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Posted to commits@ctakes.apache.org by al...@apache.org on 2017/11/30 02:03:41 UTC
svn commit: r1816672 - in /ctakes/trunk: ./ ctakes-assertion-zoner/
ctakes-assertion/ ctakes-constituency-parser/ ctakes-coreference/
ctakes-dictionary-lookup-fast-res/ ctakes-dictionary-lookup-fast/
ctakes-dictionary-lookup-res/ ctakes-dictionary-look...
Author: alexz
Date: Thu Nov 30 02:03:40 2017
New Revision: 1816672
URL: http://svn.apache.org/viewvc?rev=1816672&view=rev
Log:
CTAKES-457: consistently usage of properties to manage dependency versions
Modified:
ctakes/trunk/ctakes-assertion-zoner/pom.xml
ctakes/trunk/ctakes-assertion/pom.xml
ctakes/trunk/ctakes-constituency-parser/pom.xml
ctakes/trunk/ctakes-coreference/pom.xml
ctakes/trunk/ctakes-dictionary-lookup-fast-res/pom.xml
ctakes/trunk/ctakes-dictionary-lookup-fast/pom.xml
ctakes/trunk/ctakes-dictionary-lookup-res/pom.xml
ctakes/trunk/ctakes-dictionary-lookup/pom.xml
ctakes/trunk/ctakes-distribution/pom.xml
ctakes/trunk/ctakes-drug-ner/pom.xml
ctakes/trunk/ctakes-gui/pom.xml
ctakes/trunk/ctakes-lvg-res/pom.xml
ctakes/trunk/ctakes-regression-test/pom.xml
ctakes/trunk/ctakes-relation-extractor/pom.xml
ctakes/trunk/ctakes-side-effect/pom.xml
ctakes/trunk/ctakes-smoking-status/pom.xml
ctakes/trunk/ctakes-temporal/pom.xml
ctakes/trunk/ctakes-type-system/pom.xml
ctakes/trunk/ctakes-utils/pom.xml
ctakes/trunk/ctakes-ytex-uima/pom.xml
ctakes/trunk/ctakes-ytex-web/pom.xml
ctakes/trunk/ctakes-ytex/pom.xml
ctakes/trunk/pom.xml
Modified: ctakes/trunk/ctakes-assertion-zoner/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion-zoner/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-assertion-zoner/pom.xml (original)
+++ ctakes/trunk/ctakes-assertion-zoner/pom.xml Thu Nov 30 02:03:40 2017
@@ -36,7 +36,6 @@
<dependency>
<groupId>net.sf.mastif</groupId>
<artifactId>mastif-zoner</artifactId>
- <version>1.4</version>
</dependency>
<!-- uimaj core is added by core (via utils). -->
<!--<dependency>-->
@@ -50,9 +49,9 @@
<!--<artifactId>spring-context</artifactId>-->
<!--</dependency>-->
<dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>ctakes-core</artifactId>
- </dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes-core</artifactId>
+ </dependency>
<!-- uimafit core is added by core (via type system). -->
<!--<dependency>-->
<!--<groupId>org.apache.uima</groupId>-->
@@ -64,7 +63,6 @@
<plugin>
<groupId>org.apache.uima</groupId>
<artifactId>jcasgen-maven-plugin</artifactId>
- <version>2.9.0</version>
<executions>
<execution>
<goals><goal>generate</goal></goals>
Modified: ctakes/trunk/ctakes-assertion/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-assertion/pom.xml (original)
+++ ctakes/trunk/ctakes-assertion/pom.xml Thu Nov 30 02:03:40 2017
@@ -113,18 +113,15 @@
<dependency>
<groupId>org.codehaus.jackson</groupId>
<artifactId>jackson-core-asl</artifactId>
- <version>1.5.0</version>
</dependency>
<dependency>
<groupId>org.codehaus.jackson</groupId>
<artifactId>jackson-mapper-asl</artifactId>
- <version>1.5.0</version>
</dependency>
<dependency>
<groupId>org.scala-tools.sbinary</groupId>
<artifactId>sbinary_2.9.0</artifactId>
- <version>0.4.0</version>
</dependency>
<!-- LVG added by dependency parser. -->
<!--<dependency>-->
@@ -155,7 +152,6 @@
<plugin>
<groupId>org.apache.uima</groupId>
<artifactId>jcasgen-maven-plugin</artifactId>
- <version>2.9.0</version>
<executions>
<execution>
<goals><goal>generate</goal></goals>
Modified: ctakes/trunk/ctakes-constituency-parser/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-constituency-parser/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-constituency-parser/pom.xml (original)
+++ ctakes/trunk/ctakes-constituency-parser/pom.xml Thu Nov 30 02:03:40 2017
@@ -47,7 +47,6 @@
<plugin>
<groupId>org.apache.uima</groupId>
<artifactId>jcasgen-maven-plugin</artifactId>
- <version>2.9.0</version>
<executions>
<execution>
<goals><goal>generate</goal></goals>
Modified: ctakes/trunk/ctakes-coreference/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-coreference/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-coreference/pom.xml (original)
+++ ctakes/trunk/ctakes-coreference/pom.xml Thu Nov 30 02:03:40 2017
@@ -54,7 +54,6 @@
<dependency>
<groupId>org.cleartk</groupId>
<artifactId>cleartk-ml-liblinear</artifactId>
- <version>2.0.0</version>
</dependency>
</dependencies>
<build>
@@ -62,7 +61,6 @@
<plugin>
<groupId>org.apache.uima</groupId>
<artifactId>jcasgen-maven-plugin</artifactId>
- <version>2.9.0</version>
<executions>
<execution>
<goals>
Modified: ctakes/trunk/ctakes-dictionary-lookup-fast-res/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dictionary-lookup-fast-res/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-dictionary-lookup-fast-res/pom.xml (original)
+++ ctakes/trunk/ctakes-dictionary-lookup-fast-res/pom.xml Thu Nov 30 02:03:40 2017
@@ -34,7 +34,6 @@
<!-- TODO : update per release -->
<groupId>net.sourceforge.ctakesresources</groupId>
