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Posted to github@arrow.apache.org by GitBox <gi...@apache.org> on 2022/06/23 11:58:04 UTC
[GitHub] [arrow] HeinzStuecke opened a new issue, #13425: Warning message: In install.packages("arrow") : installation of package ‘arrow’ had non-zero exit status
HeinzStuecke opened a new issue, #13425:
URL: https://github.com/apache/arrow/issues/13425
Hello, I am trying to use the `feather` library within an R-script which I am trying to run on the High Computation Cluster of my university. Apparently, I need `arrow` to use `feather`. I installed feather via `install.packages("feather")`. However, the installation of `install.packages("arrow")` fails.
Can anyone help me out here?
```Txt
Using username "username".
username@gateway.hpc.university.org's password:
Last login: Thu Jun 23 13:06:13 2022 from see120.see.university.org
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+------------------------------------------------------------------------------+
/usr/bin/id: cannot find name for group ID 1242206
[username@frontend01 ~]$ module load R/3.6.1
[username@frontend01 ~]$ ARROW_R_DEV=TRUE
[username@frontend01 ~]$ install_arrow(verbose = TRUE)
-bash: syntax error near unexpected token `verbose'
[username@frontend01 ~]$ install_arrow
bash: install_arrow: command not found...
[username@frontend01 ~]$ R
WARNING: ignoring environment value of R_HOME
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> install_arrow(verbos = TRUE)
Error in install_arrow(verbos = TRUE) :
could not find function "install_arrow"
> install.packages ("arrow")
Installing package into ‘/beegfs/home/users/b/username/R/x86_64-pc-linux-gnu-lib rary/3.6’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
Secure CRAN mirrors
1: 0-Cloud [https]
2: Australia (Canberra) [https]
3: Australia (Melbourne 1) [https]
4: Australia (Melbourne 2) [https]
5: Australia (Perth) [https]
6: Austria [https]
7: Belgium (Brussels) [https]
8: Brazil (PR) [https]
9: Brazil (RJ) [https]
10: Brazil (SP 1) [https]
11: Brazil (SP 2) [https]
12: Bulgaria [https]
13: Canada (MB) [https]
14: Canada (ON 3) [https]
15: Chile (Santiago) [https]
16: China (Beijing 2) [https]
17: China (Beijing 3) [https]
18: China (Hefei) [https]
19: China (Hong Kong) [https]
20: China (Guangzhou) [https]
21: China (Lanzhou) [https]
22: China (Nanjing) [https]
23: China (Shanghai 2) [https]
24: China (Shenzhen) [https]
25: Colombia (Cali) [https]
26: Costa Rica [https]
27: Cyprus [https]
28: Czech Republic [https]
29: Denmark [https]
30: East Asia [https]
31: Ecuador (Cuenca) [https]
32: Ecuador (Quito) [https]
33: Estonia [https]
34: France (Lyon 1) [https]
35: France (Lyon 2) [https]
36: France (Marseille) [https]
37: France (Paris 1) [https]
38: Germany (Erlangen) [https]
39: Germany (Leipzig) [https]
40: Germany (Göttingen) [https]
41: Germany (Münster) [https]
42: Germany (Regensburg) [https]
43: Greece [https]
44: Hungary [https]
45: Iceland [https]
46: India [https]
47: Indonesia (Jakarta) [https]
48: Iran (Mashhad) [https]
49: Italy (Milano) [https]
50: Italy (Padua) [https]
51: Japan (Tokyo) [https]
52: Korea (Gyeongsan-si) [https]
53: Korea (Seoul 1) [https]
54: Korea (Ulsan) [https]
55: Malaysia [https]
56: Mexico (Mexico City) [https]
57: Morocco [https]
58: Netherlands [https]
59: New Zealand [https]
60: Norway [https]
61: South Africa (Johannesburg) [https]
62: Spain (A Coruña) [https]
63: Spain (Madrid) [https]
64: Sweden (Borås) [https]
65: Sweden (Umeå) [https]
66: Switzerland [https]
67: Taiwan (Taipei) [https]
68: Turkey (Denizli) [https]
69: Turkey (Istanbul) [https]
70: Turkey (Mersin) [https]
71: UK (Bristol) [https]
72: UK (London 1) [https]
73: USA (IA) [https]
74: USA (KS) [https]
75: USA (MI) [https]
76: USA (OH) [https]
77: USA (OR) [https]
78: USA (TN) [https]
79: USA (TX 1) [https]
80: Uruguay [https]
81: (other mirrors)
Selection: 6
trying URL 'https://cran.wu.ac.at/src/contrib/arrow_8.0.0.tar.gz'
Content type 'application/x-gzip' length 4796875 bytes (4.6 MB)
==================================================
downloaded 4.6 MB
* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
*** Found local C++ source: 'tools/cpp'
*** Building libarrow from source
For a faster, more complete installation, set the environment variable NOT_C RAN=true before installing
See install vignette for details:
https://cran.r-project.org/web/packages/arrow/vignettes/install.html
**** arrow
**** Error building Arrow C++. Re-run with ARROW_R_DEV=true for debug informatio n.
------------------------- NOTE ---------------------------
There was an issue preparing the Arrow C++ libraries.
See https://arrow.apache.org/docs/r/articles/install.html
---------------------------------------------------------
ERROR: configuration failed for package ‘arrow’
* removing ‘/beegfs/home/users/b/username/R/x86_64-pc-linux-gnu-library/3.6/arro w’
The downloaded source packages are in
‘/tmp/RtmpV3AbtA/downloaded_packages’
Warning message:
In install.packages("arrow") :
installation of package ‘arrow’ had non-zero exit status
> ARROW_R_DEV=true
Error: object 'true' not found
> install.packages ("arrow")
Installing package into ‘/beegfs/home/users/b/username/R/x86_64-pc-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
trying URL 'https://cran.wu.ac.at/src/contrib/arrow_8.0.0.tar.gz'
Content type 'application/x-gzip' length 4796875 bytes (4.6 MB)
==================================================
downloaded 4.6 MB
* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
*** Found local C++ source: 'tools/cpp'
*** Building libarrow from source
For a faster, more complete installation, set the environment variable NOT_CRAN=true before inst alling
See install vignette for details:
https://cran.r-project.org/web/packages/arrow/vignettes/install.html
**** arrow
**** Error building Arrow C++. Re-run with ARROW_R_DEV=true for debug information.
------------------------- NOTE ---------------------------
There was an issue preparing the Arrow C++ libraries.
