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Posted to commits@taverna.apache.org by re...@apache.org on 2015/03/30 15:33:27 UTC

[1/2] incubator-taverna-workbench git commit: some biocatalogue cleanings

Repository: incubator-taverna-workbench
Updated Branches:
  refs/heads/master 13fd16b27 -> a87b85d81


some biocatalogue cleanings

Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/commit/95d4269b
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/tree/95d4269b
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/diff/95d4269b

Branch: refs/heads/master
Commit: 95d4269b5a099c11e67321692304d6436274bb69
Parents: 13fd16b
Author: Dmitry Repchevsky <re...@list.ru>
Authored: Mon Mar 30 15:30:46 2015 +0200
Committer: Dmitry Repchevsky <re...@list.ru>
Committed: Mon Mar 30 15:30:46 2015 +0200

----------------------------------------------------------------------
 taverna-perspective-biocatalogue/pom.xml        | 24 ++++++++++++++++++++
 .../model/HTTPMethodInterpreter.java            |  2 +-
 .../biocatalogue/model/ResourceManager.java     |  4 ++--
 .../biocatalogue/integration/Integration.java   | 22 +++++++++---------
 .../config/BioCataloguePluginConfiguration.java |  2 +-
 ...aloguePluginInputPortContextViewFactory.java |  2 +-
 ...loguePluginOutputPortContextViewFactory.java |  2 +-
 ...aloguePluginProcessorContextViewFactory.java |  2 +-
 .../ProcessorInputPortView.java                 |  2 +-
 .../ProcessorOutputPortView.java                |  2 +-
 .../contextual_views/ProcessorView.java         |  2 +-
 .../BioCatalogueWSDLActivityHealthCheck.java    |  4 ++--
 ...ueWSDLActivityHealthCheckVisitExplainer.java |  6 ++---
 .../BioCatalogueWSDLActivityHealthChecker.java  | 10 ++++----
 .../ServiceMonitoringStatusInterpreter.java     |  4 ++--
 .../BioCatalogueContextualMenuSection.java      |  6 ++---
 .../integration/menus/MenuActionInputPort.java  |  2 +-
 .../menus/MenuActionProcessorHealthCheck.java   |  2 +-
 .../BioCatalogueRESTServiceProvider.java        |  2 +-
 .../BioCatalogueServiceProvider.java            |  6 ++---
 ...ioCatalogueWSDLOperationServiceProvider.java |  8 +++----
 .../RESTFromBioCatalogueServiceDescription.java | 12 +++++-----
 ...ationFromBioCatalogueServiceDescription.java |  6 ++---
 23 files changed, 79 insertions(+), 55 deletions(-)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/pom.xml
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/pom.xml b/taverna-perspective-biocatalogue/pom.xml
index 8f85524..512218c 100644
--- a/taverna-perspective-biocatalogue/pom.xml
+++ b/taverna-perspective-biocatalogue/pom.xml
@@ -147,6 +147,30 @@
 			<artifactId>gson</artifactId>
 			<version>${gson.version}</version>
 		</dependency>
+	 <dependency>
+	  <groupId>org.apache.taverna.commonactivities</groupId>
+	  <artifactId>taverna-rest-activity</artifactId>
+	  <version>2.1.0-incubating-SNAPSHOT</version>
+	  <type>jar</type>
+	 </dependency>
+	 <dependency>
+	  <groupId>org.apache.taverna.commonactivities</groupId>
+	  <artifactId>taverna-wsdl-activity</artifactId>
+	  <version>2.1.0-incubating-SNAPSHOT</version>
+	  <type>jar</type>
+	 </dependency>
+	 <dependency>
+	  <groupId>org.apache.taverna.workbench</groupId>
+	  <artifactId>taverna-activity-palette-impl</artifactId>
+	  <version>3.1.0-incubating-SNAPSHOT</version>
+	  <type>jar</type>
+	 </dependency>
+	 <dependency>
+	  <groupId>org.apache.taverna.ui-activities</groupId>
+	  <artifactId>taverna-rest-activity-ui</artifactId>
+	  <version>3.1.0-incubating-SNAPSHOT</version>
+	  <type>jar</type>
+	 </dependency>
 	</dependencies>
 
 	<build>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/biocatalogue/model/HTTPMethodInterpreter.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/biocatalogue/model/HTTPMethodInterpreter.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/biocatalogue/model/HTTPMethodInterpreter.java
index b638398..95069ea 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/biocatalogue/model/HTTPMethodInterpreter.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/biocatalogue/model/HTTPMethodInterpreter.java
@@ -3,7 +3,7 @@ package org.apache.taverna.biocatalogue.model;
 import org.apache.log4j.Logger;
 import org.biocatalogue.x2009.xml.rest.HttpVerb;
 
