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Posted to builds@beam.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2020/04/29 18:08:09 UTC
Build failed in Jenkins: beam_PostCommit_Python_MongoDBIO_IT #2860
See <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/2860/display/redirect?page=changes>
Changes:
[robertwb] [9577] Attempt to stage artifacts via new API on Java.
[robertwb] [BEAM-9802] Customization of automatically started services.
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Installing collected packages: crcmod, dill, pytz, fastavro, urllib3, idna, certifi, chardet, requests, docopt, hdfs, httplib2, pbr, mock, numpy, pymongo, pyasn1, rsa, pyasn1-modules, oauth2client, pyparsing, pydot, python-dateutil, typing-extensions, typing, pyarrow, avro-python3, freezegun, nose, nose-xunitmp, pandas, parameterized, pyhamcrest, pyyaml, requests-mock, tenacity, packaging, pathlib2, more-itertools, wcwidth, atomicwrites, attrs, pytest, pytest-forked, apipkg, execnet, pytest-xdist, pytest-timeout, apache-beam
> Task :sdks:python:test-suites:direct:py2:mongodbioIT
Using default tag: latest
latest: Pulling from library/mongo
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Status: Image is up to date for mongo:latest
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DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
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Installing collected packages: crcmod, dill, pytz, fastavro, docopt, certifi, idna, chardet, urllib3, requests, hdfs, httplib2, pbr, funcsigs, mock, numpy, pymongo, pyasn1, rsa, pyasn1-modules, oauth2client, pyparsing, pydot, python-dateutil, typing-extensions, avro, pyvcf, pyarrow, freezegun, nose, nose-xunitmp, pandas, parameterized, pyhamcrest, pyyaml, requests-mock, monotonic, tenacity, atomicwrites, packaging, attrs, wcwidth, more-itertools, pytest, pytest-forked, apipkg, execnet, pytest-xdist, pytest-timeout, apache-beam
Running setup.py develop for apache-beam
> Task :sdks:python:test-suites:direct:py35:mongodbioIT
Running setup.py develop for apache-beam
Successfully installed apache-beam apipkg-1.5 atomicwrites-1.4.0 attrs-19.3.0 avro-python3-1.9.2.1 certifi-2020.4.5.1 chardet-3.0.4 crcmod-1.7 dill-0.3.1.1 docopt-0.6.2 execnet-1.7.1 fastavro-0.23.3 freezegun-0.3.15 hdfs-2.5.8 httplib2-0.15.0 idna-2.9 mock-2.0.0 more-itertools-8.2.0 nose-1.3.7 nose-xunitmp-0.4.1 numpy-1.18.3 oauth2client-3.0.0 packaging-20.3 pandas-0.24.2 parameterized-0.7.4 pathlib2-2.3.5 pbr-5.4.5 pyarrow-0.16.0 pyasn1-0.4.8 pyasn1-modules-0.2.8 pydot-1.4.1 pyhamcrest-1.10.1 pymongo-3.10.1 pyparsing-2.4.7 pytest-4.6.9 pytest-forked-1.1.3 pytest-timeout-1.3.4 pytest-xdist-1.31.0 python-dateutil-2.8.1 pytz-2020.1 pyyaml-5.3.1 requests-2.23.0 requests-mock-1.7.0 rsa-4.0 tenacity-5.1.5 typing-3.7.4.1 typing-extensions-3.7.4.2 urllib3-1.25.9 wcwidth-0.1.9
Traceback (most recent call last):
File "/usr/lib/python3.5/runpy.py", line 174, in _run_module_as_main
mod_name, mod_spec, code = _get_module_details(mod_name, _Error)
File "/usr/lib/python3.5/runpy.py", line 109, in _get_module_details
__import__(pkg_name)
File "<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/__init__.py",> line 95, in <module>
from apache_beam import coders
File "<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/coders/__init__.py",> line 19, in <module>
from apache_beam.coders.coders import *
File "<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/coders/coders.py",> line 46, in <module>
from apache_beam.coders import coder_impl
File "<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/coders/coder_impl.py",> line 61, in <module>
from apache_beam.utils import windowed_value
File "<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/utils/windowed_value.py",> line 40, in <module>
from apache_beam.utils.timestamp import MAX_TIMESTAMP
File "<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/utils/timestamp.py",> line 41, in <module>
from apache_beam.portability import common_urns
File "<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/common_urns.py",> line 24, in <module>
from apache_beam.portability.api.beam_runner_api_pb2_urns import BeamConstants