See https://arrow.apache.org/docs/r/articles/install.html
---------------------------------------------------------
ERROR: configuration failed for package ‘arrow’
* removing ‘/beegfs/home/users/b/username/R/x86_64-pc-linux-gnu-library/3.6/arrow’
The downloaded source packages are in
‘/tmp/RtmpV3AbtA/downloaded_packages’
Warning message:
In install.packages("arrow") :
installation of package ‘arrow’ had non-zero exit status
> install.packages ("arrow", ARROW_R_DEV=true)
Installing package into ‘/beegfs/home/users/b/username/R/x86_64-pc-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
trying URL 'https://cran.wu.ac.at/src/contrib/arrow_8.0.0.tar.gz'
Content type 'application/x-gzip' length 4796875 bytes (4.6 MB)
==================================================
downloaded 4.6 MB
* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
*** Found local C++ source: 'tools/cpp'
*** Building libarrow from source
For a faster, more complete installation, set the environment variable NOT_CRAN=true before installing
See install vignette for details:
https://cran.r-project.org/web/packages/arrow/vignettes/install.html
**** arrow
**** Error building Arrow C++. Re-run with ARROW_R_DEV=true for debug information.
------------------------- NOTE ---------------------------
There was an issue preparing the Arrow C++ libraries.
See https://arrow.apache.org/docs/r/articles/install.html
---------------------------------------------------------
ERROR: configuration failed for package ‘arrow’
* removing ‘/beegfs/home/users/b/username/R/x86_64-pc-linux-gnu-library/3.6/arrow’
The downloaded source packages are in
‘/tmp/RtmpV3AbtA/downloaded_packages’
Warning message:
In install.packages("arrow", ARROW_R_DEV = true) :
installation of package ‘arrow’ had non-zero exit status
>
> Sys.setenv(ARROW_WITH_SNAPPY = "ON")
> install.packages ("arrow")
Installing package into ‘/beegfs/home/users/b/username/R/x86_64-pc-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
trying URL 'https://cran.wu.ac.at/src/contrib/arrow_8.0.0.tar.gz'
Content type 'application/x-gzip' length 4796875 bytes (4.6 MB)
==================================================
downloaded 4.6 MB
* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
*** Found local C++ source: 'tools/cpp'
*** Building libarrow from source
For a faster, more complete installation, set the environment variable NOT_CRAN=true before installing
See install vignette for details:
https://cran.r-project.org/web/packages/arrow/vignettes/install.html
**** arrow
**** Error building Arrow C++. Re-run with ARROW_R_DEV=true for debug information.
------------------------- NOTE ---------------------------
There was an issue preparing the Arrow C++ libraries.
See https://arrow.apache.org/docs/r/articles/install.html
---------------------------------------------------------
ERROR: configuration failed for package ‘arrow’
* removing ‘/beegfs/home/users/b/username/R/x86_64-pc-linux-gnu-library/3.6/arrow’
The downloaded source packages are in
‘/tmp/RtmpV3AbtA/downloaded_packages’
Warning message:
In install.packages("arrow") :
installation of package ‘arrow’ had non-zero exit status
> Sys.setenv(ARROW_R_DEV = TRUE)
> install.packages ("arrow")
Installing package into ‘/beegfs/home/users/b/username/R/x86_64-pc-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
trying URL 'https://cran.wu.ac.at/src/contrib/arrow_8.0.0.tar.gz'
Content type 'application/x-gzip' length 4796875 bytes (4.6 MB)
==================================================
downloaded 4.6 MB
* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
trying URL 'https://github.com'
downloaded 263 KB
*** Found local C++ source: 'tools/cpp'
*** Building libarrow from source
For a faster, more complete installation, set the environment variable NOT_CRAN=true before installing
See install vignette for details:
https://cran.r-project.org/web/packages/arrow/vignettes/install.html
*** Building with MAKEFLAGS= -j2
**** arrow with SOURCE_DIR='tools/cpp' BUILD_DIR='/tmp//RtmpkIthb7/file673d6ae58ef1' DEST_DIR='libarrow/arrow-8.0.0' CMAKE='/usr/bin/cmake3' EXTRA_CMAKE_FLAGS='' CC='gcc' CXX='g++ -std=gnu++11' LDFLAGS='-L/usr/local/lib64' ARROW_S3='OFF' ARROW_MIMALLOC='OFF'
++ pwd