-import net.sf.taverna.t2.activities.rest.RESTActivity.HTTP_METHOD;
+import org.apache.taverna.activities.rest.RESTActivity.HTTP_METHOD;
 
 /**
  * Very simple class for translating HTTP method values returned

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/biocatalogue/model/ResourceManager.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/biocatalogue/model/ResourceManager.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/biocatalogue/model/ResourceManager.java
index 298b061..b3fd79e 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/biocatalogue/model/ResourceManager.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/biocatalogue/model/ResourceManager.java
@@ -13,8 +13,8 @@ import java.util.HashMap;
 import javax.swing.Icon;
 import javax.swing.ImageIcon;
 
-import net.sf.taverna.t2.activities.rest.ui.servicedescription.RESTActivityIcon;
-import net.sf.taverna.t2.activities.wsdl.servicedescriptions.WSDLActivityIcon;
+import org.apache.taverna.activities.rest.ui.servicedescription.RESTActivityIcon;
+import org.apache.taverna.activities.wsdl.servicedescriptions.WSDLActivityIcon;
 import org.apache.taverna.ui.perspectives.biocatalogue.BioCataloguePerspective;
 
 /**

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/Integration.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/Integration.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/Integration.java
index 81b0528..1b32558 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/Integration.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/Integration.java
@@ -30,10 +30,10 @@ import org.apache.taverna.biocatalogue.model.SoapOperationIdentity;
 import org.apache.taverna.biocatalogue.model.SoapOperationPortIdentity;
 import org.apache.taverna.biocatalogue.model.SoapProcessorIdentity;
 import org.apache.taverna.biocatalogue.model.Util;
-import net.sf.taverna.t2.activities.rest.RESTActivity;
-import net.sf.taverna.t2.activities.rest.RESTActivity.HTTP_METHOD;
-import net.sf.taverna.t2.activities.wsdl.WSDLActivity;
-import net.sf.taverna.t2.activities.wsdl.servicedescriptions.WSDLServiceDescription;
+import org.apache.taverna.activities.rest.RESTActivity;
+import org.apache.taverna.activities.rest.RESTActivity.HTTP_METHOD;
+import org.apache.taverna.activities.wsdl.WSDLActivity;
+import org.apache.taverna.activities.wsdl.servicedescriptions.WSDLServiceDescription;
 import org.apache.taverna.ui.menu.ContextualSelection;
 import org.apache.taverna.ui.perspectives.biocatalogue.MainComponentFactory;
 import org.apache.taverna.ui.perspectives.biocatalogue.integration.service_panel.BioCatalogueRESTServiceProvider;
@@ -42,13 +42,13 @@ import org.apache.taverna.ui.perspectives.biocatalogue.integration.service_panel
 import org.apache.taverna.ui.perspectives.biocatalogue.integration.service_panel.WSDLOperationFromBioCatalogueServiceDescription;
 import org.apache.taverna.workbench.file.FileManager;
 import org.apache.taverna.workbench.ui.workflowview.WorkflowView;
-import net.sf.taverna.t2.workflowmodel.Dataflow;
-import net.sf.taverna.t2.workflowmodel.Port;
-import net.sf.taverna.t2.workflowmodel.Processor;
-import net.sf.taverna.t2.workflowmodel.processor.activity.Activity;
-import net.sf.taverna.t2.workflowmodel.processor.activity.ActivityInputPort;
-import net.sf.taverna.t2.workflowmodel.processor.activity.ActivityOutputPort;
-import net.sf.taverna.t2.workflowmodel.utils.Tools;
+import org.apache.taverna.workflowmodel.Dataflow;
+import org.apache.taverna.workflowmodel.Port;
+import org.apache.taverna.workflowmodel.Processor;
+import org.apache.taverna.workflowmodel.processor.activity.Activity;
+import org.apache.taverna.workflowmodel.processor.activity.ActivityInputPort;
+import org.apache.taverna.workflowmodel.processor.activity.ActivityOutputPort;
+import org.apache.taverna.workflowmodel.utils.Tools;
 
 /**
  * This class contains helpers for deeper integration with Taverna UI.

