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Posted to reviews@spark.apache.org by lin0Xu <gi...@git.apache.org> on 2015/12/02 10:26:40 UTC
[GitHub] spark pull request: Branch 1.5
GitHub user lin0Xu opened a pull request:
https://github.com/apache/spark/pull/10098
Branch 1.5
You can merge this pull request into a Git repository by running:
$ git pull https://github.com/apache/spark branch-1.5
Alternatively you can review and apply these changes as the patch at:
https://github.com/apache/spark/pull/10098.patch
To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:
This closes #10098
----
commit 3ccd2e647a3c3039b1959a1e39c24cbe4fc6d9c5
Author: Dharmesh Kakadia <dh...@users.noreply.github.com>
Date: 2015-08-28T08:38:35Z
typo in comment
Author: Dharmesh Kakadia <dh...@users.noreply.github.com>
Closes #8497 from dharmeshkakadia/patch-2.
(cherry picked from commit 71a077f6c16c8816eae13341f645ba50d997f63d)
Signed-off-by: Sean Owen <so...@cloudera.com>
commit 0cd49bacc8ec344a60bc2f5bf4c90cfd8c79abed
Author: Yuhao Yang <hh...@gmail.com>
Date: 2015-08-28T15:00:44Z
[SPARK-9890] [DOC] [ML] User guide for CountVectorizer
jira: https://issues.apache.org/jira/browse/SPARK-9890
document with Scala and java examples
Author: Yuhao Yang <hh...@gmail.com>
Closes #8487 from hhbyyh/cvDoc.
(cherry picked from commit e2a843090cb031f6aa774f6d9c031a7f0f732ee1)
Signed-off-by: Xiangrui Meng <me...@databricks.com>
commit 0abbc181380e644374f4217ee84b76fae035aee2
Author: Luciano Resende <lr...@apache.org>
Date: 2015-08-28T16:13:21Z
[SPARK-8952] [SPARKR] - Wrap normalizePath calls with suppressWarnings
This is based on davies comment on SPARK-8952 which suggests to only call normalizePath() when path starts with '~'
Author: Luciano Resende <lr...@apache.org>
Closes #8343 from lresende/SPARK-8952.
(cherry picked from commit 499e8e154bdcc9d7b2f685b159e0ddb4eae48fe4)
Signed-off-by: Shivaram Venkataraman <sh...@cs.berkeley.edu>
commit ccda27a9beb97b11c2522a0700165fd849af44b1
Author: Josh Rosen <jo...@databricks.com>
Date: 2015-08-28T18:51:42Z
[SPARK-10325] Override hashCode() for public Row
This commit fixes an issue where the public SQL `Row` class did not override `hashCode`, causing it to violate the hashCode() + equals() contract. To fix this, I simply ported the `hashCode` implementation from the 1.4.x version of `Row`.
Author: Josh Rosen <jo...@databricks.com>
Closes #8500 from JoshRosen/SPARK-10325 and squashes the following commits:
51ffea1 [Josh Rosen] Override hashCode() for public Row.
(cherry picked from commit d3f87dc39480f075170817bbd00142967a938078)
Signed-off-by: Michael Armbrust <mi...@databricks.com>
Conflicts:
sql/catalyst/src/main/scala/org/apache/spark/sql/Row.scala
commit 9c58f6441e353fcb4402e1f36d826937d4801298
Author: Shuo Xiang <sx...@pinterest.com>
Date: 2015-08-28T20:09:13Z
[SPARK-10336][example] fix not being able to set intercept in LR example
`fitIntercept` is a command line option but not set in the main program.
dbtsai
Author: Shuo Xiang <sx...@pinterest.com>
Closes #8510 from coderxiang/intercept and squashes the following commits:
57c9b7d [Shuo Xiang] fix not being able to set intercept in LR example
(cherry picked from commit 45723214e694b9a440723e9504c562e6393709f3)
Signed-off-by: DB Tsai <db...@netflix.com>
commit 7f014809de25d1d491c46e09fd88ef6c3d5d0e1b
Author: Xiangrui Meng <me...@databricks.com>
Date: 2015-08-28T20:53:31Z
[SPARK-9671] [MLLIB] re-org user guide and add migration guide
This PR updates the MLlib user guide and adds migration guide for 1.4->1.5.
* merge migration guide for `spark.mllib` and `spark.ml` packages
* remove dependency section from `spark.ml` guide
* move the paragraph about `spark.mllib` and `spark.ml` to the top and recommend `spark.ml`
* move Sam's talk to footnote to make the section focus on dependencies
Minor changes to code examples and other wording will be in a separate PR.
jkbradley srowen feynmanliang
Author: Xiangrui Meng <me...@databricks.com>
Closes #8498 from mengxr/SPARK-9671.