+ : /tmp/RtmpF36ICC/R.INSTALL66a758dba1b4/arrow
+ : tools/cpp
+ : /tmp//RtmpkIthb7/file673d6ae58ef1
+ : libarrow/arrow-8.0.0
+ : /usr/bin/cmake3
++ cd tools/cpp
++ pwd
+ SOURCE_DIR=/tmp/RtmpF36ICC/R.INSTALL66a758dba1b4/arrow/tools/cpp
++ mkdir -p libarrow/arrow-8.0.0
++ cd libarrow/arrow-8.0.0
++ pwd
+ DEST_DIR=/tmp/RtmpF36ICC/R.INSTALL66a758dba1b4/arrow/libarrow/arrow-8.0.0
+ '[' '' '!=' '' ']'
+ '[' '' = false ']'
+ ARROW_DEFAULT_PARAM=OFF
+ mkdir -p /tmp//RtmpkIthb7/file673d6ae58ef1
+ pushd /tmp//RtmpkIthb7/file673d6ae58ef1
/tmp/RtmpkIthb7/file673d6ae58ef1 /tmp/RtmpF36ICC/R.INSTALL66a758dba1b4/arrow
+ /usr/bin/cmake3 -DARROW_BOOST_USE_SHARED=OFF -DARROW_BUILD_TESTS=OFF -DARROW_BUILD_SHARED=OFF -DARROW_BUILD_STATIC=ON -DARROW_COMPUTE=ON -DARROW_CSV=ON -DARROW_DATASET=ON -DARROW_DEPENDENCY_SOURCE=AUTO -DAWSSDK_SOURCE= -DARROW_FILESYSTEM=ON -DARROW_JEMALLOC=OFF -DARROW_MIMALLOC=OFF -DARROW_JSON=ON -DARROW_PARQUET=ON -DARROW_S3=OFF -DARROW_WITH_BROTLI=OFF -DARROW_WITH_BZ2=OFF -DARROW_WITH_LZ4=ON -DARROW_WITH_RE2=ON -DARROW_WITH_SNAPPY=ON -DARROW_WITH_UTF8PROC=ON -DARROW_WITH_ZLIB=OFF -DARROW_WITH_ZSTD=OFF -DARROW_VERBOSE_THIRDPARTY_BUILD=OFF -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_INSTALL_PREFIX=/tmp/RtmpF36ICC/R.INSTALL66a758dba1b4/arrow/libarrow/arrow-8.0.0 -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_UNITY_BUILD=OFF -G 'Unix Makefiles' /tmp/RtmpF36ICC/R.INSTALL66a758dba1b4/arrow/tools/cpp
-- Building using CMake version: 3.6.3
-- The C compiler identification is GNU 7.2.0
-- The CXX compiler identification is GNU 7.2.0
-- Check for working C compiler: /cluster/comp/gcc/7.2.0/bin/gcc
-- Check for working C compiler: /cluster/comp/gcc/7.2.0/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /cluster/comp/gcc/7.2.0/bin/g++
-- Check for working CXX compiler: /cluster/comp/gcc/7.2.0/bin/g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Arrow version: 8.0.0 (full: '8.0.0')
-- Arrow SO version: 800 (full: 800.0.0)
-- clang-tidy 12 not found
-- clang-format 12 not found
-- Could NOT find ClangTools (missing: CLANG_FORMAT_BIN CLANG_TIDY_BIN)
-- infer not found
fatal: Not a git repository (or any of the parent directories): .git
-- Found PythonInterp: /usr/bin/python (found version "2.7.5")
-- Found cpplint executable at /tmp/RtmpF36ICC/R.INSTALL66a758dba1b4/arrow/tools/cpp/build-support/cpplint.py
-- System processor: x86_64
-- Performing Test CXX_SUPPORTS_SSE4_2
-- Performing Test CXX_SUPPORTS_SSE4_2 - Success
-- Performing Test CXX_SUPPORTS_AVX2
-- Performing Test CXX_SUPPORTS_AVX2 - Success
-- Performing Test CXX_SUPPORTS_AVX512
-- Performing Test CXX_SUPPORTS_AVX512 - Success
-- Arrow build warning level: PRODUCTION
Using ld linker
Configured for RELEASE build (set with cmake -DCMAKE_BUILD_TYPE={release,debug,...})
-- Build Type: RELEASE
-- Using AUTO approach to find dependencies
-- ARROW_ABSL_BUILD_VERSION: 20210324.2
-- ARROW_ABSL_BUILD_SHA256_CHECKSUM: 59b862f50e710277f8ede96f083a5bb8d7c9595376146838b9580be90374ee1f
-- ARROW_AWSSDK_BUILD_VERSION: 1.8.133
-- ARROW_AWSSDK_BUILD_SHA256_CHECKSUM: d6c495bc06be5e21dac716571305d77437e7cfd62a2226b8fe48d9ab5785a8d6
-- ARROW_AWS_CHECKSUMS_BUILD_VERSION: v0.1.12
-- ARROW_AWS_CHECKSUMS_BUILD_SHA256_CHECKSUM: 394723034b81cc7cd528401775bc7aca2b12c7471c92350c80a0e2fb9d2909fe
-- ARROW_AWS_C_COMMON_BUILD_VERSION: v0.6.9
-- ARROW_AWS_C_COMMON_BUILD_SHA256_CHECKSUM: 928a3e36f24d1ee46f9eec360ec5cebfe8b9b8994fe39d4fa74ff51aebb12717
-- ARROW_AWS_C_EVENT_STREAM_BUILD_VERSION: v0.1.5
-- ARROW_AWS_C_EVENT_STREAM_BUILD_SHA256_CHECKSUM: f1b423a487b5d6dca118bfc0d0c6cc596dc476b282258a3228e73a8f730422d4
-- ARROW_BOOST_BUILD_VERSION: 1.75.0
-- ARROW_BOOST_BUILD_SHA256_CHECKSUM: 267e04a7c0bfe85daf796dedc789c3a27a76707e1c968f0a2a87bb96331e2b61
-- ARROW_BROTLI_BUILD_VERSION: v1.0.9
-- ARROW_BROTLI_BUILD_SHA256_CHECKSUM: f9e8d81d0405ba66d181529af42a3354f838c939095ff99930da6aa9cdf6fe46
-- ARROW_BZIP2_BUILD_VERSION: 1.0.8
-- ARROW_BZIP2_BUILD_SHA256_CHECKSUM: ab5a03176ee106d3f0fa90e381da478ddae405918153cca248e682cd0c4a2269
-- ARROW_CARES_BUILD_VERSION: 1.17.2
-- ARROW_CARES_BUILD_SHA256_CHECKSUM: 4803c844ce20ce510ef0eb83f8ea41fa24ecaae9d280c468c582d2bb25b3913d
-- ARROW_CRC32C_BUILD_VERSION: 1.1.2