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/config/BioCataloguePluginConfiguration.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/config/BioCataloguePluginConfiguration.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/config/BioCataloguePluginConfiguration.java
index c7aa2cd..2ea1392 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/config/BioCataloguePluginConfiguration.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/config/BioCataloguePluginConfiguration.java
@@ -6,6 +6,7 @@ import java.util.Map;
 import uk.org.taverna.configuration.AbstractConfigurable;
 
 import org.apache.taverna.biocatalogue.model.connectivity.BioCatalogueClient;
+import uk.org.taverna.configuration.ConfigurationManager;
 
 /**
  *
@@ -18,7 +19,6 @@ public class BioCataloguePluginConfiguration extends AbstractConfigurable
   public static final String SOAP_OPERATIONS_IN_SERVICE_PANEL = "SOAP_Operations_in_Service_Panel";
   public static final String REST_METHODS_IN_SERVICE_PANEL = "REST_Methods_in_Service_Panel";
 
-
   private static class Singleton {
     private static BioCataloguePluginConfiguration instance = new BioCataloguePluginConfiguration();
   }

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/BioCataloguePluginInputPortContextViewFactory.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/BioCataloguePluginInputPortContextViewFactory.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/BioCataloguePluginInputPortContextViewFactory.java
index 135c2ec..f7b373e 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/BioCataloguePluginInputPortContextViewFactory.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/BioCataloguePluginInputPortContextViewFactory.java
@@ -9,7 +9,7 @@ import org.apache.taverna.biocatalogue.model.SoapOperationPortIdentity;
 import org.apache.taverna.ui.perspectives.biocatalogue.integration.Integration;
 import org.apache.taverna.workbench.ui.views.contextualviews.ContextualView;
 import org.apache.taverna.workbench.ui.views.contextualviews.activity.ContextualViewFactory;
-import net.sf.taverna.t2.workflowmodel.processor.activity.ActivityInputPort;
+import org.apache.taverna.workflowmodel.processor.activity.ActivityInputPort;
 
 
 public class BioCataloguePluginInputPortContextViewFactory implements

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/BioCataloguePluginOutputPortContextViewFactory.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/BioCataloguePluginOutputPortContextViewFactory.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/BioCataloguePluginOutputPortContextViewFactory.java
index 44ae5c4..449da90 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/BioCataloguePluginOutputPortContextViewFactory.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/BioCataloguePluginOutputPortContextViewFactory.java
@@ -9,7 +9,7 @@ import org.apache.taverna.biocatalogue.model.SoapOperationPortIdentity;
 import org.apache.taverna.ui.perspectives.biocatalogue.integration.Integration;
 import org.apache.taverna.workbench.ui.views.contextualviews.ContextualView;
 import org.apache.taverna.workbench.ui.views.contextualviews.activity.ContextualViewFactory;
-import net.sf.taverna.t2.workflowmodel.processor.activity.ActivityOutputPort;
+import org.apache.taverna.workflowmodel.processor.activity.ActivityOutputPort;
 
 
 public class BioCataloguePluginOutputPortContextViewFactory implements

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/BioCataloguePluginProcessorContextViewFactory.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/BioCataloguePluginProcessorContextViewFactory.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/BioCataloguePluginProcessorContextViewFactory.java
index 454da5c..c9b25f0 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/BioCataloguePluginProcessorContextViewFactory.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/BioCataloguePluginProcessorContextViewFactory.java
@@ -9,7 +9,7 @@ import org.apache.taverna.biocatalogue.model.SoapOperationIdentity;
 import org.apache.taverna.ui.perspectives.biocatalogue.integration.Integration;
 import org.apache.taverna.workbench.ui.views.contextualviews.ContextualView;
 import org.apache.taverna.workbench.ui.views.contextualviews.activity.ContextualViewFactory;
-import net.sf.taverna.t2.workflowmodel.Processor;
+import org.apache.taverna.workflowmodel.Processor;
 
 public class BioCataloguePluginProcessorContextViewFactory implements
 		ContextualViewFactory<Processor> {

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/ProcessorInputPortView.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/ProcessorInputPortView.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/ProcessorInputPortView.java
index 9e6dae0..e2e60d5 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/ProcessorInputPortView.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/ProcessorInputPortView.java
@@ -5,7 +5,7 @@ import javax.swing.JPanel;
 
 import org.apache.taverna.biocatalogue.model.BioCataloguePluginConstants;
 import org.apache.taverna.workbench.ui.views.contextualviews.ContextualView;
-import net.sf.taverna.t2.workflowmodel.processor.activity.ActivityInputPort;
+import org.apache.taverna.workflowmodel.processor.activity.ActivityInputPort;
 
 
 public class ProcessorInputPortView extends ContextualView

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/ProcessorOutputPortView.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/ProcessorOutputPortView.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/ProcessorOutputPortView.java
index 69e22fb..845b5a7 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/ProcessorOutputPortView.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/ProcessorOutputPortView.java
@@ -5,7 +5,7 @@ import javax.swing.JPanel;
 