<artifactId>ctakes-resources-sno_rx</artifactId>
- <version>4.0.0</version>
</dependency>
</dependencies>
<build>
Modified: ctakes/trunk/ctakes-dictionary-lookup-fast/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dictionary-lookup-fast/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-dictionary-lookup-fast/pom.xml (original)
+++ ctakes/trunk/ctakes-dictionary-lookup-fast/pom.xml Thu Nov 30 02:03:40 2017
@@ -36,7 +36,6 @@
<dependency>
<groupId>org.hsqldb</groupId>
<artifactId>hsqldb</artifactId>
- <version>2.3.4</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
Modified: ctakes/trunk/ctakes-dictionary-lookup-res/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dictionary-lookup-res/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-dictionary-lookup-res/pom.xml (original)
+++ ctakes/trunk/ctakes-dictionary-lookup-res/pom.xml Thu Nov 30 02:03:40 2017
@@ -35,17 +35,14 @@
<dependency>
<groupId>net.sourceforge.ctakesresources</groupId>
<artifactId>ctakes-resources-umls2011ab</artifactId>
- <version>4.0.0</version>
</dependency>
<dependency>
<groupId>net.sourceforge.ctakesresources</groupId>
<artifactId>ctakes-resources-rxnorm-hsqldb-2011ab</artifactId>
- <version>4.0.0</version>
</dependency>
<dependency>
<groupId>net.sourceforge.ctakesresources</groupId>
<artifactId>ctakes-resources-orangebook-hsqldb</artifactId>
- <version>4.0.0</version>
</dependency>
</dependencies>
Modified: ctakes/trunk/ctakes-dictionary-lookup/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dictionary-lookup/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-dictionary-lookup/pom.xml (original)
+++ ctakes/trunk/ctakes-dictionary-lookup/pom.xml Thu Nov 30 02:03:40 2017
@@ -28,16 +28,16 @@
<artifactId>ctakes</artifactId>
<version>4.0.1-SNAPSHOT</version>
</parent>
- <dependencies>
- <dependency>
+
+ <dependencies>
+ <dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-dictionary-lookup-res</artifactId>
</dependency>
<dependency>
- <groupId>org.hsqldb</groupId>
+ <groupId>org.hsqldb</groupId>
<artifactId>hsqldb</artifactId>
- <version>2.3.4</version>
- </dependency>
+ </dependency>
<!-- type system is added by utils via core. -->
<!--<dependency>-->
<!--<groupId>org.apache.ctakes</groupId>-->
Modified: ctakes/trunk/ctakes-distribution/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-distribution/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-distribution/pom.xml (original)
+++ ctakes/trunk/ctakes-distribution/pom.xml Thu Nov 30 02:03:40 2017
@@ -174,7 +174,6 @@
</plugin>
<plugin>
<artifactId>maven-antrun-plugin</artifactId>
- <version>1.6</version>
<executions>
<execution>
<id>generate checksums for binary artifacts</id>
Modified: ctakes/trunk/ctakes-drug-ner/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-drug-ner/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-drug-ner/pom.xml (original)
+++ ctakes/trunk/ctakes-drug-ner/pom.xml Thu Nov 30 02:03:40 2017
@@ -109,7 +109,6 @@
<plugin>
<groupId>org.apache.uima</groupId>
<artifactId>jcasgen-maven-plugin</artifactId>
- <version>2.9.0</version>
<executions>
<execution>
<goals><goal>generate</goal></goals>
Modified: ctakes/trunk/ctakes-gui/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-gui/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-gui/pom.xml (original)
+++ ctakes/trunk/ctakes-gui/pom.xml Thu Nov 30 02:03:40 2017
@@ -29,12 +29,11 @@
<dependency>
<groupId>org.hsqldb</groupId>
<artifactId>hsqldb</artifactId>
- <version>2.3.4</version>
</dependency>
<dependency>
<groupId>io.github.lukehutch</groupId>
<artifactId>fast-classpath-scanner</artifactId>
- <version>2.0.18</version>
+ <version>${fast-classpath-scanner.version}</version>
</dependency>
</dependencies>
Modified: ctakes/trunk/ctakes-lvg-res/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-lvg-res/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-lvg-res/pom.xml (original)
+++ ctakes/trunk/ctakes-lvg-res/pom.xml Thu Nov 30 02:03:40 2017
@@ -30,10 +30,10 @@
<name>Apache cTAKES Resources lvg</name>
<description>Resources Project for ctakes-lvg</description>
<dependencies>
+ <!-- TODO: remove dependency to net.sourceforge.ctakesresources -->
<dependency>
<groupId>net.sourceforge.ctakesresources</groupId>
<artifactId>ctakes-resources-lvg2008</artifactId>
- <version>4.0.0</version>
</dependency>
</dependencies>
<build>
@@ -72,4 +72,4 @@
</plugin>
</plugins>
</build>
-</project>
+</project>
Modified: ctakes/trunk/ctakes-regression-test/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-regression-test/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-regression-test/pom.xml (original)
+++ ctakes/trunk/ctakes-regression-test/pom.xml Thu Nov 30 02:03:40 2017
@@ -22,8 +22,6 @@
<dependency>
<groupId>xmlunit</groupId>
<artifactId>xmlunit</artifactId>
- <version>1.4</version>
- <scope>test</scope>
- </dependency>
+ </dependency>
</dependencies>
</project>
Modified: ctakes/trunk/ctakes-relation-extractor/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-relation-extractor/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-relation-extractor/pom.xml (original)
