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Posted to commits@ctakes.apache.org by ch...@apache.org on 2014/11/07 22:56:45 UTC
svn commit: r1637466 [14/14] -
/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/
Modified: ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/text1.txt.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/text1.txt.xml?rev=1637466&r1=1637465&r2=1637466&view=diff
==============================================================================
--- ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/text1.txt.xml (original)
+++ ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/text1.txt.xml Fri Nov 7 21:56:44 2014
@@ -1,415 +1,52 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<CAS version="2">
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- <org.apache.ctakes.typesystem.type.syntax.Lemma _id="265" key="patienting" posTag="VB"/>
- <org.apache.ctakes.typesystem.type.syntax.Lemma _id="262" key="patient" posTag="NN"/>
- <org.apache.ctakes.typesystem.type.syntax.Lemma _id="259" key="patient" posTag="RB"/>
- <org.apache.ctakes.typesystem.type.syntax.Lemma _id="256" key="patient" posTag="JJ"/>
- <org.apache.ctakes.typesystem.type.syntax.Lemma _id="253" key="patient" posTag="VB"/>
- <org.apache.ctakes.typesystem.type.syntax.Lemma _id="250" key="patients" posTag="NN"/>
- <org.apache.ctakes.typesystem.type.syntax.Lemma _id="247" key="patients" posTag="VB"/>
-</CAS>
+<?xml version="1.0" encoding="UTF-8"?><CAS version="2">
+ <uima.cas.Sofa _indexed="0" _id="3" sofaNum="1" sofaID="_InitialView" mimeType="text" sofaString=" The patient reported pain in her upper arm. No swelling. Aspirin 325 mg. "/>
+ <org.apache.ctakes.typesystem.type.structured.DocumentID _indexed="1" _id="1" documentID="text1.txt"/>
+ <uima.tcas.DocumentAnnotation _indexed="1" _id="10" _ref_sofa="3" begin="0" end="78" language="x-unspecified"/>
+ <org.apache.ctakes.typesystem.type.textspan.Segment _indexed="1" _id="15" _ref_sofa="3" begin="0" end="78" id="SIMPLE_SEGMENT"/>
+ <org.apache.ctakes.typesystem.type.textspan.Sentence _indexed="1" _id="21" _ref_sofa="3" begin="2" end="45" sentenceNumber="0"/>
+ <org.apache.ctakes.typesystem.type.textspan.Sentence _indexed="1" _id="27" _ref_sofa="3" begin="47" end="59" sentenceNumber="1"/>
+ <org.apache.ctakes.typesystem.type.textspan.Sentence _indexed="1" _id="33" _ref_sofa="3" begin="61" end="76" sentenceNumber="2"/>
+ <org.apache.ctakes.typesystem.type.syntax.NewlineToken _indexed="1" _id="39" _ref_sofa="3" begin="0" end="2" tokenNumber="0" normalizedForm=" "/>
+ <org.apache.ctakes.typesystem.type.syntax.NewlineToken _indexed="1" _id="47" _ref_sofa="3" begin="45" end="47" tokenNumber="10" normalizedForm=" "/>
+ <org.apache.ctakes.typesystem.type.syntax.NewlineToken _indexed="1" _id="55" _ref_sofa="3" begin="59" end="61" tokenNumber="14" normalizedForm=" "/>
+ <org.apache.ctakes.typesystem.type.syntax.NewlineToken _indexed="1" _id="63" _ref_sofa="3" begin="76" end="78" tokenNumber="19" normalizedForm=" "/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="71" _ref_sofa="3" begin="2" end="5" tokenNumber="1" normalizedForm="The" partOfSpeech="DT" capitalization="1" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="83" _ref_sofa="3" begin="6" end="13" tokenNumber="2" normalizedForm="patient" partOfSpeech="NN" capitalization="0" numPosition="0" canonicalForm="patient"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="95" _ref_sofa="3" begin="14" end="22" tokenNumber="3" normalizedForm="report" partOfSpeech="VBD" capitalization="0" numPosition="0" canonicalForm="report"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="107" _ref_sofa="3" begin="23" end="27" tokenNumber="4" normalizedForm="pain" partOfSpeech="NN" capitalization="0" numPosition="0" canonicalForm="pain"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="119" _ref_sofa="3" begin="28" end="30" tokenNumber="5" normalizedForm="in" partOfSpeech="IN" capitalization="0" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="131" _ref_sofa="3" begin="31" end="34" tokenNumber="6" normalizedForm="her" partOfSpeech="PRP$" capitalization="0" numPosition="0" canonicalForm="her"/>