 import org.apache.taverna.biocatalogue.model.BioCataloguePluginConstants;
 import org.apache.taverna.workbench.ui.views.contextualviews.ContextualView;
-import net.sf.taverna.t2.workflowmodel.processor.activity.ActivityOutputPort;
+import org.apache.taverna.workflowmodel.processor.activity.ActivityOutputPort;
 
 
 public class ProcessorOutputPortView extends ContextualView

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/ProcessorView.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/ProcessorView.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/ProcessorView.java
index 83820c3..d41632c 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/ProcessorView.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/contextual_views/ProcessorView.java
@@ -36,7 +36,7 @@ import org.apache.taverna.ui.perspectives.biocatalogue.integration.Integration;
 import org.apache.taverna.ui.perspectives.biocatalogue.integration.health_check.ServiceHealthChecker;
 import org.apache.taverna.ui.perspectives.biocatalogue.integration.health_check.ServiceMonitoringStatusInterpreter;
 import org.apache.taverna.workbench.ui.views.contextualviews.ContextualView;
-import net.sf.taverna.t2.workflowmodel.Processor;
+import org.apache.taverna.workflowmodel.Processor;
 
 import org.apache.log4j.Logger;
 import org.biocatalogue.x2009.xml.rest.Service;

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/BioCatalogueWSDLActivityHealthCheck.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/BioCatalogueWSDLActivityHealthCheck.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/BioCatalogueWSDLActivityHealthCheck.java
index b8abef5..0129268 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/BioCatalogueWSDLActivityHealthCheck.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/BioCatalogueWSDLActivityHealthCheck.java
@@ -1,7 +1,7 @@
 package org.apache.taverna.ui.perspectives.biocatalogue.integration.health_check;
 
-import net.sf.taverna.t2.visit.VisitKind;
-import net.sf.taverna.t2.visit.Visitor;
+import org.apache.taverna.visit.VisitKind;
+import org.apache.taverna.visit.Visitor;
 
 /**
  * A {@link BioCatalogueWSDLActivityHealthCheck} is a kind of visit that determines

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/BioCatalogueWSDLActivityHealthCheckVisitExplainer.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/BioCatalogueWSDLActivityHealthCheckVisitExplainer.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/BioCatalogueWSDLActivityHealthCheckVisitExplainer.java
index 0fab556..5ae0927 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/BioCatalogueWSDLActivityHealthCheckVisitExplainer.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/BioCatalogueWSDLActivityHealthCheckVisitExplainer.java
@@ -11,9 +11,9 @@ import javax.swing.JPanel;
 
 import org.apache.taverna.biocatalogue.model.SoapOperationIdentity;
 import org.apache.taverna.lang.ui.ReadOnlyTextArea;
-import net.sf.taverna.t2.visit.VisitKind;
-import net.sf.taverna.t2.visit.VisitReport;
-import net.sf.taverna.t2.workbench.report.explainer.VisitExplainer;
+import org.apache.taverna.visit.VisitKind;
+import org.apache.taverna.visit.VisitReport;
+import org.apache.taverna.workbench.report.explainer.VisitExplainer;
 
 // import status constants
 import static org.apache.taverna.ui.perspectives.biocatalogue.integration.health_check.BioCatalogueWSDLActivityHealthCheck.*;

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/BioCatalogueWSDLActivityHealthChecker.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/BioCatalogueWSDLActivityHealthChecker.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/BioCatalogueWSDLActivityHealthChecker.java
index eba0f0d..7fc7292 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/BioCatalogueWSDLActivityHealthChecker.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/BioCatalogueWSDLActivityHealthChecker.java
@@ -14,12 +14,12 @@ import org.biocatalogue.x2009.xml.rest.TestScript;
 import org.apache.taverna.biocatalogue.model.SoapOperationIdentity;
 import org.apache.taverna.biocatalogue.model.Util;
 import org.apache.taverna.biocatalogue.model.connectivity.BioCatalogueClient;
-import net.sf.taverna.t2.activities.wsdl.WSDLActivity;
-import net.sf.taverna.t2.activities.wsdl.WSDLActivityConfigurationBean;
+import org.apache.taverna.activities.wsdl.WSDLActivity;
+import org.apache.taverna.activities.wsdl.WSDLActivityConfigurationBean;
 import org.apache.taverna.ui.perspectives.biocatalogue.MainComponentFactory;
-import net.sf.taverna.t2.visit.VisitReport;
-import net.sf.taverna.t2.visit.VisitReport.Status;
-import net.sf.taverna.t2.workflowmodel.health.HealthChecker;
+import org.apache.taverna.visit.VisitReport;
+import org.apache.taverna.visit.VisitReport.Status;
+import org.apache.taverna.workflowmodel.health.HealthChecker;
 