File "<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_runner_api_pb2_urns.py",> line 2, in <module>
from . import metrics_pb2
File "<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/metrics_pb2.py",> line 16, in <module>
import beam_runner_api_pb2 as beam__runner__api__pb2
ImportError: No module named 'beam_runner_api_pb2'
> Task :sdks:python:test-suites:direct:py35:mongodbioIT FAILED
> Task :sdks:python:test-suites:direct:py2:mongodbioIT
Successfully installed apache-beam apipkg-1.5 atomicwrites-1.4.0 attrs-19.3.0 avro-1.9.2 certifi-2020.4.5.1 chardet-3.0.4 crcmod-1.7 dill-0.3.1.1 docopt-0.6.2 execnet-1.7.1 fastavro-0.23.3 freezegun-0.3.15 funcsigs-1.0.2 hdfs-2.5.8 httplib2-0.15.0 idna-2.9 mock-2.0.0 monotonic-1.5 more-itertools-5.0.0 nose-1.3.7 nose-xunitmp-0.4.1 numpy-1.16.6 oauth2client-3.0.0 packaging-20.3 pandas-0.24.2 parameterized-0.7.4 pbr-5.4.5 pyarrow-0.16.0 pyasn1-0.4.8 pyasn1-modules-0.2.8 pydot-1.4.1 pyhamcrest-1.10.1 pymongo-3.10.1 pyparsing-2.4.7 pytest-4.6.9 pytest-forked-1.1.3 pytest-timeout-1.3.4 pytest-xdist-1.31.0 python-dateutil-2.8.1 pytz-2020.1 pyvcf-0.6.8 pyyaml-5.3.1 requests-2.23.0 requests-mock-1.7.0 rsa-4.0 tenacity-5.1.5 typing-extensions-3.7.4.2 urllib3-1.25.9 wcwidth-0.1.9
<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/__init__.py>:82: UserWarning: You are using Apache Beam with Python 2. New releases of Apache Beam will soon support Python 3 only.
'You are using Apache Beam with Python 2. '
INFO:root:Missing pipeline option (runner). Executing pipeline using the default runner: DirectRunner.
INFO:__main__:Writing 100000 documents to mongodb
<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:82: FutureWarning: WriteToMongoDB is experimental.
known_args.batch_size))
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function annotate_downstream_side_inputs at 0x7fedc2702de8> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function fix_side_input_pcoll_coders at 0x7fedc2702ed8> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function lift_combiners at 0x7fedc2702f50> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function expand_sdf at 0x7fedc2701050> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function expand_gbk at 0x7fedc27010c8> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function sink_flattens at 0x7fedc27011b8> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function greedily_fuse at 0x7fedc2701230> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function read_to_impulse at 0x7fedc27012a8> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function impulse_to_input at 0x7fedc2701320> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function sort_stages at 0x7fedc2701500> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function setup_timer_mapping at 0x7fedc2701488> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function populate_data_channel_coders at 0x7fedc2701578> ====================
INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100
INFO:apache_beam.runners.portability.fn_api_runner.worker_handlers:Created Worker handler <apache_beam.runners.portability.fn_api_runner.worker_handlers.EmbeddedWorkerHandler object at 0x7fedc26d0110> for environment urn: "beam:env:embedded_python:v1"
INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (ref_AppliedPTransform_Create/Impulse_3)+((ref_AppliedPTransform_Create/FlatMap(<lambda at core.py:2714>)_4)+((ref_AppliedPTransform_Create/Map(decode)_6)+((ref_AppliedPTransform_Create documents_7)+((ref_AppliedPTransform_WriteToMongoDB/ParDo(_GenerateObjectIdFn)_9)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/AddRandomKeys_11)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/Map(reify_timestamps)_13)+(WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Write)))))))
INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Read)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/FlatMap(restore_timestamps)_18)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/RemoveRandomKeys_19)+(ref_AppliedPTransform_WriteToMongoDB/ParDo(_WriteMongoFn)_20)))
INFO:__main__:Writing 100000 documents to mongodb finished in 38.441 seconds
INFO:root:Missing pipeline option (runner). Executing pipeline using the default runner: DirectRunner.