-- ARROW_CRC32C_BUILD_SHA256_CHECKSUM: ac07840513072b7fcebda6e821068aa04889018f24e10e46181068fb214d7e56
-- ARROW_GBENCHMARK_BUILD_VERSION: v1.6.0
-- ARROW_GBENCHMARK_BUILD_SHA256_CHECKSUM: 1f71c72ce08d2c1310011ea6436b31e39ccab8c2db94186d26657d41747c85d6
-- ARROW_GFLAGS_BUILD_VERSION: v2.2.2
-- ARROW_GFLAGS_BUILD_SHA256_CHECKSUM: 34af2f15cf7367513b352bdcd2493ab14ce43692d2dcd9dfc499492966c64dcf
-- ARROW_GLOG_BUILD_VERSION: v0.5.0
-- ARROW_GLOG_BUILD_SHA256_CHECKSUM: eede71f28371bf39aa69b45de23b329d37214016e2055269b3b5e7cfd40b59f5
-- ARROW_GOOGLE_CLOUD_CPP_BUILD_VERSION: v1.39.0
-- ARROW_GOOGLE_CLOUD_CPP_BUILD_SHA256_CHECKSUM: 73e4e840018b24bec2beb49e036a3c2d8c471d4dc4a18b9026ccc4d8ab8e78cc
-- ARROW_GRPC_BUILD_VERSION: v1.35.0
-- ARROW_GRPC_BUILD_SHA256_CHECKSUM: 27dd2fc5c9809ddcde8eb6fa1fa278a3486566dfc28335fca13eb8df8bd3b958
-- ARROW_GTEST_BUILD_VERSION: 1.11.0
-- ARROW_GTEST_BUILD_SHA256_CHECKSUM: b4870bf121ff7795ba20d20bcdd8627b8e088f2d1dab299a031c1034eddc93d5
-- ARROW_JEMALLOC_BUILD_VERSION: 5.2.1
-- ARROW_JEMALLOC_BUILD_SHA256_CHECKSUM: 34330e5ce276099e2e8950d9335db5a875689a4c6a56751ef3b1d8c537f887f6
-- ARROW_LZ4_BUILD_VERSION: 8f61d8eb7c6979769a484cde8df61ff7c4c77765
-- ARROW_LZ4_BUILD_SHA256_CHECKSUM: 5b072d848f2f93fddb97e1143e22c1bd7fa19fc8431ee69e21758190a88125b4
-- ARROW_MIMALLOC_BUILD_VERSION: v1.7.3
-- ARROW_MIMALLOC_BUILD_SHA256_CHECKSUM: 0f987bda01ca9df87ec90e9d98c63fa893ee61f3cca565e5ca5ed744fdcc5109
-- ARROW_NLOHMANN_JSON_BUILD_VERSION: v3.10.2
-- ARROW_NLOHMANN_JSON_BUILD_SHA256_CHECKSUM: 081ed0f9f89805c2d96335c3acfa993b39a0a5b4b4cef7edb68dd2210a13458c
-- ARROW_OPENTELEMETRY_BUILD_VERSION: v1.3.0
-- ARROW_OPENTELEMETRY_BUILD_SHA256_CHECKSUM: 6a4c43b9c9f753841ebc0fe2717325271f02e2a1d5ddd0b52735c35243629ab3
-- ARROW_OPENTELEMETRY_PROTO_BUILD_VERSION: v0.11.0
-- ARROW_OPENTELEMETRY_PROTO_BUILD_SHA256_CHECKSUM: 985367f8905e91018e636cbf0d83ab3f834b665c4f5899a27d10cae9657710e2
-- ARROW_ORC_BUILD_VERSION: 1.7.3
-- ARROW_ORC_BUILD_SHA256_CHECKSUM: 535c4d7588172e85b8fc941cd0575d67f2155a55e4cd65d87d5b194b0bb28a31
-- ARROW_PROTOBUF_BUILD_VERSION: v3.18.1
-- ARROW_PROTOBUF_BUILD_SHA256_CHECKSUM: b8ab9bbdf0c6968cf20060794bc61e231fae82aaf69d6e3577c154181991f576
-- ARROW_RAPIDJSON_BUILD_VERSION: 1a803826f1197b5e30703afe4b9c0e7dd48074f5
-- ARROW_RAPIDJSON_BUILD_SHA256_CHECKSUM: 0b6b780b6c534bfb0b23d29910bfe361e486bcfeaf106db8bc8995792072905a
-- ARROW_RE2_BUILD_VERSION: 2021-11-01
-- ARROW_RE2_BUILD_SHA256_CHECKSUM: 8c45f7fba029ab41f2a7e6545058d9eec94eef97ce70df58e92d85cfc08b4669
-- ARROW_SNAPPY_BUILD_VERSION: 1.1.9
-- ARROW_SNAPPY_BUILD_SHA256_CHECKSUM: 75c1fbb3d618dd3a0483bff0e26d0a92b495bbe5059c8b4f1c962b478b6e06e7
-- ARROW_SNAPPY_OLD_BUILD_VERSION: 1.1.8
-- ARROW_SNAPPY_OLD_BUILD_SHA256_CHECKSUM: 16b677f07832a612b0836178db7f374e414f94657c138e6993cbfc5dcc58651f
-- ARROW_SUBSTRAIT_BUILD_VERSION: e1b4c04a
-- ARROW_SUBSTRAIT_BUILD_SHA256_CHECKSUM: 65f83e5f5d979ede5fc8ac9f8bbaf793e0c72d9c415f1a162ba522f6d0bb5bbe
-- ARROW_THRIFT_BUILD_VERSION: 0.13.0
-- ARROW_THRIFT_BUILD_SHA256_CHECKSUM: 7ad348b88033af46ce49148097afe354d513c1fca7c607b59c33ebb6064b5179
-- ARROW_UTF8PROC_BUILD_VERSION: v2.7.0
-- ARROW_UTF8PROC_BUILD_SHA256_CHECKSUM: 4bb121e297293c0fd55f08f83afab6d35d48f0af4ecc07523ad8ec99aa2b12a1
-- ARROW_XSIMD_BUILD_VERSION: 7d1778c3b38d63db7cec7145d939f40bc5d859d1
-- ARROW_XSIMD_BUILD_SHA256_CHECKSUM: d861f4f3034550cdc62ad93fd60e8b0f2413a6ea49081c8698922b7b4f043ec6
-- ARROW_ZLIB_BUILD_VERSION: 1.2.12
-- ARROW_ZLIB_BUILD_SHA256_CHECKSUM: 91844808532e5ce316b3c010929493c0244f3d37593afd6de04f71821d5136d9
-- ARROW_ZSTD_BUILD_VERSION: v1.5.1
-- ARROW_ZSTD_BUILD_SHA256_CHECKSUM: dc05773342b28f11658604381afd22cb0a13e8ba17ff2bd7516df377060c18dd
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE
-- Checking for module 'thrift'
-- No package 'thrift' found
-- Could NOT find Thrift: Found unsuitable version "", but required is at least "0.11.0" (found THRIFT_LIB-NOTFOUND)
-- Looking for _M_ARM64
-- Looking for _M_ARM64 - not found
-- Looking for __SIZEOF_INT128__
-- Looking for __SIZEOF_INT128__ - found
CMake Warning at /usr/share/cmake3/Modules/FindBoost.cmake:743 (message):
Imported targets not available for Boost version
Call Stack (most recent call first):