 
 /**

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/ServiceMonitoringStatusInterpreter.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/ServiceMonitoringStatusInterpreter.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/ServiceMonitoringStatusInterpreter.java
index 4e0a7ac..7de73db 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/ServiceMonitoringStatusInterpreter.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/health_check/ServiceMonitoringStatusInterpreter.java
@@ -6,8 +6,8 @@ import javax.swing.Icon;
 import javax.swing.ImageIcon;
 
 import org.apache.taverna.biocatalogue.model.ResourceManager;
-import net.sf.taverna.t2.visit.VisitReport;
-import net.sf.taverna.t2.visit.VisitReport.Status;
+import org.apache.taverna.visit.VisitReport;
+import org.apache.taverna.visit.VisitReport.Status;
 
 import org.biocatalogue.x2009.xml.rest.MonitoringStatus;
 import org.biocatalogue.x2009.xml.rest.MonitoringStatusLabel;

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/menus/BioCatalogueContextualMenuSection.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/menus/BioCatalogueContextualMenuSection.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/menus/BioCatalogueContextualMenuSection.java
index 86cb665..2256fce 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/menus/BioCatalogueContextualMenuSection.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/menus/BioCatalogueContextualMenuSection.java
@@ -12,9 +12,9 @@ import org.apache.taverna.ui.menu.AbstractMenuSection;
 import org.apache.taverna.ui.menu.ContextualMenuComponent;
 import org.apache.taverna.ui.menu.ContextualSelection;
 import org.apache.taverna.ui.menu.DefaultContextualMenu;
-import net.sf.taverna.t2.workflowmodel.Dataflow;
-import net.sf.taverna.t2.workflowmodel.InputPort;
-import net.sf.taverna.t2.workflowmodel.Processor;
+import org.apache.taverna.workflowmodel.Dataflow;
+import org.apache.taverna.workflowmodel.InputPort;
+import org.apache.taverna.workflowmodel.Processor;
 
 
 public class BioCatalogueContextualMenuSection extends AbstractMenuSection implements ContextualMenuComponent

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/menus/MenuActionInputPort.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/menus/MenuActionInputPort.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/menus/MenuActionInputPort.java
index 8a8bf23..b647f82 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/menus/MenuActionInputPort.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/menus/MenuActionInputPort.java
@@ -9,7 +9,7 @@ import javax.swing.JOptionPane;
 
 import org.apache.taverna.ui.menu.AbstractContextualMenuAction;
 
-import net.sf.taverna.t2.workflowmodel.InputPort;
+import org.apache.taverna.workflowmodel.InputPort;
 
 
 /**

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/menus/MenuActionProcessorHealthCheck.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/menus/MenuActionProcessorHealthCheck.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/menus/MenuActionProcessorHealthCheck.java
index ddf1382..b6eed20 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/menus/MenuActionProcessorHealthCheck.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/menus/MenuActionProcessorHealthCheck.java
@@ -10,7 +10,7 @@ import org.apache.taverna.biocatalogue.model.SoapOperationIdentity;
 import org.apache.taverna.ui.menu.AbstractContextualMenuAction;
 import org.apache.taverna.ui.perspectives.biocatalogue.integration.Integration;
 import org.apache.taverna.ui.perspectives.biocatalogue.integration.health_check.ServiceHealthChecker;
-import net.sf.taverna.t2.workflowmodel.Processor;
+import org.apache.taverna.workflowmodel.Processor;
 
 
 public class MenuActionProcessorHealthCheck extends AbstractContextualMenuAction {

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/BioCatalogueRESTServiceProvider.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/BioCatalogueRESTServiceProvider.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/BioCatalogueRESTServiceProvider.java
index 3bf6951..ce52b04 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/BioCatalogueRESTServiceProvider.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/BioCatalogueRESTServiceProvider.java
@@ -30,7 +30,7 @@ import org.apache.log4j.Logger;
 
 //import net.sf.taverna.t2.activities.rest.ui.servicedescription.RESTActivityIcon;
 import org.apache.taverna.servicedescriptions.AbstractConfigurableServiceProvider;
-import net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionRegistryImpl;
+import org.apache.taverna.servicedescriptions.impl.ServiceDescriptionRegistryImpl;
 