+++ ctakes/trunk/ctakes-relation-extractor/pom.xml Thu Nov 30 02:03:40 2017
@@ -94,7 +94,7 @@
<dependency>
<groupId>edu.mit</groupId>
<artifactId>jwi</artifactId>
- <version>2.2.3</version>
+ <version>${jwi.version}</version>
</dependency>
<!-- ctakes-core contains uimafit-core -->
<!-- cleartk-ml-liblinear is added by assertion -->
Modified: ctakes/trunk/ctakes-side-effect/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-side-effect/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-side-effect/pom.xml (original)
+++ ctakes/trunk/ctakes-side-effect/pom.xml Thu Nov 30 02:03:40 2017
@@ -88,7 +88,6 @@
<plugin>
<groupId>org.apache.uima</groupId>
<artifactId>jcasgen-maven-plugin</artifactId>
- <version>2.9.0</version>
<executions>
<execution>
<goals><goal>generate</goal></goals>
Modified: ctakes/trunk/ctakes-smoking-status/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-smoking-status/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-smoking-status/pom.xml (original)
+++ ctakes/trunk/ctakes-smoking-status/pom.xml Thu Nov 30 02:03:40 2017
@@ -88,7 +88,6 @@
<plugin>
<groupId>org.apache.uima</groupId>
<artifactId>jcasgen-maven-plugin</artifactId>
- <version>2.9.0</version>
<executions>
<execution>
<goals><goal>generate</goal></goals>
Modified: ctakes/trunk/ctakes-temporal/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-temporal/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-temporal/pom.xml (original)
+++ ctakes/trunk/ctakes-temporal/pom.xml Thu Nov 30 02:03:40 2017
@@ -63,28 +63,21 @@
<dependency>
<groupId>info.bethard</groupId>
<artifactId>timenorm</artifactId>
- <version>0.9.5</version>
+ <version>${timenorm.version}</version>
</dependency>
<dependency>
<groupId>com.googlecode.java-diff-utils</groupId>
<artifactId>diffutils</artifactId>
- <version>1.3.0</version>
+ <version>${diffutils.version}</version>
</dependency>
<dependency>
<groupId>org.cleartk</groupId>
<artifactId>cleartk-ml-mallet</artifactId>
- <!-->version>2.0.1-SNAPSHOT</version-->
</dependency>
<dependency>
<groupId>org.scala-lang</groupId>
<artifactId>scala-library</artifactId>
- <version>2.11.7</version>
- </dependency>
- <!--dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>ctakes-sentdetect-cleartk</artifactId>
- <version>4.0.1-SNAPSHOT</version>
- </dependency-->
+ </dependency>
</dependencies>
<!-- The below is all necessary to unpack the UMLS resources since they
can't be used from the classpath -->
@@ -96,7 +89,6 @@
<plugin>
<groupId>org.eclipse.m2e</groupId>
<artifactId>lifecycle-mapping</artifactId>
- <version>1.0.0</version>
<configuration>
<lifecycleMappingMetadata>
<pluginExecutions>
Modified: ctakes/trunk/ctakes-type-system/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-type-system/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-type-system/pom.xml (original)
+++ ctakes/trunk/ctakes-type-system/pom.xml Thu Nov 30 02:03:40 2017
@@ -62,7 +62,6 @@
<plugin>
<groupId>org.apache.uima</groupId>
<artifactId>jcasgen-maven-plugin</artifactId>
- <version>2.9.0</version>
<executions>
<execution>
<goals><goal>generate</goal></goals>
Modified: ctakes/trunk/ctakes-utils/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-utils/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-utils/pom.xml (original)
+++ ctakes/trunk/ctakes-utils/pom.xml Thu Nov 30 02:03:40 2017
@@ -40,6 +40,7 @@
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
+ <!-- TODO: refactor TestUtil.java and remove dependency over scope:compile -->
<scope>compile</scope>
</dependency>
<dependency>
Modified: ctakes/trunk/ctakes-ytex-uima/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-ytex-uima/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-ytex-uima/pom.xml (original)
+++ ctakes/trunk/ctakes-ytex-uima/pom.xml Thu Nov 30 02:03:40 2017
@@ -85,13 +85,11 @@
<dependency>
<groupId>org.scala-lang</groupId>
<artifactId>scala-library</artifactId>
- <version>2.11.7</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.scala-tools.sbinary</groupId>
<artifactId>sbinary_2.9.0</artifactId>
- <version>0.4.0</version>
<scope>test</scope>
</dependency>
<!-- end dependencies added from ctakes-assertion -->
@@ -100,12 +98,12 @@
<dependency>
<groupId>commons-collections</groupId>
<artifactId>commons-collections</artifactId>
- <version>3.2.1</version>
+ <version>${commons-collections.version}</version>
</dependency>
<dependency>
<groupId>cglib</groupId>
<artifactId>cglib</artifactId>
- <version>2.2.2</version>
+ <version>${cglib.version}</version>
</dependency>
<dependency>
<groupId>org.apache.uima</groupId>
@@ -117,7 +115,6 @@
<plugin>
<groupId>org.apache.uima</groupId>
<artifactId>jcasgen-maven-plugin</artifactId>
- <version>2.9.0</version>
<executions>
<execution>
<goals><goal>generate</goal></goals>
@@ -155,7 +152,6 @@
<!-- run ant scripts to setup test properties and database -->
<plugin>
<artifactId>maven-antrun-plugin</artifactId>
- <version>1.6</version>
<executions>
<execution>