(cherry picked from commit 88032ecaf0455886aed7a66b30af80dae7f6cff7)
Signed-off-by: Xiangrui Meng <me...@databricks.com>
commit 02e10d2df40e18a14c4c388c41699b5b258e57ac
Author: Davies Liu <da...@databricks.com>
Date: 2015-08-28T21:38:20Z
[SPARK-10323] [SQL] fix nullability of In/InSet/ArrayContain
After this PR, In/InSet/ArrayContain will return null if value is null, instead of false. They also will return null even if there is a null in the set/array.
Author: Davies Liu <da...@databricks.com>
Closes #8492 from davies/fix_in.
(cherry picked from commit bb7f35239385ec74b5ee69631b5480fbcee253e4)
Signed-off-by: Davies Liu <da...@gmail.com>
commit df4a2e68ad4117ffadd63f5032ff8ca4972c2772
Author: Marcelo Vanzin <va...@cloudera.com>
Date: 2015-08-28T22:57:27Z
[SPARK-10326] [YARN] Fix app submission on windows.
Author: Marcelo Vanzin <va...@cloudera.com>
Closes #8493 from vanzin/SPARK-10326.
commit b7aab1d1838bdffdf29923fc0f18eb04e582957e
Author: felixcheung <fe...@hotmail.com>
Date: 2015-08-29T01:35:01Z
[SPARK-9803] [SPARKR] Add subset and transform + tests
Add subset and transform
Also reorganize `[` & `[[` to subset instead of select
Note: for transform, transform is very similar to mutate. Spark doesn't seem to replace existing column with the name in mutate (ie. `mutate(df, age = df$age + 2)` - returned DataFrame has 2 columns with the same name 'age'), so therefore not doing that for now in transform.
Though it is clearly stated it should replace column with matching name (should I open a JIRA for mutate/transform?)
Author: felixcheung <fe...@hotmail.com>
Closes #8503 from felixcheung/rsubset_transform.
(cherry picked from commit 2a4e00ca4d4e7a148b4ff8ce0ad1c6d517cee55f)
Signed-off-by: Shivaram Venkataraman <sh...@cs.berkeley.edu>
commit 69d856527d50d01624feaf1461af2d7bff03a668
Author: martinzapletal <za...@email.cz>
Date: 2015-08-29T04:03:48Z
[SPARK-9910] [ML] User guide for train validation split
Author: martinzapletal <za...@email.cz>
Closes #8377 from zapletal-martin/SPARK-9910.
(cherry picked from commit e8ea5bafee9ca734edf62021145d0c2d5491cba8)
Signed-off-by: Xiangrui Meng <me...@databricks.com>
commit d17316f8b6286c0f8b40cfd86b14abebba6ac6af
Author: GuoQiang Li <wi...@qq.com>
Date: 2015-08-29T20:20:22Z
[SPARK-10350] [DOC] [SQL] Removed duplicated option description from SQL guide
Author: GuoQiang Li <wi...@qq.com>
Closes #8520 from witgo/SPARK-10350.
(cherry picked from commit 5369be806848f43cb87c76504258c4e7de930c90)
Signed-off-by: Michael Armbrust <mi...@databricks.com>
commit a49ad67a5458fc88e7faefa50fa88783d8fbe3c6
Author: Michael Armbrust <mi...@databricks.com>
Date: 2015-08-29T20:26:01Z
[SPARK-10344] [SQL] Add tests for extraStrategies
Actually using this API requires access to a lot of classes that we might make private by accident. I've added some tests to prevent this.
Author: Michael Armbrust <mi...@databricks.com>
Closes #8516 from marmbrus/extraStrategiesTests.
(cherry picked from commit 5c3d16a9b91bb9a458d3ba141f7bef525cf3d285)
Signed-off-by: Yin Huai <yh...@databricks.com>
commit 7c65078948c48ed6339452191fcf71b564ad0e8d
Author: wangwei <wa...@huawei.com>
Date: 2015-08-29T20:29:50Z
[SPARK-10226] [SQL] Fix exclamation mark issue in SparkSQL
When I tested the latest version of spark with exclamation mark, I got some errors. Then I reseted the spark version and found that commit id "a2409d1c8e8ddec04b529ac6f6a12b5993f0eeda" brought the bug. With jline version changing from 0.9.94 to 2.12 after this commit, exclamation mark would be treated as a special character in ConsoleReader.
Author: wangwei <wa...@huawei.com>
Closes #8420 from small-wang/jline-SPARK-10226.