 /**
  * Service provider for REST service added to the Service Panel through the

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/BioCatalogueServiceProvider.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/BioCatalogueServiceProvider.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/BioCatalogueServiceProvider.java
index a9d3c32..9b3c089 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/BioCatalogueServiceProvider.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/BioCatalogueServiceProvider.java
@@ -18,13 +18,13 @@ import com.thoughtworks.xstream.io.xml.DomDriver;
 
 import org.apache.taverna.biocatalogue.model.SoapOperationIdentity;
 import org.apache.taverna.biocatalogue.model.Util;
-import net.sf.taverna.t2.activities.wsdl.WSDLActivityHealthChecker;
+import org.apache.taverna.activities.wsdl.WSDLActivityHealthChecker;
 import org.apache.taverna.servicedescriptions.ServiceDescription;
 import org.apache.taverna.servicedescriptions.ServiceDescriptionProvider;
 import org.apache.taverna.ui.perspectives.biocatalogue.BioCataloguePerspective;
 import org.apache.taverna.ui.perspectives.biocatalogue.integration.config.BioCataloguePluginConfiguration;
-import net.sf.taverna.wsdl.parser.UnknownOperationException;
-import net.sf.taverna.wsdl.parser.WSDLParser;
+import org.apache.taverna.wsdl.parser.UnknownOperationException;
+import org.apache.taverna.wsdl.parser.WSDLParser;
 
 public class BioCatalogueServiceProvider implements ServiceDescriptionProvider
 {

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/BioCatalogueWSDLOperationServiceProvider.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/BioCatalogueWSDLOperationServiceProvider.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/BioCatalogueWSDLOperationServiceProvider.java
index c0d588e..a5d9dfd 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/BioCatalogueWSDLOperationServiceProvider.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/BioCatalogueWSDLOperationServiceProvider.java
@@ -35,11 +35,11 @@ import org.apache.log4j.Logger;
 import org.xml.sax.SAXException;
 
 import org.apache.taverna.biocatalogue.model.SoapOperationIdentity;
-import net.sf.taverna.t2.activities.wsdl.WSDLActivityHealthChecker;
+import org.apache.taverna.activities.wsdl.WSDLActivityHealthChecker;
 import org.apache.taverna.servicedescriptions.AbstractConfigurableServiceProvider;
-import net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionRegistryImpl;
-import net.sf.taverna.wsdl.parser.UnknownOperationException;
-import net.sf.taverna.wsdl.parser.WSDLParser;
+import org.apache.taverna.servicedescriptions.impl.ServiceDescriptionRegistryImpl;
+import org.apache.taverna.wsdl.parser.UnknownOperationException;
+import org.apache.taverna.wsdl.parser.WSDLParser;
 
 /**
  * Service provider for WSDL operations added to the Service Panel through the

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/RESTFromBioCatalogueServiceDescription.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/RESTFromBioCatalogueServiceDescription.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/RESTFromBioCatalogueServiceDescription.java
index 44a4f83..882c6a4 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/RESTFromBioCatalogueServiceDescription.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/RESTFromBioCatalogueServiceDescription.java
@@ -8,13 +8,13 @@ import javax.swing.Icon;
 
 import org.apache.taverna.lang.beans.PropertyAnnotation;
 import org.apache.taverna.servicedescriptions.ServiceDescription;
-import net.sf.taverna.t2.workflowmodel.processor.activity.Activity;
+import org.apache.taverna.workflowmodel.processor.activity.Activity;
 
-import net.sf.taverna.t2.activities.rest.RESTActivity;
-import net.sf.taverna.t2.activities.rest.RESTActivity.DATA_FORMAT;
-import net.sf.taverna.t2.activities.rest.RESTActivity.HTTP_METHOD;
-import net.sf.taverna.t2.activities.rest.RESTActivityConfigurationBean;
-import net.sf.taverna.t2.activities.rest.ui.servicedescription.RESTActivityIcon;
+import org.apache.taverna.activities.rest.RESTActivity;
+import org.apache.taverna.activities.rest.RESTActivity.DATA_FORMAT;
+import org.apache.taverna.activities.rest.RESTActivity.HTTP_METHOD;
+import org.apache.taverna.activities.rest.RESTActivityConfigurationBean;
+import org.apache.taverna.activities.rest.ui.servicedescription.RESTActivityIcon;
 
 /**
  * This class is solely intended to support import of REST services from BioCatalogue.