<id>generate-test-config</id>
Modified: ctakes/trunk/ctakes-ytex-web/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-ytex-web/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-ytex-web/pom.xml (original)
+++ ctakes/trunk/ctakes-ytex-web/pom.xml Thu Nov 30 02:03:40 2017
@@ -15,20 +15,16 @@
<url>http://ctakes.apache.org</url>
<inceptionYear>2012</inceptionYear>
<properties>
- <cxf.version>2.7.8</cxf.version>
<jetty.useTestScope>false</jetty.useTestScope>
- <provided.scope>compile</provided.scope>
</properties>
<dependencies>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-ytex</artifactId>
- <scope>${provided.scope}</scope>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-ytex-res</artifactId>
- <scope>${provided.scope}</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
@@ -37,44 +33,42 @@
<dependency>
<groupId>com.sun.faces</groupId>
<artifactId>jsf-api</artifactId>
- <version>2.1.3</version>
- <scope>compile</scope>
+ <version>${jsf-api.version}</version>
</dependency>
<dependency>
<groupId>com.sun.faces</groupId>
<artifactId>jsf-impl</artifactId>
- <version>2.1.3</version>
- <scope>compile</scope>
+ <version>${jsf-impl.version}</version>
</dependency>
<!-- <dependency> <groupId>org.icepush</groupId> <artifactId>icepush</artifactId>
<version>2.0.2</version> </dependency> -->
<dependency>
<groupId>org.icefaces</groupId>
<artifactId>icefaces</artifactId>
- <version>2.0.2</version>
+ <version>${icefaces.version}</version>
</dependency>
<dependency>
<groupId>org.icefaces</groupId>
<artifactId>icefaces-ace</artifactId>
- <version>2.0.2</version>
+ <version>${icefaces.version}</version>
</dependency>
<dependency>
<groupId>org.icefaces</groupId>
<artifactId>icefaces-compat</artifactId>
- <version>2.0.2</version>
+ <version>${icefaces.version}</version>
</dependency>
<dependency>
<groupId>backport-util-concurrent</groupId>
<artifactId>backport-util-concurrent</artifactId>
- <version>3.1</version>
+ <version>${backport-util.version}</version>
</dependency>
<dependency>
<groupId>net.sf.jsr107cache</groupId>
<artifactId>jsr107cache</artifactId>
- <version>1.0</version>
+ <version>${jsr107cache.version}</version>
</dependency>
<dependency>
<groupId>org.apache.cxf</groupId>
@@ -102,40 +96,37 @@
<dependency>
<groupId>javax.servlet.jsp</groupId>
<artifactId>jsp-api</artifactId>
- <version>2.2</version>
+ <version>${servlet-jsp-api.version}</version>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>jstl</artifactId>
- <version>1.2</version>
+ <version>${servlet-jstl.version}</version>
</dependency>
<dependency>
<groupId>commons-el</groupId>
<artifactId>commons-el</artifactId>
- <version>1.0</version>
+ <version>${commons-el.version}</version>
</dependency>
<dependency>
<groupId>org.glassfish.web</groupId>
<artifactId>el-impl</artifactId>
- <version>2.2</version>
+ <version>${glassfish-web.version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-server</artifactId>
- <version>9.1.0.M0</version>
- <scope>${provided.scope}</scope>
+ <version>${jetty.version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-runner</artifactId>
- <version>9.1.0.M0</version>
- <scope>${provided.scope}</scope>
+ <version>${jetty.version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-jsp</artifactId>
- <version>9.1.0.M0</version>
- <scope>${provided.scope}</scope>
+ <version>${jetty.version}</version>
</dependency>
</dependencies>
<build>
@@ -170,7 +161,7 @@
<plugin>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-maven-plugin</artifactId>
- <version>9.1.0.M0</version>
+ <version>${jetty.version}</version>
<executions>
<execution>
<id>start-jetty</id>
@@ -204,22 +195,65 @@
</execution>
</executions>
</plugin>
- <!-- <plugin> <groupId>org.codehaus.mojo</groupId> <artifactId>selenium-maven-plugin</artifactId>
- <version>2.3</version> <executions> <execution> <id>start</id> <phase>pre-integration-test</phase>
- <goals> <goal>start-server</goal> </goals> <configuration> <background>true</background>
- <logOutput>true</logOutput> <multiWindow>true</multiWindow> </configuration>
- </execution> <execution> <id>stop</id> <phase>post-integration-test</phase>
- <goals> <goal>stop-server</goal> </goals> </execution> </executions> </plugin>
- <plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven-surefire-plugin</artifactId>
- <configuration> <excludes> <exclude>**/integration/*Test.java </exclude>
- </excludes> </configuration> <executions> <execution> <id>integration-tests</id>
- <phase>integration-test</phase> <goals> <goal>test</goal> </goals> <configuration>
- <skip>false</skip> <excludes> <exclude>none</exclude> </excludes> <includes>
- <include>**/integration/*Test.java </include> </includes> </configuration>
- </execution> </executions> </plugin> -->
+ <!--
+ <plugin>
+ <groupId>org.codehaus.mojo</groupId>
+ <artifactId>selenium-maven-plugin</artifactId>
+ <version>2.3</version>
+ <executions>
+ <execution>
+ <id>start</id>
+ <phase>pre-integration-test</phase>
+ <goals>
+ <goal>start-server</goal>
+ </goals>