/usr/share/cmake3/Modules/FindBoost.cmake:842 (_Boost_COMPONENT_DEPENDENCIES)
/usr/share/cmake3/Modules/FindBoost.cmake:1395 (_Boost_MISSING_DEPENDENCIES)
cmake_modules/FindBoostAlt.cmake:48 (find_package)
cmake_modules/ThirdpartyToolchain.cmake:237 (find_package)
cmake_modules/ThirdpartyToolchain.cmake:977 (resolve_dependency)
CMakeLists.txt:552 (include)
CMake Warning at /usr/share/cmake3/Modules/FindBoost.cmake:743 (message):
Imported targets not available for Boost version
Call Stack (most recent call first):
/usr/share/cmake3/Modules/FindBoost.cmake:842 (_Boost_COMPONENT_DEPENDENCIES)
/usr/share/cmake3/Modules/FindBoost.cmake:1395 (_Boost_MISSING_DEPENDENCIES)
cmake_modules/FindBoostAlt.cmake:48 (find_package)
cmake_modules/ThirdpartyToolchain.cmake:237 (find_package)
cmake_modules/ThirdpartyToolchain.cmake:977 (resolve_dependency)
CMakeLists.txt:552 (include)
-- Could NOT find Boost
-- Boost include dir: /tmp/RtmpkIthb7/file673d6ae58ef1/boost_ep-prefix/src/boost_ep
-- Boost libraries: boost_system_static;boost_filesystem_static
-- Could NOT find Snappy (missing: Snappy_LIB Snappy_INCLUDE_DIR)
-- Building snappy from source
-- Building without OpenSSL support. Minimum OpenSSL version 1.0.2 required.
CMake Error at cmake_modules/ThirdpartyToolchain.cmake:1349 (message):
Building thrift using ExternalProject requires at least CMake 3.10
Call Stack (most recent call first):
cmake_modules/ThirdpartyToolchain.cmake:183 (build_thrift)
cmake_modules/ThirdpartyToolchain.cmake:245 (build_dependency)
cmake_modules/ThirdpartyToolchain.cmake:1428 (resolve_dependency)
CMakeLists.txt:552 (include)
-- Configuring incomplete, errors occurred!
See also "/tmp/RtmpkIthb7/file673d6ae58ef1/CMakeFiles/CMakeOutput.log".
See also "/tmp/RtmpkIthb7/file673d6ae58ef1/CMakeFiles/CMakeError.log".
**** Error building Arrow C++.
------------------------- NOTE ---------------------------
There was an issue preparing the Arrow C++ libraries.
See https://arrow.apache.org/docs/r/articles/install.html
---------------------------------------------------------
ERROR: configuration failed for package ‘arrow’
* removing ‘/beegfs/home/users/b/username/R/x86_64-pc-linux-gnu-library/3.6/arrow’
The downloaded source packages are in
‘/tmp/RtmpV3AbtA/downloaded_packages’
Warning message:
In install.packages("arrow") :
installation of package ‘arrow’ had non-zero exit status
>
```
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[GitHub] [arrow] HeinzStuecke commented on issue #13425: Warning message: In install.packages("arrow") : installation of package ‘arrow’ had non-zero exit status
Posted by GitBox <gi...@apache.org>.
HeinzStuecke commented on issue #13425:
URL: https://github.com/apache/arrow/issues/13425#issuecomment-1164378109
Okidoki, so I did the following:
```
wget https://github.com/Kitware/CMake/releases/download/v3.23.2/cmake-3.23.2-linux-x86_64.tar.gz
gunzip cmake-3.23.2-linux-x86_64.tar.gz
export CMAKE=/cmake-3.23.2-linux-x86_64.tar
cmake --version
```
Which still returns `cmake version 2.8.12.2` and I seem to get the same error message when installing `arrow`
```txt
Using username "username".
username@gateway.hpc.university.org's password:
Access denied
username@gateway.hpc.university.org's password:
Access denied
username@gateway.hpc.university.org's password:
Access denied
username@gateway.hpc.university.org's password:
Last login: Thu Jun 23 13:23:12 2022 from see120.see.university.org
+------------------------------------------------------------------------------+
| Dear cluster users, |
| please consider following our announcements at |
| https://isis.university.org/mod/forum/view.php?id=556432 |
| |
| You may give us feedback to improve our service for you at |
| https://isis.university.org/mod/questionnaire/view.php?id=718187 |
| |
| In order to enrol to the course use the enrolment key 'rechenknecht' and |
| your UNIVERSITY account data to login, if necessary. |
+------------------------------------------------------------------------------+
/usr/bin/id: cannot find name for group ID 1242206
[username@frontend01 ~]$ cmake --version
cmake version 2.8.12.2
[username@frontend01 ~]$ ^C
[username@frontend01 ~]$ wget
wget: missing URL
Usage: wget [OPTION]... [URL]...