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/95d4269b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/WSDLOperationFromBioCatalogueServiceDescription.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/WSDLOperationFromBioCatalogueServiceDescription.java b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/WSDLOperationFromBioCatalogueServiceDescription.java
index ff6517a..6a94db2 100644
--- a/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/WSDLOperationFromBioCatalogueServiceDescription.java
+++ b/taverna-perspective-biocatalogue/src/main/java/org/apache/taverna/ui/perspectives/biocatalogue/integration/service_panel/WSDLOperationFromBioCatalogueServiceDescription.java
@@ -6,9 +6,9 @@ import java.util.List;
 import javax.swing.Icon;
 
 import org.apache.taverna.biocatalogue.model.SoapOperationIdentity;
-import net.sf.taverna.t2.activities.wsdl.WSDLActivity;
-import net.sf.taverna.t2.activities.wsdl.WSDLActivityConfigurationBean;
-import net.sf.taverna.t2.activities.wsdl.servicedescriptions.WSDLActivityIcon;
+import org.apache.taverna.activities.wsdl.WSDLActivity;
+import org.apache.taverna.activities.wsdl.WSDLActivityConfigurationBean;
+import org.apache.taverna.activities.wsdl.servicedescriptions.WSDLActivityIcon;
 import org.apache.taverna.lang.beans.PropertyAnnotation;
 import org.apache.taverna.servicedescriptions.ServiceDescription;
 


[2/2] incubator-taverna-workbench git commit: poms cleaning

Posted by re...@apache.org.
poms cleaning

Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/commit/a87b85d8
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/tree/a87b85d8
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/diff/a87b85d8

Branch: refs/heads/master
Commit: a87b85d81461b6f4924de5bcef74d9844461f871
Parents: 95d4269
Author: Dmitry Repchevsky <re...@list.ru>
Authored: Mon Mar 30 15:31:17 2015 +0200
Committer: Dmitry Repchevsky <re...@list.ru>
Committed: Mon Mar 30 15:32:36 2015 +0200

----------------------------------------------------------------------
 taverna-loop-ui/pom.xml                         |  6 ++++++
 taverna-menu-items/pom.xml                      | 22 +++++++++-----------
 taverna-perspective-myexperiment/pom.xml        |  7 ++++++-
 .../myexperiment/UploadWorkflowDialog.java      |  2 +-
 .../saveactions/SaveAllResultsAsXML.java        |  2 +-
 .../workflow/RenderedResultComponent.java       |  2 +-
 taverna-workflow-explorer/pom.xml               |  5 -----
 7 files changed, 25 insertions(+), 21 deletions(-)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/a87b85d8/taverna-loop-ui/pom.xml
----------------------------------------------------------------------
diff --git a/taverna-loop-ui/pom.xml b/taverna-loop-ui/pom.xml
index 97be01c..5549d6d 100644
--- a/taverna-loop-ui/pom.xml
+++ b/taverna-loop-ui/pom.xml
@@ -108,5 +108,11 @@
             <version>${project.parent.version}</version>
             <scope>test</scope>
         </dependency>
+        <dependency>
+            <groupId>org.apache.taverna.ui-activities</groupId>
+            <artifactId>taverna-beanshell-activity-ui</artifactId>
+            <version>3.1.0-incubating-SNAPSHOT</version>
+            <type>jar</type>
+        </dependency>
     </dependencies>
 </project>
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/a87b85d8/taverna-menu-items/pom.xml
----------------------------------------------------------------------
diff --git a/taverna-menu-items/pom.xml b/taverna-menu-items/pom.xml
index 81a550a..350f9bb 100644
--- a/taverna-menu-items/pom.xml
+++ b/taverna-menu-items/pom.xml
@@ -84,17 +84,15 @@
 			<artifactId>stringconstant-activity-ui</artifactId>
 			<version>${project.parent.version}</version>
 		</dependency>
-	 <dependency>
-	  <groupId>org.apache.taverna.workbench</groupId>
-	  <artifactId>taverna-stringconstant-activity-ui</artifactId>
-	  <version>3.1.0-incubating-SNAPSHOT</version>
-	  <type>jar</type>
-	 </dependency>
-	 <dependency>
-	  <groupId>org.apache.taverna.workbench</groupId>
-	  <artifactId>taverna-contextual-views-impl</artifactId>
-	  <version>3.1.0-incubating-SNAPSHOT</version>
-	  <type>jar</type>
-	 </dependency>
+                <dependency>
+                        <groupId>${project.parent.groupId}</groupId>
+                        <artifactId>taverna-stringconstant-activity-ui</artifactId>
+                        <version>${project.parent.version}</version>
+                </dependency>
+                <dependency>
+                        <groupId>${project.parent.groupId}</groupId>
+                        <artifactId>taverna-contextual-views-impl</artifactId>
+                        <version>${project.parent.version}</version>
+                </dependency>
 	</dependencies>
 </project>
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/a87b85d8/taverna-perspective-myexperiment/pom.xml
----------------------------------------------------------------------
diff --git a/taverna-perspective-myexperiment/pom.xml b/taverna-perspective-myexperiment/pom.xml
index 217c137..3d47e46 100644
--- a/taverna-perspective-myexperiment/pom.xml
+++ b/taverna-perspective-myexperiment/pom.xml
@@ -52,7 +52,11 @@
 			<artifactId>taverna-ui</artifactId>
 			<version>${project.parent.version}</version>
 		</dependency>
-
+                <dependency>
+                        <groupId>${project.parent.groupId}</groupId>
+                        <artifactId>taverna-file-impl</artifactId>
+                        <version>${project.parent.version}</version>
+                </dependency>
 		<dependency>
 			<groupId>org.apache.taverna.osgi</groupId>
 			<artifactId>taverna-configuration-api</artifactId>
@@ -84,6 +88,7 @@
                     <artifactId>taverna-credential-manager</artifactId>
                     <version>${taverna.engine.version}</version>
                 </dependency>
+
 	</dependencies>
 	<packaging>bundle</packaging>
 </project>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/a87b85d8/taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/UploadWorkflowDialog.java
----------------------------------------------------------------------
diff --git a/taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/UploadWorkflowDialog.java b/taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/UploadWorkflowDialog.java
index a6155f5..022a22e 100644
--- a/taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/UploadWorkflowDialog.java
+++ b/taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/UploadWorkflowDialog.java
@@ -70,7 +70,7 @@ import org.apache.taverna.ui.perspectives.myexperiment.model.ServerResponse;
 import org.apache.taverna.ui.perspectives.myexperiment.model.Util;
 import org.apache.taverna.ui.perspectives.myexperiment.model.Workflow;
 import org.apache.taverna.workbench.file.FileManager;
-import net.sf.taverna.t2.workbench.file.impl.actions.SaveWorkflowAsAction;
+import org.apache.taverna.workbench.file.impl.actions.SaveWorkflowAsAction;
 import org.apache.taverna.workbench.helper.HelpEnabledDialog;
 import org.apache.taverna.workbench.icons.WorkbenchIcons;
 import org.apache.taverna.workflowmodel.Dataflow;

