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Posted to commits@taverna.apache.org by st...@apache.org on 2016/06/22 16:39:25 UTC
[06/11] incubator-taverna-common-activities git commit: format is
added to customtool1.cwl
format is added to customtool1.cwl
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/commit/a76e71b5
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/tree/a76e71b5
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/diff/a76e71b5
Branch: refs/heads/cwl-browse
Commit: a76e71b57b82763bf5269b01583f1ccb44029fcc
Parents: 2d28ba8
Author: ThilinaManamgoda <ma...@gmail.com>
Authored: Mon Jun 20 03:55:30 2016 +0530
Committer: ThilinaManamgoda <ma...@gmail.com>
Committed: Mon Jun 20 03:55:30 2016 +0530
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taverna-cwl-activity-ui/CWLFiles/customtool1.cwl | 4 ++++
.../java/org/apache/taverna/cwl/ui/serviceprovider/Testing.java | 2 --
2 files changed, 4 insertions(+), 2 deletions(-)
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http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/a76e71b5/taverna-cwl-activity-ui/CWLFiles/customtool1.cwl
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diff --git a/taverna-cwl-activity-ui/CWLFiles/customtool1.cwl b/taverna-cwl-activity-ui/CWLFiles/customtool1.cwl
index 13692d5..20939e7 100644
--- a/taverna-cwl-activity-ui/CWLFiles/customtool1.cwl
+++ b/taverna-cwl-activity-ui/CWLFiles/customtool1.cwl
@@ -21,11 +21,15 @@
class: CommandLineTool
cwlVersion: cwl:draft-3
+$namespaces:
+ edam: http://edamontology.org/
+
inputs:
- id: input_1
type: int
label: input 1 testing label
description: this is a short description of input 1
+ format: edam:format_2323
- id: input_2
type:
http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/a76e71b5/taverna-cwl-activity-ui/src/main/java/org/apache/taverna/cwl/ui/serviceprovider/Testing.java
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diff --git a/taverna-cwl-activity-ui/src/main/java/org/apache/taverna/cwl/ui/serviceprovider/Testing.java b/taverna-cwl-activity-ui/src/main/java/org/apache/taverna/cwl/ui/serviceprovider/Testing.java
index c509d11..6113aa8 100644
--- a/taverna-cwl-activity-ui/src/main/java/org/apache/taverna/cwl/ui/serviceprovider/Testing.java
+++ b/taverna-cwl-activity-ui/src/main/java/org/apache/taverna/cwl/ui/serviceprovider/Testing.java
@@ -84,8 +84,6 @@ public static void main(String[] args) {
// System.out.println(file.getName());
Map cwlFile = (Map) cwlReader.load(new FileInputStream(file));
//processInputs(cwlFile);
- if(file.getName().equals("bedtool-genomecov.cwl"))System.out.println(((String)(( ArrayList<Map>)cwlFile.get(INPUTS)).get(0).get("format")).split(":")[0]);
- if(file.getName().equals("bedtool-genomecov.cwl"))System.out.println(((Map)(cwlFile.get("$namespaces"))).get("edam"));
}catch(Exception e){
System.out.println(e.getMessage());
}