](https://github.com/apache/spark/commit/3612d1adbf1ade5902a5964a74c4a8ee4ce9db4f).
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:
https://github.com/apache/spark/pull/17005
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/17005
**[Test build #73189 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/73189/testReport)** for PR 17005 at commit [`817e83e`](https://github.com/apache/spark/commit/817e83e5ec1013536630c5b45031fac4e8562c27).
* This patch **fails to build**.
* This patch merges cleanly.
* This patch adds no public classes.
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/17005
**[Test build #73187 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/73187/testReport)** for PR 17005 at commit [`987390a`](https://github.com/apache/spark/commit/987390a7a92f09e39b48db6a1430ea3e7d7d193e).
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[GitHub] spark issue #17005: [SPARK-14659][ML] RFormula supports setting base level b...
Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:
https://github.com/apache/spark/pull/17005
Merged build finished. Test FAILed.
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