Try `wget --help' for more options.
[username@frontend01 ~]$ wget https://github.com/Kitware/CMake/releases/download/v3.23.2/cmake-3.23.2-linux-x86_64.tar.gz
--2022-06-23 14:44:19-- https://github.com/Kitware/CMake/releases/download/v3.23.2/cmake-3.23.2-linux-x86_64.tar.gz
Resolving github.com (github.com)... 140.82.121.4
Connecting to github.com (github.com)|140.82.121.4|:443... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://objects.githubusercontent.com/github-production-release-asset-2e65be/537699/6684c7d5-b152-4b45-8e09-ca27803d17b8?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20220623%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20220623T124420Z&X-Amz-Expires=300&X-Amz-Signature=2e1dbbf293c7e69c53aa4a352d3f8d519311b6e1965409dbc7d60abf5ce0113d&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=537699&response-content-disposition=attachment%3B%20filename%3Dcmake-3.23.2-linux-x86_64.tar.gz&response-content-type=application%2Foctet-stream [following]
--2022-06-23 14:44:20-- https://objects.githubusercontent.com/github-production-release-asset-2e65be/537699/6684c7d5-b152-4b45-8e09-ca27803d17b8?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20220623%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20220623T124420Z&X-Amz-Expires=300&X-Amz-Signature=2e1dbbf293c7e69c53aa4a352d3f8d519311b6e1965409dbc7d60abf5ce0113d&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=537699&response-content-disposition=attachment%3B%20filename%3Dcmake-3.23.2-linux-x86_64.tar.gz&response-content-type=application%2Foctet-stream
Resolving objects.githubusercontent.com (objects.githubusercontent.com)... 185.199.109.133, 185.199.110.133, 185.199.108.133, ...
Connecting to objects.githubusercontent.com (objects.githubusercontent.com)|185.199.109.133|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 46018921 (44M) [application/octet-stream]
Saving to: ‘cmake-3.23.2-linux-x86_64.tar.gz’
100%[======================================>] 46,018,921 15.5MB/s in 2.8s
2022-06-23 14:44:23 (15.5 MB/s) - ‘cmake-3.23.2-linux-x86_64.tar.gz’ saved [46018921/46018921]
[username@frontend01 ~]$ untar cmake-3.23.2-linux-x86_64.tar.gz bash: untar: command not found...
[username@frontend01 ~]$ gunzip cmake-3.23.2-linux-x86_64.tar.gz
[username@frontend01 ~]$ list
bash: list: command not found...
[username@frontend01 ~]$ -- list
bash: --: command not found...
[username@frontend01 ~]$ l--
bash: l--: command not found...
[username@frontend01 ~]$ --l
bash: --l: command not found...
[username@frontend01 ~]$ getwd
bash: getwd: command not found...
[username@frontend01 ~]$ pwd
/home/users/b/username
[username@frontend01 ~]$ ls
cmake-3.23.2-linux-x86_64.tar my_arrow_pkg.tar.gz R slurm-20999955.out
[username@frontend01 ~]$ dir
cmake-3.23.2-linux-x86_64.tar my_arrow_pkg.tar.gz R slurm-20999955.out
[username@frontend01 ~]$ export CMAKE=/path/to/bin/cmake
[username@frontend01 ~]$ module load R/3.6.1
[username@frontend01 ~]$ R
WARNING: ignoring environment value of R_HOME
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> install.packages(arrow)
Error in install.packages(arrow) : object 'arrow' not found
> install.packages("arrow")
Installing package into ‘/beegfs/home/users/b/username/R/x86_64-pc-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
Secure CRAN mirrors
1: 0-Cloud [https]
2: Australia (Canberra) [https]
3: Australia (Melbourne 1) [https]
4: Australia (Melbourne 2) [https]
5: Australia (Perth) [https]
6: Austria [https]
7: Belgium (Brussels) [https]
8: Brazil (PR) [https]
9: Brazil (RJ) [https]
10: Brazil (SP 1) [https]
11: Brazil (SP 2) [https]
12: Bulgaria [https]
13: Canada (MB) [https]
14: Canada (ON 3) [https]
15: Chile (Santiago) [https]
16: China (Beijing 2) [https]
17: China (Beijing 3) [https]
18: China (Hefei) [https]
19: China (Hong Kong) [https]
20: China (Guangzhou) [https]
21: China (Lanzhou) [https]
22: China (Nanjing) [https]
23: China (Shanghai 2) [https]
24: China (Shenzhen) [https]
25: Colombia (Cali) [https]
26: Costa Rica [https]
27: Cyprus [https]
28: Czech Republic [https]
29: Denmark [https]
30: East Asia [https]
31: Ecuador (Cuenca) [https]
32: Ecuador (Quito) [https]
33: Estonia [https]
34: France (Lyon 1) [https]
35: France (Lyon 2) [https]
36: France (Marseille) [https]
37: France (Paris 1) [https]
38: Germany (Erlangen) [https]
39: Germany (Leipzig) [https]
40: Germany (Göttingen) [https]
41: Germany (Münster) [https]
42: Germany (Regensburg) [https]
43: Greece [https]
44: Hungary [https]
45: Iceland [https]
46: India [https]
47: Indonesia (Jakarta) [https]
48: Iran (Mashhad) [https]
49: Italy (Milano) [https]
50: Italy (Padua) [https]
51: Japan (Tokyo) [https]
52: Korea (Gyeongsan-si) [https]
53: Korea (Seoul 1) [https]
54: Korea (Ulsan) [https]
55: Malaysia [https]
56: Mexico (Mexico City) [https]
57: Morocco [https]
58: Netherlands [https]
59: New Zealand [https]
60: Norway [https]
61: South Africa (Johannesburg) [https]
62: Spain (A Coruña) [https]
63: Spain (Madrid) [https]
64: Sweden (Borås) [https]
65: Sweden (Umeå) [https]
66: Switzerland [https]
67: Taiwan (Taipei) [https]
68: Turkey (Denizli) [https]
69: Turkey (Istanbul) [https]
70: Turkey (Mersin) [https]
71: UK (Bristol) [https]
72: UK (London 1) [https]
73: USA (IA) [https]
74: USA (KS) [https]
75: USA (MI) [https]
76: USA (OH) [https]
77: USA (OR) [https]
78: USA (TN) [https]
79: USA (TX 1) [https]
80: Uruguay [https]
81: (other mirrors)
Selection: 56
trying URL 'https://cran.itam.mx/src/contrib/arrow_8.0.0.tar.gz'
Content type 'application/x-gzip' length 4796875 bytes (4.6 MB)
==================================================
downloaded 4.6 MB
* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
*** Found local C++ source: 'tools/cpp'
*** Building libarrow from source
For a faster, more complete installation, set the environment variable NOT_CRAN=true before installing
See install vignette for details:
