Loading AE AggregatePlaintextFastUMLSProcessor.xml Error

[Katipomu Satheesh <sa...@gmail.com>]

Hi cTAKEuser team,

I have imported cTAKES developer version in eclipse. After that I am trying to load analysis engine "AggregatePlaintextFASTUMLSProcessor.xml" but facing below error. I am using UIMAv3 plugins but still facing the error.
If I manually build ctakes-drug-ner project, then loading is successful but while running I am facing another like below. 

Note: As part of other issue workaround  I have added ctakes-drug-ner as dependency in crakes-clinical-pipeline pom.xml as suggested in one of mail lists.

Error While Running AE:
05:58:28.582 - 16: org.apache.uima.tools.cvd.MainFrame.handleException(668): SEVERE: jcasType
java.lang.NoSuchFieldError: jcasType
	at org.apache.ctakes.typesystem.type.textspan.Segment.setId(Segment.java:97)
	at org.apache.ctakes.core.ae.SimpleSegmentAnnotator.process(SimpleSegmentAnnotator.java:69)
	at org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48)
	at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.lambda$callProcessMethod$3(AnalysisEngineImplBase.java:626)
	at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.withContexts(AnalysisEngineImplBase.java:643)
	at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.callProcessMethod(AnalysisEngineImplBase.java:623)
	at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:381)
	at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:299)
	at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.processUntilNextOutputCas(ASB_impl.java:570)
	at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.<init>(ASB_impl.java:412)
	at org.apache.uima.analysis_engine.asb.impl.ASB_impl.process(ASB_impl.java:344)


Error While Loading AE:
05:51:57.613 - 16: org.apache.uima.tools.cvd.MainFrame.handleException(666): SEVERE: The JCas cannot be initialized.  The following errors occurred: 
JCas Class "org.apache.ctakes.drugner.type.ChunkAnnotation", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-drug-ner/target/classes/org/apache/ctakes/drugner/type/ChunkAnnotation.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.drugner.type.DecimalStrengthAnnotation", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-drug-ner/target/classes/org/apache/ctakes/drugner/type/DecimalStrengthAnnotation.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.drugner.type.DosagesAnnotation", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-drug-ner/target/classes/org/apache/ctakes/drugner/type/DosagesAnnotation.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-drug-ner/target/classes/org/apache/ctakes/drugner/type/DrugChangeStatusAnnotation.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.drugner.type.DrugMentionAnnotation", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-drug-ner/target/classes/org/apache/ctakes/drugner/type/DrugMentionAnnotation.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.drugner.type.DurationAnnotation", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-drug-ner/target/classes/org/apache/ctakes/drugner/type/DurationAnnotation.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.drugner.type.FormAnnotation", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-drug-ner/target/classes/org/apache/ctakes/drugner/type/FormAnnotation.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.drugner.type.FractionStrengthAnnotation", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-drug-ner/target/classes/org/apache/ctakes/drugner/type/FractionStrengthAnnotation.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.drugner.type.FrequencyAnnotation", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-drug-ner/target/classes/org/apache/ctakes/drugner/type/FrequencyAnnotation.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.drugner.type.FrequencyUnitAnnotation", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-drug-ner/target/classes/org/apache/ctakes/drugner/type/FrequencyUnitAnnotation.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.drugner.type.RangeStrengthAnnotation", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-drug-ner/target/classes/org/apache/ctakes/drugner/type/RangeStrengthAnnotation.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.drugner.type.RouteAnnotation", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-drug-ner/target/classes/org/apache/ctakes/drugner/type/RouteAnnotation.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.drugner.type.StrengthAnnotation", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-drug-ner/target/classes/org/apache/ctakes/drugner/type/StrengthAnnotation.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.drugner.type.StrengthUnitAnnotation", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-drug-ner/target/classes/org/apache/ctakes/drugner/type/StrengthUnitAnnotation.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.drugner.type.SubSectionAnnotation", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-drug-ner/target/classes/org/apache/ctakes/drugner/type/SubSectionAnnotation.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.drugner.type.SuffixStrengthAnnotation", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-drug-ner/target/classes/org/apache/ctakes/drugner/type/SuffixStrengthAnnotation.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.BaseToken", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/BaseToken.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.ContractionToken", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/ContractionToken.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.NewlineToken", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/NewlineToken.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.NumToken", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/NumToken.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.PunctuationToken", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/PunctuationToken.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.SymbolToken", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/SymbolToken.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.WordToken", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/WordToken.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.Chunk", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/Chunk.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.INTJ", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/INTJ.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.LST", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/LST.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.NP", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/NP.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.O", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/O.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.PP", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/PP.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.PRT", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/PRT.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.SBAR", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/SBAR.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.UCP", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/UCP.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.VP", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/VP.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.ADJP", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/ADJP.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.ADVP", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/ADVP.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.CONJP", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/CONJP.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/ConllDependencyNode.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.TreebankNode", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/TreebankNode.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/TerminalTreebankNode.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.syntax.TopTreebankNode", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/syntax/TopTreebankNode.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/temporary/assertion/AssertionCuePhraseAnnotation.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/textsem/IdentifiedAnnotation.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.textsem.Markable", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/textsem/Markable.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).
JCas Class "org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation", loaded from "file:/Users/user/cTAKES/ctakes/ctakes-type-system/target/classes/org/apache/ctakes/typesystem/type/textsem/MeasurementAnnotation.class", is missing required constructor; likely cause is wrong version (UIMA version 3 or later JCas required).


Regards,
Satheesh K