+ <configuration>
+ <background>true</background>
+ <logOutput>true</logOutput>
+ <multiWindow>true</multiWindow>
+ </configuration>
+ </execution>
+ <execution>
+ <id>stop</id>
+ <phase>post-integration-test</phase>
+ <goals>
+ <goal>stop-server</goal>
+ </goals>
+ </execution>
+ </executions>
+ </plugin>
+
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-surefire-plugin</artifactId>
+ <configuration>
+ <excludes>
+ <exclude>**/integration/*Test.java</exclude>
+ </excludes>
+ </configuration>
+ <executions>
+ <execution>
+ <id>integration-tests</id>
+ <phase>integration-test</phase>
+ <goals>
+ <goal>test</goal>
+ </goals>
+ <configuration>
+ <skip>false</skip>
+ <excludes>
+ <exclude>none</exclude>
+ </excludes>
+ <includes>
+ <include>**/integration/*Test.java</include>
+ </includes>
+ </configuration>
+ </execution>
+ </executions>
+ </plugin>
+ -->
<plugin>
<artifactId>maven-war-plugin</artifactId>
- <version>2.4</version>
+ <version>${maven-war-plugin.version}</version>
<configuration>
<attachClasses>true</attachClasses>
</configuration>
Modified: ctakes/trunk/ctakes-ytex/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-ytex/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/ctakes-ytex/pom.xml (original)
+++ ctakes/trunk/ctakes-ytex/pom.xml Thu Nov 30 02:03:40 2017
@@ -21,15 +21,16 @@
</parent>
<dependencies>
<!-- begin non ASF compliant dependencies -->
+ <!-- HIBERNATE -->
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-core</artifactId>
- <version>4.2.6.Final</version>
+ <version>${hibernate.version}</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-ehcache</artifactId>
- <version>4.2.6.Final</version>
+ <version>${hibernate.version}</version>
<exclusions>
<exclusion>
<groupId>net.sf.ehcache</groupId>
@@ -40,27 +41,33 @@
<dependency>
<groupId>nz.ac.waikato.cms.weka</groupId>
<artifactId>weka-stable</artifactId>
- <version>3.6.10</version>
+ <version>${weka.version}</version>
</dependency>
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java</artifactId>
- <version>5.1.26</version>
+ <version>${mysql-connector.version}</version>
</dependency>
<!-- download from ms: http://www.microsoft.com/en-us/download/details.aspx?displaylang=en&id=11774,
install to local maven repo: mvn install:install-file -Dfile=sqljdbc4.jar
-DgroupId=com.microsoft.sqlserver -DartifactId=sqljdbc -Dversion=4.0 -Dpackaging=jar -->
<!-- Do *not* check this in with this depency uncommented - this will break
- builds in environments where the driver has not been added to the local repo
- <dependency> <groupId>com.microsoft.sqlserver</groupId> <artifactId>sqljdbc</artifactId>
- <version>4.0</version> </dependency> -->
+ builds in environments where the driver has not been added to the local repo -->
+ <!-- dependency>
+ <groupId>com.microsoft.sqlserver</groupId>
+ <artifactId>sqljdbc</artifactId>
+ <version>4.0</version>
+ </dependency -->
<!-- download from oracle http://www.oracle.com/technetwork/database/features/jdbc/jdbc-drivers-12c-download-1958347.html,
install to local maven repo: mvn install:install-file -Dfile=ojdbc7_g.jar
-DgroupId=oracle.jdbc -DartifactId=ojdbc7_g -Dversion=12.1.0.1.0 -Dpackaging=jar -->
<!-- Do *not* check this in with this depency uncommented - this will break
- builds in environments where the driver has not been added to the local repo
- <dependency> <groupId>oracle.jdbc</groupId> <artifactId>ojdbc7_g</artifactId>
- <version>12.1.0.1.0</version> </dependency> -->
+ builds in environments where the driver has not been added to the local repo -->
+ <!-- dependency>
+ <groupId>oracle.jdbc</groupId>
+ <artifactId>ojdbc7_g</artifactId>
+ <version>12.1.0.1.0</version>
+ </dependency> -->
<!-- end non ASF compliant dependencies -->
<!-- begin ASF compliant hibernate dependencies. we need to explicitly
@@ -69,25 +76,25 @@
<dependency>
<groupId>antlr</groupId>
<artifactId>antlr</artifactId>
- <version>2.7.7</version>
+ <version>${antlr.version}</version>
</dependency>
<!-- bsd -->
<dependency>
<groupId>dom4j</groupId>
<artifactId>dom4j</artifactId>
- <version>1.6.1</version>
+ <version>${dom4j.version}</version>
</dependency>
<!-- triple license including ASF -->
<dependency>
<groupId>org.javassist</groupId>
<artifactId>javassist</artifactId>
- <version>3.15.0-GA</version>
+ <version>${javassist.version}</version>
</dependency>
<!-- end ASF compliant hibernate dependencies -->
<dependency>
<groupId>ant-contrib</groupId>
<artifactId>ant-contrib</artifactId>
- <version>1.0b3</version>
+ <version>${ant-contrib.version}</version>
<exclusions>
<exclusion>
<artifactId>ant</artifactId>
@@ -98,7 +105,6 @@
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-ytex-res</artifactId>
- <version>${ctakes.version}</version>
</dependency>
<dependency>
<groupId>commons-lang</groupId>
@@ -111,27 +117,27 @@
<dependency>
<groupId>commons-jxpath</groupId>
<artifactId>commons-jxpath</artifactId>
- <version>1.3</version>
+ <version>${commons-jxpath.version}</version>
</dependency>
<dependency>
<groupId>commons-beanutils</groupId>