https://cran.r-project.org/web/packages/arrow/vignettes/install.html
**** arrow
**** Error building Arrow C++. Re-run with ARROW_R_DEV=true for debug information.
------------------------- NOTE ---------------------------
There was an issue preparing the Arrow C++ libraries.
See https://arrow.apache.org/docs/r/articles/install.html
---------------------------------------------------------
ERROR: configuration failed for package ‘arrow’
* removing ‘/beegfs/home/users/b/username/R/x86_64-pc-linux-gnu-library/3.6/arrow’
The downloaded source packages are in
‘/tmp/Rtmpsp8zid/downloaded_packages’
Warning message:
In install.packages("arrow") :
installation of package ‘arrow’ had non-zero exit status
> Using username "username".
[username@frontend01 ~]$ cmake --version
cmake version 2.8.12.2
[username@frontend01 ~]$ ^C
[username@frontend01 ~]$ wget
wget: missing URL
Error: unexpected symbol in "Using username"
> username@gateway.hpc.university.org's password:
+ Access denied
+ username@gateway.hpc.university.org's password:
Error: unexpected string constant in:
"Access denied
username@gateway.hpc.university.org'"
> Access denied
Error: unexpected symbol in "Access denied"
> username@gateway.hpc.university.org's password:
--2022-06-23 14:44:19-- https://github.com+
> quit()
Save workspace image? [y/n/c]: n
[username@frontend01 ~]$ export CMAKE=/my_arrow_pkg.tar.gz
[username@frontend01 ~]$ cmake --version
cmake version 2.8.12.2
[username@frontend01 ~]$ export CMAKE=/my_arrow_pkg.tar.gz
[username@frontend01 ~]$ ^C
[username@frontend01 ~]$ ^C
[username@frontend01 ~]$ dir
cmake-3.23.2-linux-x86_64.tar my_arrow_pkg.tar.gz R slurm-20999955.out
[username@frontend01 ~]$ export CMAKE=/cmake-3.23.2-linux-x86_64.tar
[username@frontend01 ~]$ cmake --version
cmake version 2.8.12.2
[username@frontend01 ~]$ ^C
[username@frontend01 ~]$ ^C
[username@frontend01 ~]$ R
WARNING: ignoring environment value of R_HOME
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> install.packages("arrow")
Installing package into ‘/beegfs/home/users/b/username/R/x86_64-pc-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
Secure CRAN mirrors
1: 0-Cloud [https]
2: Australia (Canberra) [https]
3: Australia (Melbourne 1) [https]
4: Australia (Melbourne 2) [https]
5: Australia (Perth) [https]
6: Austria [https]
7: Belgium (Brussels) [https]
8: Brazil (PR) [https]
9: Brazil (RJ) [https]
10: Brazil (SP 1) [https]
11: Brazil (SP 2) [https]
12: Bulgaria [https]
13: Canada (MB) [https]
14: Canada (ON 3) [https]
15: Chile (Santiago) [https]
16: China (Beijing 2) [https]
17: China (Beijing 3) [https]
18: China (Hefei) [https]
19: China (Hong Kong) [https]
20: China (Guangzhou) [https]
21: China (Lanzhou) [https]
22: China (Nanjing) [https]
23: China (Shanghai 2) [https]
24: China (Shenzhen) [https]
25: Colombia (Cali) [https]
26: Costa Rica [https]
27: Cyprus [https]
28: Czech Republic [https]
29: Denmark [https]
30: East Asia [https]
31: Ecuador (Cuenca) [https]
32: Ecuador (Quito) [https]
33: Estonia [https]
34: France (Lyon 1) [https]
35: France (Lyon 2) [https]
36: France (Marseille) [https]
37: France (Paris 1) [https]
38: Germany (Erlangen) [https]
39: Germany (Leipzig) [https]
40: Germany (Göttingen) [https]
41: Germany (Münster) [https]
42: Germany (Regensburg) [https]
43: Greece [https]
44: Hungary [https]
45: Iceland [https]
46: India [https]
47: Indonesia (Jakarta) [https]
48: Iran (Mashhad) [https]
49: Italy (Milano) [https]
50: Italy (Padua) [https]
51: Japan (Tokyo) [https]
52: Korea (Gyeongsan-si) [https]
53: Korea (Seoul 1) [https]
54: Korea (Ulsan) [https]
55: Malaysia [https]
56: Mexico (Mexico City) [https]
57: Morocco [https]
58: Netherlands [https]
59: New Zealand [https]
60: Norway [https]
61: South Africa (Johannesburg) [https]
62: Spain (A Coruña) [https]
63: Spain (Madrid) [https]
64: Sweden (Borås) [https]
65: Sweden (Umeå) [https]
66: Switzerland [https]
67: Taiwan (Taipei) [https]
68: Turkey (Denizli) [https]
69: Turkey (Istanbul) [https]
70: Turkey (Mersin) [https]
71: UK (Bristol) [https]
72: UK (London 1) [https]
73: USA (IA) [https]
74: USA (KS) [https]
75: USA (MI) [https]
76: USA (OH) [https]
77: USA (OR) [https]
78: USA (TN) [https]
79: USA (TX 1) [https]
80: Uruguay [https]
81: (other mirrors)
Selection: 5
trying URL 'https://cran.curtin.edu.au/src/contrib/arrow_8.0.0.tar.gz'
Content type 'application/x-gzip' length 4796875 bytes (4.6 MB)
==================================================
downloaded 4.6 MB
* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
*** Found local C++ source: 'tools/cpp'
*** Building libarrow from source
For a faster, more complete installation, set the environment variable NOT_CRAN=true before installing
See install vignette for details:
https://cran.r-project.org/web/packages/arrow/vignettes/install.html
**** arrow
**** Error building Arrow C++. Re-run with ARROW_R_DEV=true for debug information.
------------------------- NOTE ---------------------------
There was an issue preparing the Arrow C++ libraries.