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/a87b85d8/taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/saveactions/SaveAllResultsAsXML.java
----------------------------------------------------------------------
diff --git a/taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/saveactions/SaveAllResultsAsXML.java b/taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/saveactions/SaveAllResultsAsXML.java
index e255e73..1d01de6 100644
--- a/taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/saveactions/SaveAllResultsAsXML.java
+++ b/taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/saveactions/SaveAllResultsAsXML.java
@@ -29,7 +29,7 @@ import java.util.Map;
 
 import javax.swing.AbstractAction;
 
-import net.sf.taverna.t2.results.BaclavaDocumentPathHandler;
+import org.apache.taverna.results.BaclavaDocumentPathHandler;
 
 /**
  * Stores the entire map of result objects to disk as a single XML data

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/a87b85d8/taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/workflow/RenderedResultComponent.java
----------------------------------------------------------------------
diff --git a/taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/workflow/RenderedResultComponent.java b/taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/workflow/RenderedResultComponent.java
index 416346a..4b6e314 100644
--- a/taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/workflow/RenderedResultComponent.java
+++ b/taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/workflow/RenderedResultComponent.java
@@ -27,7 +27,7 @@ import static java.awt.event.ItemEvent.SELECTED;
 import static javax.swing.BoxLayout.LINE_AXIS;
 import static javax.swing.SwingUtilities.invokeLater;
 import static org.apache.taverna.renderers.RendererUtils.getInputStream;
-import static net.sf.taverna.t2.results.ResultsUtils;
+import static org.apache.taverna.results.ResultsUtils;
 import static org.apache.taverna.workbench.icons.WorkbenchIcons.refreshIcon;
 import static org.apache.commons.lang.StringEscapeUtils.escapeHtml;
 

http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/a87b85d8/taverna-workflow-explorer/pom.xml
----------------------------------------------------------------------
diff --git a/taverna-workflow-explorer/pom.xml b/taverna-workflow-explorer/pom.xml
index cc34651..ad2d0f4 100644
--- a/taverna-workflow-explorer/pom.xml
+++ b/taverna-workflow-explorer/pom.xml
@@ -40,11 +40,6 @@
 		</dependency>
 		<dependency>
 			<groupId>${project.parent.groupId}</groupId>
-			<artifactId>taverna-workbench-impl</artifactId>
-			<version>${project.parent.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>${project.parent.groupId}</groupId>
 			<artifactId>taverna-workflow-view</artifactId>
 			<version>${project.parent.version}</version>
 		</dependency>