(cherry picked from commit 277148b285748e863f2b9fdf6cf12963977f91ca)
Signed-off-by: Michael Armbrust <mi...@databricks.com>
commit d178e1e77f6d19ae9dafc7b0e26ae5784b288e42
Author: Josh Rosen <jo...@databricks.com>
Date: 2015-08-29T20:36:25Z
[SPARK-10330] Use SparkHadoopUtil TaskAttemptContext reflection methods in more places
SparkHadoopUtil contains methods that use reflection to work around TaskAttemptContext binary incompatibilities between Hadoop 1.x and 2.x. We should use these methods in more places.
Author: Josh Rosen <jo...@databricks.com>
Closes #8499 from JoshRosen/use-hadoop-reflection-in-more-places.
(cherry picked from commit 6a6f3c91ee1f63dd464eb03d156d02c1a5887d88)
Signed-off-by: Michael Armbrust <mi...@databricks.com>
commit 3a61e103b8c480596fe38e558d7e4449ec0dc391
Author: Yin Huai <yh...@databricks.com>
Date: 2015-08-29T23:39:40Z
[SPARK-10339] [SPARK-10334] [SPARK-10301] [SQL] Partitioned table scan can OOM driver and throw a better error message when users need to enable parquet schema merging
This fixes the problem that scanning partitioned table causes driver have a high memory pressure and takes down the cluster. Also, with this fix, we will be able to correctly show the query plan of a query consuming partitioned tables.
https://issues.apache.org/jira/browse/SPARK-10339
https://issues.apache.org/jira/browse/SPARK-10334
Finally, this PR squeeze in a "quick fix" for SPARK-10301. It is not a real fix, but it just throw a better error message to let user know what to do.
Author: Yin Huai <yh...@databricks.com>
Closes #8515 from yhuai/partitionedTableScan.
(cherry picked from commit 097a7e36e0bf7290b1879331375bacc905583bd3)
Signed-off-by: Michael Armbrust <mi...@databricks.com>
commit 8071f6edff98e803e4ae6a07973fc0311aa6fef6
Author: Xiangrui Meng <me...@databricks.com>
Date: 2015-08-30T06:26:23Z
[SPARK-10348] [MLLIB] updates ml-guide
* replace `ML Dataset` by `DataFrame` to unify the abstraction
* ML algorithms -> pipeline components to describe the main concept
* remove Scala API doc links from the main guide
* `Section Title` -> `Section tile` to be consistent with other section titles in MLlib guide
* modified lines break at 100 chars or periods
jkbradley feynmanliang
Author: Xiangrui Meng <me...@databricks.com>
Closes #8517 from mengxr/SPARK-10348.
(cherry picked from commit 905fbe498bdd29116468628e6a2a553c1fd57165)
Signed-off-by: Xiangrui Meng <me...@databricks.com>
commit 1d40136ee68d8f2e008c7eed93495d6690ce40ba
Author: Xiangrui Meng <me...@databricks.com>
Date: 2015-08-30T06:57:09Z
[SPARK-10331] [MLLIB] Update example code in ml-guide
* The example code was added in 1.2, before `createDataFrame`. This PR switches to `createDataFrame`. Java code still uses JavaBean.
* assume `sqlContext` is available
* fix some minor issues from previous code review
jkbradley srowen feynmanliang
Author: Xiangrui Meng <me...@databricks.com>
Closes #8518 from mengxr/SPARK-10331.
(cherry picked from commit ca69fc8efda8a3e5442ffa16692a2b1eb86b7673)
Signed-off-by: Xiangrui Meng <me...@databricks.com>
commit 42a81a608be369fe94c3f7af61bd2281f3d1e6b9
Author: Burak Yavuz <br...@gmail.com>
Date: 2015-08-30T19:21:15Z
[SPARK-10353] [MLLIB] BLAS gemm not scaling when beta = 0.0 for some subset of matrix multiplications
mengxr jkbradley rxin
It would be great if this fix made it into RC3!
Author: Burak Yavuz <br...@gmail.com>
Closes #8525 from brkyvz/blas-scaling.
(cherry picked from commit 8d2ab75d3b71b632f2394f2453af32f417cb45e5)
Signed-off-by: Xiangrui Meng <me...@databricks.com>
commit bf5b2f26b8f440ca734b06845d6e9c67cd28f4fd
Author: Xiangrui Meng <me...@databricks.com>
Date: 2015-08-31T06:20:03Z
[SPARK-100354] [MLLIB] fix some apparent memory issues in k-means|| initializaiton
* do not cache first cost RDD
* change following cost RDD cache level to MEMORY_AND_DISK
* remove Vector wrapper to save a object per instance
Further improvements will be addressed in SPARK-10329
cc: yu-iskw HuJiayin
Author: Xiangrui Meng <me...@databricks.com>
Closes #8526 from mengxr/SPARK-10354.