See https://arrow.apache.org/docs/r/articles/install.html
---------------------------------------------------------
ERROR: configuration failed for package ‘arrow’
* removing ‘/beegfs/home/users/b/username/R/x86_64-pc-linux-gnu-library/3.6/arrow’
The downloaded source packages are in
‘/tmp/Rtmpt8stMG/downloaded_packages’
Warning message:
In install.packages("arrow") :
installation of package ‘arrow’ had non-zero exit status
>
```
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[GitHub] [arrow] HeinzStuecke commented on issue #13425: Warning message: In install.packages("arrow") : installation of package ‘arrow’ had non-zero exit status
Posted by GitBox <gi...@apache.org>.
HeinzStuecke commented on issue #13425:
URL: https://github.com/apache/arrow/issues/13425#issuecomment-1164364544
Thank you for your response. `cmake --version` returns `cmake version 2.8.12.2`.
I also ran `wget https://github.com/Kitware/CMake/releases/download/v3.23.2/cmake-3.23.2-linux-x86_64.tar.gz` and then `untar cmake-3.23.2-linux-x86_64.tar.gz` but the latter returns `bash: untar: command not found ...`.
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[GitHub] [arrow] HeinzStuecke commented on issue #13425: Warning message: In install.packages("arrow") : installation of package ‘arrow’ had non-zero exit status
Posted by GitBox <gi...@apache.org>.
HeinzStuecke commented on issue #13425:
URL: https://github.com/apache/arrow/issues/13425#issuecomment-1164399454
Seems like I've not properly extracted `cmake-3.23.2-linux-x86_64.tar.gz` above. I now ran `$ tar -xvf cmake-3.23.2-linux-x86_64.tar` and then `export CMAKE=/cmake-3.23.2-linux-x86_64`. However, `cmake --version` still returns `cmake version 2.8.12.2`.
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[GitHub] [arrow] nealrichardson commented on issue #13425: Warning message: In install.packages("arrow") : installation of package ‘arrow’ had non-zero exit status
Posted by GitBox <gi...@apache.org>.
nealrichardson commented on issue #13425:
URL: https://github.com/apache/arrow/issues/13425#issuecomment-1164454107
> Seems like I've not properly extracted `cmake-3.23.2-linux-x86_64.tar.gz` above. I now ran `$ tar -xvf cmake-3.23.2-linux-x86_64.tar` and then `export CMAKE=/cmake-3.23.2-linux-x86_64`.
Assuming you've extracted it in your current working directory, you'll want `export CMAKE=$(pwd)/cmake-3.23.2-linux-x86_64/bin/cmake`
> However, `cmake --version` still returns `cmake version 2.8.12.2`.
Right. The `CMAKE` env var is for the arrow R package build script; `cmake` won't be affected by it.
Also, my mistake before, it looks like you have a `cmake3` installed, which is version 3.6.3. Can you show me what `R -e 'system("cmake3 --version", intern = TRUE, ignore.stderr = TRUE)'` returns?
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[GitHub] [arrow] edponce commented on issue #13425: Warning message: In install.packages("arrow") : installation of package ‘arrow’ had non-zero exit status
Posted by GitBox <gi...@apache.org>.
edponce commented on issue #13425:
URL: https://github.com/apache/arrow/issues/13425#issuecomment-1196243219
@HeinzStuecke where you able to install R Arrow after updating CMake to version 3.10 or higher?
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[GitHub] [arrow] nealrichardson commented on issue #13425: Warning message: In install.packages("arrow") : installation of package ‘arrow’ had non-zero exit status
Posted by GitBox <gi...@apache.org>.
nealrichardson commented on issue #13425:
URL: https://github.com/apache/arrow/issues/13425#issuecomment-1164345783
It looks like the error is:
```
CMake Error at cmake_modules/ThirdpartyToolchain.cmake:1349 (message):
Building thrift using ExternalProject requires at least CMake 3.10
```
but your system only has cmake 3.6.3. We try to check for that, but apparently the check in https://github.com/apache/arrow/blob/master/r/tools/nixlibs.R#L407-L432 isn't detecting that correctly. Could you share what `cmake --version` says?
To work around this, you can download and untar the latest cmake release from https://github.com/Kitware/CMake/releases/download/v3.23.2/cmake-3.23.2-linux-x86_64.tar.gz, then `export CMAKE=/path/to/bin/cmake`, wherever that ends up when you extract it.
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[GitHub] [arrow] HeinzStuecke commented on issue #13425: Warning message: In install.packages("arrow") : installation of package ‘arrow’ had non-zero exit status
Posted by GitBox <gi...@apache.org>.
HeinzStuecke commented on issue #13425:
URL: https://github.com/apache/arrow/issues/13425#issuecomment-1164462352
Thank you for your effort. `R -e 'system("cmake3 --version", intern = TRUE, ignore.stderr = TRUE)'` returns:
```
[username@frontend01 ~]$ R -e 'system("cmake3 --version", intern = TRUE, ignore. stderr = TRUE)'
WARNING: ignoring environment value of R_HOME
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> system("cmake3 --version", intern = TRUE, ignore.stderr = TRUE)
[1] "cmake3 version 3.6.3"
[2] ""
[3] "CMake suite maintained and supported by Kitware (kitware.com/cmake)."
>
>
```
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