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Posted to dev@taverna.apache.org by "Stian Soiland-Reyes (JIRA)" <ji...@apache.org> on 2016/04/27 13:11:12 UTC
[jira] [Updated] (TAVERNA-964) Command line should not read
inputfiles to memory
[ https://issues.apache.org/jira/browse/TAVERNA-964?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Stian Soiland-Reyes updated TAVERNA-964:
----------------------------------------
Description:
As reported by [Daniele Tartarini to dev@taverna|http://mail-archives.apache.org/mod_mbox/taverna-dev/201604.mbox/%3CCAA8bF%2BVdD83A%3DWUMhdaLkip3Xz-impF3jTVF_0Hd395E9zj4yw%40mail.gmail.com%3E], the Taverna Command Line does not pass on "-inputfile" parameters as File (or URL) instances, but rather they are read into memory and then registered fresh.
In conjuction with the Tool activity using Files this mean the file is copied twice.
https://github.com/apache/incubator-taverna-commandline/blob/master/taverna-commandline-common/src/main/java/org/apache/taverna/commandline/data/InputsHandler.java#L168
setValue() in InputsHandler supports File and URL forwarded on to
DataBundles.setReference() - so this should be used instead.
was:
As reported by [Daniele Tartarini to dev@taverna|http://mail-archives.apache.org/mod_mbox/taverna-dev/201604.mbox/%3CCAA8bF%2BVdD83A%3DWUMhdaLkip3Xz-impF3jTVF_0Hd395E9zj4yw%40mail.gmail.com%3E], the Taverna Command Line does not pass on "-inputfile" parameters as File (or URL) instances, but rather they are read into memory and then registered fresh.
https://github.com/apache/incubator-taverna-commandline/blob/master/taverna-commandline-common/src/main/java/org/apache/taverna/commandline/data/InputsHandler.java#L168
setValue() in InputsHandler supports File and URL forwarded on to
DataBundles.setReference() - so this should be used instead.
> Command line should not read inputfiles to memory
> -------------------------------------------------
>
> Key: TAVERNA-964
> URL: https://issues.apache.org/jira/browse/TAVERNA-964
> Project: Apache Taverna
> Issue Type: Bug
> Components: Taverna Commandline
> Reporter: Stian Soiland-Reyes
>
> As reported by [Daniele Tartarini to dev@taverna|http://mail-archives.apache.org/mod_mbox/taverna-dev/201604.mbox/%3CCAA8bF%2BVdD83A%3DWUMhdaLkip3Xz-impF3jTVF_0Hd395E9zj4yw%40mail.gmail.com%3E], the Taverna Command Line does not pass on "-inputfile" parameters as File (or URL) instances, but rather they are read into memory and then registered fresh.
> In conjuction with the Tool activity using Files this mean the file is copied twice.
> https://github.com/apache/incubator-taverna-commandline/blob/master/taverna-commandline-common/src/main/java/org/apache/taverna/commandline/data/InputsHandler.java#L168
> setValue() in InputsHandler supports File and URL forwarded on to
> DataBundles.setReference() - so this should be used instead.
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