(cherry picked from commit f0f563a3c43fc9683e6920890cce44611c0c5f4b)
Signed-off-by: Xiangrui Meng <me...@databricks.com>
commit 33ce274cdf7538b5816f1a400b2fad394ec2a056
Author: zsxwing <zs...@gmail.com>
Date: 2015-08-31T19:19:11Z
[SPARK-10369] [STREAMING] Don't remove ReceiverTrackingInfo when deregisterReceivering since we may reuse it later
`deregisterReceiver` should not remove `ReceiverTrackingInfo`. Otherwise, it will throw `java.util.NoSuchElementException: key not found` when restarting it.
Author: zsxwing <zs...@gmail.com>
Closes #8538 from zsxwing/SPARK-10369.
(cherry picked from commit 4a5fe091658b1d06f427e404a11a84fc84f953c5)
Signed-off-by: Tathagata Das <ta...@gmail.com>
commit 1c752b8b5c7090936b5c2ca94e8fb47c4f570d69
Author: Davies Liu <da...@databricks.com>
Date: 2015-08-31T22:55:22Z
[SPARK-10341] [SQL] fix memory starving in unsafe SMJ
In SMJ, the first ExternalSorter could consume all the memory before spilling, then the second can not even acquire the first page.
Before we have a better memory allocator, SMJ should call prepare() before call any compute() of it's children.
cc rxin JoshRosen
Author: Davies Liu <da...@databricks.com>
Closes #8511 from davies/smj_memory.
(cherry picked from commit 540bdee93103a73736d282b95db6a8cda8f6a2b1)
Signed-off-by: Reynold Xin <rx...@databricks.com>
commit 908e37bcc10132bb2aa7f80ae694a9df6e40f31a
Author: Patrick Wendell <pw...@gmail.com>
Date: 2015-08-31T22:57:42Z
Preparing Spark release v1.5.0-rc3
commit 2b270a166d6bd5b42399400924c576c9996bfc10
Author: Patrick Wendell <pw...@gmail.com>
Date: 2015-08-31T22:57:49Z
Preparing development version 1.5.1-SNAPSHOT
commit d19bccd872ccf22b43d3d1e66709413e8d44ec9d
Author: Sean Owen <so...@cloudera.com>
Date: 2015-09-01T19:06:01Z
[SPARK-10398] [DOCS] Migrate Spark download page to use new lua mirroring scripts
Migrate Apache download closer.cgi refs to new closer.lua
This is the bit of the change that affects the project docs; I'm implementing the changes to the Apache site separately.
Author: Sean Owen <so...@cloudera.com>
Closes #8557 from srowen/SPARK-10398.
(cherry picked from commit 3f63bd6023edcc9af268933a235f34e10bc3d2ba)
Signed-off-by: Sean Owen <so...@cloudera.com>
commit 30efa96af8132cd0616859fdf440a5b50bdfad3b
Author: 0x0FFF <pr...@gmail.com>
Date: 2015-09-01T21:58:49Z
[SPARK-10392] [SQL] Pyspark - Wrong DateType support on JDBC connection
This PR addresses issue [SPARK-10392](https://issues.apache.org/jira/browse/SPARK-10392)
The problem is that for "start of epoch" date (01 Jan 1970) PySpark class DateType returns 0 instead of the `datetime.date` due to implementation of its return statement
Issue reproduction on master:
```
>>> from pyspark.sql.types import *
>>> a = DateType()
>>> a.fromInternal(0)
0
>>> a.fromInternal(1)
datetime.date(1970, 1, 2)
```
Author: 0x0FFF <pr...@gmail.com>
Closes #8556 from 0x0FFF/SPARK-10392.
commit 2fce5d880974c0a3cd07536d1ce226df8e635bb4
Author: Yin Huai <yh...@databricks.com>
Date: 2015-09-03T04:00:13Z
[SPARK-10422] [SQL] String column in InMemoryColumnarCache needs to override clone method
https://issues.apache.org/jira/browse/SPARK-10422
Author: Yin Huai <yh...@databricks.com>
Closes #8578 from yhuai/SPARK-10422.
(cherry picked from commit 03f3e91ff21707d8a1c7057a00f1b1cd8b743e3f)
Signed-off-by: Davies Liu <da...@gmail.com>
commit b846a9dc3f74af235111b6313900016c6ccac1b9
Author: Davies Liu <da...@databricks.com>
Date: 2015-09-03T05:15:54Z
[SPARK-10379] preserve first page in UnsafeShuffleExternalSorter
Author: Davies Liu <da...@databricks.com>
Closes #8543 from davies/preserve_page.