<artifactId>commons-beanutils</artifactId>
- <version>1.8.3</version>
+ <version>${commons-beanutils.version}</version>
</dependency>
<dependency>
<groupId>commons-dbcp</groupId>
<artifactId>commons-dbcp</artifactId>
- <version>1.4</version>
+ <version>${commons-dbcp.version}</version>
</dependency>
<dependency>
<groupId>org.apache.solr</groupId>
<artifactId>solr-commons-csv</artifactId>
- <version>3.5.0</version>
+ <version>${solr.version}</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId>
- <version>1.6.1</version>
+ <version>${slf4j.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
@@ -156,7 +162,7 @@
<dependency>
<groupId>org.aspectj</groupId>
<artifactId>aspectjweaver</artifactId>
- <version>1.7.3</version>
+ <version>${aspectj.version}</version>
</dependency>
<!-- ehcache > 2.5.0 breaks unit tests - get errors due to multiple cache
@@ -164,22 +170,22 @@
<dependency>
<groupId>net.sf.ehcache</groupId>
<artifactId>ehcache-core</artifactId>
- <version>2.4.6</version>
+ <version>${ehcache.version}</version>
</dependency>
<dependency>
<groupId>com.rubiconproject.oss</groupId>
<artifactId>jchronic</artifactId>
- <version>0.2.6</version>
+ <version>${jchronic.version}</version>
</dependency>
<dependency>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
- <version>2.2.5</version>
+ <version>${jaxb.version}</version>
</dependency>
<dependency>
<groupId>com.sun.xml.bind</groupId>
<artifactId>jaxb-impl</artifactId>
- <version>2.2.5</version>
+ <version>${jaxb.version}</version>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
@@ -188,12 +194,12 @@
<dependency>
<groupId>org.apache.ant</groupId>
<artifactId>ant-launcher</artifactId>
- <version>1.9.2</version>
+ <version>${ant.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ant</groupId>
<artifactId>ant</artifactId>
- <version>1.9.2</version>
+ <version>${ant.version}</version>
</dependency>
<!-- ytex should depend upon ctakes-clinical-pipeline , not the other way around. -->
<dependency>
@@ -218,7 +224,7 @@
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>jaxb2-maven-plugin</artifactId>
- <version>1.6</version>
+ <version>${jaxb2-maven-plugin.version}</version>
<executions>
<execution>
<goals>
@@ -255,7 +261,6 @@
</plugin>
<plugin>
<artifactId>maven-antrun-plugin</artifactId>
- <version>1.6</version>
<executions>
<execution>
<id>generate-config</id>
Modified: ctakes/trunk/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/pom.xml?rev=1816672&r1=1816671&r2=1816672&view=diff
==============================================================================
--- ctakes/trunk/pom.xml (original)
+++ ctakes/trunk/pom.xml Thu Nov 30 02:03:40 2017
@@ -78,14 +78,68 @@
</mailingLists>
<properties>
- <ctakes.version>4.0.1-SNAPSHOT</ctakes.version>
- <maven.compiler.source>1.8</maven.compiler.source>
- <maven.compiler.target>1.8</maven.compiler.target>
- <maven-surefire-plugin.version>2.12.1</maven-surefire-plugin.version>
+ <!-- dependencies -->
+ <ant.version>1.9.2</ant.version>
+ <antlr.version>2.7.7</antlr.version>
+ <ant-contrib.version>1.0b3</ant-contrib.version>
+ <aspectj.version>1.7.3</aspectj.version>
+ <backport-util.version>3.1</backport-util.version>
+ <cglib.version>2.2.2</cglib.version>
+ <cleartk.version>2.0.0</cleartk.version>
+ <commons-beanutils.version>1.8.3</commons-beanutils.version>
+ <commons-cli.version>1.2</commons-cli.version>
+ <commons-collections.version>3.2.1</commons-collections.version>
+ <commons-dbcp.version>1.4</commons-dbcp.version>
+ <commons-el.version>1.0</commons-el.version>
+ <commons-io.version>2.2</commons-io.version>
+ <commons-jxpath.version>1.3</commons-jxpath.version>
+ <commons-lang.version>2.6</commons-lang.version>
+ <commons-logging-api.version>1.1</commons-logging-api.version>
+ <commons-logging.version>1.1.1</commons-logging.version>
+ <commons-pool.version>1.5.4</commons-pool.version>
+ <ctakesresources.version>4.0.0</ctakesresources.version>
+ <cxf.version>2.7.8</cxf.version>
+ <diffutils.version>1.3.0</diffutils.version>
+ <dom4j.version>1.6.1</dom4j.version>
+ <ehcache.version>2.4.6</ehcache.version>
<exec-maven-plugin.version>1.2.1</exec-maven-plugin.version>
- <uimaj.version>2.9.0</uimaj.version>
- <uimafit.version>2.3.0</uimafit.version>
+ <fast-classpath-scanner.version>2.0.18</fast-classpath-scanner.version>
+ <glassfish-web.version>2.2</glassfish-web.version>
+ <hibernate.version>4.2.6.Final</hibernate.version>
+ <hsqldb.version>2.3.4</hsqldb.version>
+ <icefaces.version>2.0.2</icefaces.version>
+ <jackson.version>1.5.0</jackson.version>
+ <javassist.version>3.15.0-GA</javassist.version>
+ <jaxb.version>2.2.5</jaxb.version>
+ <jaxb2-maven-plugin.version>1.6</jaxb2-maven-plugin.version>
+ <jchronic.version>0.2.6</jchronic.version>
+ <jetty.version>9.1.0.M0</jetty.version>
+ <jsf-api.version>2.1.3</jsf-api.version>
+ <jsf-impl.version>2.1.3</jsf-impl.version>
+ <jsr107cache.version>1.0</jsr107cache.version>
+ <junit.version>4.11</junit.version>
+ <jwi.version>2.2.3</jwi.version>