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+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="155" _ref_sofa="3" begin="41" end="44" tokenNumber="8" normalizedForm="arm" partOfSpeech="NN" capitalization="0" numPosition="0" canonicalForm="arm"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="175" _ref_sofa="3" begin="47" end="49" tokenNumber="11" normalizedForm="no" partOfSpeech="DT" capitalization="1" numPosition="0" canonicalForm="no"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="187" _ref_sofa="3" begin="50" end="58" tokenNumber="12" normalizedForm="swel" partOfSpeech="NN" capitalization="0" numPosition="0" canonicalForm="swel"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="207" _ref_sofa="3" begin="61" end="68" tokenNumber="15" normalizedForm="aspirin" partOfSpeech="NNP" capitalization="1" numPosition="0" canonicalForm="aspirin"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="228" _ref_sofa="3" begin="73" end="75" tokenNumber="17" normalizedForm="mg" partOfSpeech="NNS" capitalization="0" numPosition="0" canonicalForm="mg"/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="167" _ref_sofa="3" begin="44" end="45" tokenNumber="9" normalizedForm="." partOfSpeech="."/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="199" _ref_sofa="3" begin="58" end="59" tokenNumber="13" normalizedForm="." partOfSpeech="."/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="240" _ref_sofa="3" begin="75" end="76" tokenNumber="18" normalizedForm="." partOfSpeech="."/>
+ <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="219" _ref_sofa="3" begin="69" end="72" tokenNumber="16" normalizedForm="325" partOfSpeech="CD" numType="1"/>
+ <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation _indexed="1" _id="248" _ref_sofa="3" begin="69" end="75" id="2" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="266" _ref_sofa="3" begin="2" end="13" chunkType="NP"/>
+ <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="276" _ref_sofa="3" begin="23" end="44" chunkType="NP"/>
+ <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="286" _ref_sofa="3" begin="31" end="44" chunkType="NP"/>
+ <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="291" _ref_sofa="3" begin="47" end="58" chunkType="NP"/>
+ <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="296" _ref_sofa="3" begin="61" end="75" chunkType="NP"/>
+ <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="301" _ref_sofa="3" begin="69" end="75" chunkType="NP"/>
+ <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="271" _ref_sofa="3" begin="14" end="22" chunkType="VP"/>
+ <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="281" _ref_sofa="3" begin="28" end="30" chunkType="PP"/>
+ <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="306" _ref_sofa="3" begin="2" end="13"/>
+ <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="310" _ref_sofa="3" begin="23" end="44"/>
+ <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="318" _ref_sofa="3" begin="47" end="58"/>
+ <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="322" _ref_sofa="3" begin="61" end="75"/>
+ <org.apache.ctakes.typesystem.type.textsem.MedicationMention _indexed="1" _id="340" _ref_sofa="3" begin="61" end="68" id="1" _ref_ontologyConceptArr="330" typeID="1" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
+ <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _indexed="1" _id="383" _ref_sofa="3" begin="23" end="27" id="0" _ref_ontologyConceptArr="380" typeID="3" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
+ <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="370" codingScheme="SNOMED" code="100206" oid="100206#SNOMED" score="0.0" disambiguated="false" cui="Cui0206" tui="T_SS"/>
+ <uima.cas.FSArray _id="380" size="1">
+ <i>370</i>
+ </uima.cas.FSArray>
+ <org.apache.ctakes.typesystem.type.refsem.OntologyConcept _id="333" codingScheme="RXNORM" code="C6666666" oid="C6666666#RXNORM" score="0.0" disambiguated="false"/>
+ <uima.cas.FSArray _id="330" size="1">
+ <i>333</i>
+ </uima.cas.FSArray>
+</CAS>