(cherry picked from commit 62b4690d6b3016f41292b640ac28644ef31e299d)
Signed-off-by: Andrew Or <an...@databricks.com>
commit 94404ee53f382afae345ce2a30c0df657f00eee5
Author: zsxwing <zs...@gmail.com>
Date: 2015-09-03T05:17:39Z
[SPARK-10411] [SQL] Move visualization above explain output and hide explain by default
New screenshots after this fix:
<img width="627" alt="s1" src="https://cloud.githubusercontent.com/assets/1000778/9625782/4b2dba36-518b-11e5-9104-c713ff026e3d.png">
Default:
<img width="462" alt="s2" src="https://cloud.githubusercontent.com/assets/1000778/9625817/92366e50-518b-11e5-9981-cdfb774d66b8.png">
After clicking `+details`:
<img width="377" alt="s3" src="https://cloud.githubusercontent.com/assets/1000778/9625784/4ba24342-518b-11e5-8522-846a16a95d44.png">
Author: zsxwing <zs...@gmail.com>
Closes #8570 from zsxwing/SPARK-10411.
(cherry picked from commit 0349b5b4383cf813bea4e1053bcc4e0268603743)
Signed-off-by: Andrew Or <an...@databricks.com>
commit f01a96713a6ebb580c83e88652bc6d361aaec6f4
Author: Holden Karau <ho...@pigscanfly.ca>
Date: 2015-09-03T08:30:54Z
[SPARK-10332] [CORE] Fix yarn spark executor validation
From Jira:
Running spark-submit with yarn with number-executors equal to 0 when not using dynamic allocation should error out.
In spark 1.5.0 it continues and ends up hanging.
yarn.ClientArguments still has the check so something else must have changed.
spark-submit --master yarn --deploy-mode cluster --class org.apache.spark.examples.SparkPi --num-executors 0 ....
spark 1.4.1 errors with:
java.lang.IllegalArgumentException:
Number of executors was 0, but must be at least 1
(or 0 if dynamic executor allocation is enabled).
Author: Holden Karau <ho...@pigscanfly.ca>
Closes #8580 from holdenk/SPARK-10332-spark-submit-to-yarn-executors-0-message.
(cherry picked from commit 67580f1f574d272af3712fd91458f3c87368c2e4)
Signed-off-by: Sean Owen <so...@cloudera.com>
commit f945b641c70790a82c864ec752b673b89bb4310f
Author: robbins <ro...@uk.ibm.com>
Date: 2015-09-03T20:48:35Z
[SPARK-9869] [STREAMING] Wait for all event notifications before asserting results
Author: robbins <ro...@uk.ibm.com>
Closes #8589 from robbinspg/InputStreamSuite-fix.
(cherry picked from commit 754f853b02e9fd221f138c2446445fd56e3f3fb3)
Signed-off-by: Andrew Or <an...@databricks.com>
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[GitHub] spark pull request: Branch 1.5
Posted by lin0Xu <gi...@git.apache.org>.
Github user lin0Xu commented on the pull request:
https://github.com/apache/spark/pull/10098#issuecomment-161233964
yeah.
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[GitHub] spark pull request: Branch 1.5
Posted by asfgit <gi...@git.apache.org>.
Github user asfgit closed the pull request at:
https://github.com/apache/spark/pull/10098
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[GitHub] spark pull request: Branch 1.5
Posted by lin0Xu <gi...@git.apache.org>.
Github user lin0Xu commented on the pull request:
https://github.com/apache/spark/pull/10098#issuecomment-161234158
no.
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[GitHub] spark pull request: Branch 1.5
Posted by vanzin <gi...@git.apache.org>.
Github user vanzin commented on the pull request:
https://github.com/apache/spark/pull/10098#issuecomment-161751095
@lin0Xu can you please close this pr?
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[GitHub] spark pull request: Branch 1.5
Posted by vanzin <gi...@git.apache.org>.
Github user vanzin commented on the pull request:
https://github.com/apache/spark/pull/10098#issuecomment-162621515
@lin0Xu another ping to please close this PR.
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[GitHub] spark pull request: Branch 1.5
Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the pull request:
https://github.com/apache/spark/pull/10098#issuecomment-161233214
Can one of the admins verify this patch?
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[GitHub] spark pull request: Branch 1.5
Posted by srowen <gi...@git.apache.org>.
Github user srowen commented on the pull request:
https://github.com/apache/spark/pull/10098#issuecomment-161234235
@lin0Xu please close this PR.
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