+ <mastif.version>1.4</mastif.version>
+ <maven-antrun-plugin.version>1.6</maven-antrun-plugin.version>
+ <maven-assembly-plugin.version>2.4</maven-assembly-plugin.version>
+ <maven-surefire-plugin.version>2.12.1</maven-surefire-plugin.version>
+ <maven-war-plugin.version>2.4</maven-war-plugin.version>
+ <mysql-connector.version>5.1.26</mysql-connector.version>
+ <scala-library.version>2.11.7</scala-library.version>
+ <scala-tools.version>0.4.0</scala-tools.version>
+ <servlet-jsp-api.version>2.2</servlet-jsp-api.version>
+ <servlet-jstl.version>1.2</servlet-jstl.version>
+ <slf4j.version>1.6.1</slf4j.version>
+ <solr.version>3.5.0</solr.version>
<spring.version>4.3.12.RELEASE</spring.version>
+ <uimafit.version>2.3.0</uimafit.version>
+ <uimaj.version>2.9.0</uimaj.version>
+ <timenorm.version>0.9.5</timenorm.version>
+ <weka.version>3.6.10</weka.version>
+ <xmlunit.version>1.4</xmlunit.version>
+ <!-- project specific conventions -->
+ <maven.compiler.source>1.8</maven.compiler.source>
+ <maven.compiler.target>1.8</maven.compiler.target>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>
@@ -156,7 +210,7 @@
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
- <version>4.11</version>
+ <version>${junit.version}</version>
<scope>test</scope>
</dependency>
<dependency>
@@ -187,11 +241,6 @@
<version>2.0.6</version>
</dependency>
<dependency>
- <groupId>antlr</groupId>
- <artifactId>antlr</artifactId>
- <version>2.7.7</version>
- </dependency>
- <dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-core</artifactId>
<version>4.0.0</version>
@@ -221,17 +270,47 @@
<artifactId>lucene-analyzers-common</artifactId>
<version>4.0.0</version>
</dependency>
- <dependency>
+ <!-- TODO: remove unused dependency -->
+ <!-- dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-solr-grandparent</artifactId>
<version>4.0.0</version>
- </dependency>
+ </dependency -->
<!-- TODO : update snowball -->
<!--<dependency>-->
<!--<groupId>org.apache.lucene</groupId>-->
<!--<artifactId>lucene-snowball</artifactId>-->
<!--<version>4.0.0</version>-->
<!--</dependency>-->
+ <!-- Jackson -->
+ <dependency>
+ <groupId>org.codehaus.jackson</groupId>
+ <artifactId>jackson-core-asl</artifactId>
+ <version>${jackson.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.codehaus.jackson</groupId>
+ <artifactId>jackson-mapper-asl</artifactId>
+ <version>${jackson.version}</version>
+ </dependency>
+ <!-- Mastif: Assertion Classificaiton System -->
+ <dependency>
+ <groupId>net.sf.mastif</groupId>
+ <artifactId>mastif-zoner</artifactId>
+ <version>${mastif.version}</version>
+ </dependency>
+ <!-- Scala -->
+ <dependency>
+ <groupId>org.scala-lang</groupId>
+ <artifactId>scala-library</artifactId>
+ <version>${scala-library.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.scala-tools.sbinary</groupId>
+ <artifactId>sbinary_2.9.0</artifactId>
+ <version>${scala-tools.version}</version>
+ </dependency>
+ <!-- Apache UIMA -->
<dependency>
<groupId>org.apache.uima</groupId>
<artifactId>uimaj-core</artifactId>
@@ -292,11 +371,22 @@
<dependency>
<groupId>org.cleartk</groupId>
<artifactId>cleartk</artifactId>
- <version>2.0.0</version>
+ <version>${cleartk.version}</version>
<type>pom</type>
<scope>import</scope>
</dependency>
<dependency>
+ <groupId>org.cleartk</groupId>
+ <artifactId>cleartk-ml-liblinear</artifactId>
+ <version>${cleartk.version}</version>
+ </dependency>
+ <!-- HSQL DB -->
+ <dependency>
+ <groupId>org.hsqldb</groupId>
+ <artifactId>hsqldb</artifactId>
+ <version>${hsqldb.version}</version>
+ </dependency>
+ <dependency>
<groupId>args4j</groupId>
<artifactId>args4j</artifactId>
<version>2.0.16</version>
@@ -314,12 +404,12 @@
<dependency>
<groupId>commons-lang</groupId>
<artifactId>commons-lang</artifactId>
- <version>2.6</version>
+ <version>${commons-lang.version}</version>
</dependency>
<dependency>
<groupId>commons-cli</groupId>
<artifactId>commons-cli</artifactId>
- <version>1.2</version>
+ <version>${commons-cli.version}</version>
</dependency>
<dependency>
<groupId>commons-logging</groupId>
@@ -416,310 +506,344 @@
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-gui</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-gui-res</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-examples</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-examples-res</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-type-system</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-utils</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-core</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-core-res</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-dictionary-lookup</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-dictionary-lookup-res</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-dictionary-lookup-fast</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-dictionary-lookup-fast-res</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-preprocessor</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-pos-tagger</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-pos-tagger-res</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-chunker</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-chunker-res</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-lvg</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-lvg-res</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-context-tokenizer