INFO:__main__:Reading from mongodb beam_mongodbio_it_db:integration_test_1588183638
<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:101: FutureWarning: ReadFromMongoDB is experimental.
| 'Combine' >> beam.CombineGlobally(sum))
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function annotate_downstream_side_inputs at 0x7fedc2702de8> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function fix_side_input_pcoll_coders at 0x7fedc2702ed8> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function lift_combiners at 0x7fedc2702f50> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function expand_sdf at 0x7fedc2701050> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function expand_gbk at 0x7fedc27010c8> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function sink_flattens at 0x7fedc27011b8> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function greedily_fuse at 0x7fedc2701230> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function read_to_impulse at 0x7fedc27012a8> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function impulse_to_input at 0x7fedc2701320> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function sort_stages at 0x7fedc2701500> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function setup_timer_mapping at 0x7fedc2701488> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function populate_data_channel_coders at 0x7fedc2701578> ====================
INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100
INFO:apache_beam.runners.portability.fn_api_runner.worker_handlers:Created Worker handler <apache_beam.runners.portability.fn_api_runner.worker_handlers.EmbeddedWorkerHandler object at 0x7fedbf686a50> for environment urn: "beam:env:embedded_python:v1"
INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running ((ref_AppliedPTransform_ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/Impulse_5)+(ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/PairWithRestriction))+((ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/SplitAndSizeRestriction)+(ref_PCollection_PCollection_1_split/Write))
INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (ref_PCollection_PCollection_1_split/Read)+(((ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/Process)+((ref_AppliedPTransform_Map_7)+((ref_AppliedPTransform_Combine/KeyWithVoid_9)+(Combine/CombinePerKey/Precombine))))+(Combine/CombinePerKey/Group/Write))
INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running ((Combine/CombinePerKey/Group/Read)+(Combine/CombinePerKey/Merge))+((Combine/CombinePerKey/ExtractOutputs)+((ref_AppliedPTransform_Combine/UnKey_17)+(ref_PCollection_PCollection_9/Write)))
INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running ((ref_AppliedPTransform_Combine/DoOnce/Impulse_19)+((ref_AppliedPTransform_Combine/DoOnce/FlatMap(<lambda at core.py:2714>)_20)+((ref_AppliedPTransform_Combine/DoOnce/Map(decode)_22)+((ref_AppliedPTransform_Combine/InjectDefault_23)+((ref_AppliedPTransform_assert_that/WindowInto(WindowIntoFn)_30)+((ref_AppliedPTransform_assert_that/ToVoidKey_31)+(ref_AppliedPTransform_assert_that/Group/pair_with_1_34)))))))+((assert_that/Group/Flatten/Transcode/1)+(assert_that/Group/Flatten/Write/1))
INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (ref_AppliedPTransform_assert_that/Create/Impulse_26)+((ref_AppliedPTransform_assert_that/Create/FlatMap(<lambda at core.py:2714>)_27)+((ref_AppliedPTransform_assert_that/Create/Map(decode)_29)+((ref_AppliedPTransform_assert_that/Group/pair_with_0_33)+((assert_that/Group/Flatten/Transcode/0)+(assert_that/Group/Flatten/Write/0)))))
INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (assert_that/Group/Flatten/Read)+(assert_that/Group/GroupByKey/Write)
INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running ((assert_that/Group/GroupByKey/Read)+(ref_AppliedPTransform_assert_that/Group/Map(_merge_tagged_vals_under_key)_40))+((ref_AppliedPTransform_assert_that/Unkey_41)+(ref_AppliedPTransform_assert_that/Match_42))
INFO:__main__:Read 100000 documents from mongodb finished in 4.922 seconds
mongoioit27548
mongoioit27548
FAILURE: Build failed with an exception.
* Where:
Build file '<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/test-suites/direct/py35/build.gradle'> line: 78
* What went wrong:
Execution failed for task ':sdks:python:test-suites:direct:py35:mongodbioIT'.
> Process 'command 'sh'' finished with non-zero exit value 1
* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights.
* Get more help at https://help.gradle.org
Deprecated Gradle features were used in this build, making it incompatible with Gradle 6.0.
Use '--warning-mode all' to show the individual deprecation warnings.
See https://docs.gradle.org/5.2.1/userguide/command_line_interface.html#sec:command_line_warnings
BUILD FAILED in 2m 35s
4 actionable tasks: 4 executed
Publishing build scan...
https://gradle.com/s/mi6itrkzculxa
Build step 'Invoke Gradle script' changed build result to FAILURE
Build step 'Invoke Gradle script' marked build as failure
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