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-clinical-pipeline
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-clinical-pipeline-res
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-ne-contexts
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-ne-contexts-res
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-assertion
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-assertion-res
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-assertion-zoner</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-assertion-zoner-res</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-constituency-parser
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-constituency-parser-res
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-coreference
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-coreference-res
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-drug-ner
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-drug-ner-res
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-side-effect
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-side-effect-res
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-smoking-status
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-smoking-status-res
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-dependency-parser
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-dependency-parser-res
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-relation-extractor
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-relation-extractor-res
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-temporal
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-temporal-res
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-ytex-res
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-ytex
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-ytex-uima
- </artifactId>
- <version>${ctakes.version}</version>
+ <artifactId>ctakes-ytex-uima</artifactId>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-ytex-web
- </artifactId>
- <version>${ctakes.version}</version>
+ <artifactId>ctakes-ytex-web</artifactId>
+ <version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>
ctakes-distribution
</artifactId>
- <version>${ctakes.version}</version>
+ <version>${project.version}</version>
</dependency>
+ <!-- cTAKES Resources -->
+ <dependency>
+ <groupId>net.sourceforge.ctakesresources</groupId>
+ <artifactId>ctakes-resources-lvg2008</artifactId>
+ <version>${ctakesresources.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>net.sourceforge.ctakesresources</groupId>
+ <artifactId>ctakes-resources-orangebook-hsqldb</artifactId>
+ <version>${ctakesresources.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>net.sourceforge.ctakesresources</groupId>
+ <artifactId>ctakes-resources-rxnorm-hsqldb-2011ab</artifactId>
+ <version>${ctakesresources.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>net.sourceforge.ctakesresources</groupId>
+ <artifactId>ctakes-resources-sno_rx</artifactId>
+ <version>${ctakesresources.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>net.sourceforge.ctakesresources</groupId>
+ <artifactId>ctakes-resources-umls2011ab</artifactId>
+ <version>${ctakesresources.version}</version>
+ </dependency>
+ <!-- XML Unit -->
+ <dependency>
+ <groupId>xmlunit</groupId>
+ <artifactId>xmlunit</artifactId>
+ <version>${xmlunit.version}</version>
+ <scope>test</scope>
+ </dependency>
</dependencies>
</dependencyManagement>
<build>
<!-- It's good practice to explicitly declare versions for all plugins -->
<pluginManagement>
<plugins>
+ <!-- TODO: remove dependency upon Apache Ant -->
+ <plugin>
+ <artifactId>maven-antrun-plugin</artifactId>
+ <version>${maven-antrun-plugin.version}</version>
+ </plugin>
<plugin>
<groupId>com.mycila.maven-license-plugin</groupId>
<artifactId>maven-license-plugin</artifactId>
@@ -770,7 +894,7 @@
</plugin>
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
- <version>2.4</version>
+ <version>${maven-assembly-plugin.version}</version>
</plugin>
<plugin>
<artifactId>maven-clean-plugin</artifactId>
@@ -914,7 +1038,7 @@
<plugin>
<groupId>org.eclipse.m2e</groupId>
<artifactId>lifecycle-mapping</artifactId>
- <version>1.0</version>
+ <version>1.0.0</version>
<configuration>
<lifecycleMappingMetadata>
<pluginExecutions>
@@ -977,6 +1101,11 @@
<includePluginDependencies>true</includePluginDependencies>
</configuration>
</plugin>
+ <plugin>
+ <groupId>org.apache.uima</groupId>
+ <artifactId>jcasgen-maven-plugin</artifactId>
+ <version>${uimaj.version}</version>
+ </plugin>
</plugins>
</pluginManagement>
</build>