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Posted to commits@taverna.apache.org by st...@apache.org on 2019/01/18 14:40:48 UTC
[incubator-taverna-workbench-common-activities] branch master
updated (0f3fcc7 -> b48657f)
This is an automated email from the ASF dual-hosted git repository.
stain pushed a change to branch master
in repository https://gitbox.apache.org/repos/asf/incubator-taverna-workbench-common-activities.git.
from 0f3fcc7 https snapshot repository
new 8d32cf9 consistent pom versions
new 0b09b64 ASF file header in pom.xml
new 58d26bc ASF license headers
new 0e8275d Remove t2flow workers (now in .json)
new 68858e8 Remove *.bak example service description
new efaacde Apache Taverna as name in pom
new 0de57bc reformat: unix file ending
new b48657f reformat: tab->space
The 492 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
pom.xml | 26 +-
taverna-beanshell-activity-ui/pom.xml | 49 ++--
taverna-external-tool-activity-ui/pom.xml | 39 ++-
taverna-localworker-activity-ui/pom.xml | 43 ++-
.../LocalworkerServiceProvider.java | 4 +-
.../src/main/resources/localworker_names | 15 +
...averna.scuflworkers.biojava.GenBankParserWorker | 74 -----
...a.scuflworkers.biojava.GenBankParserWorker.json | 3 +
....taverna.scuflworkers.biojava.ReverseCompWorker | 43 ---
...rna.scuflworkers.biojava.ReverseCompWorker.json | 3 +
...erna.scuflworkers.biojava.SwissProtParserWorker | 72 -----
...scuflworkers.biojava.SwissProtParserWorker.json | 3 +
...e.taverna.scuflworkers.biojava.TranscribeWorker | 48 ----
...erna.scuflworkers.biojava.TranscribeWorker.json | 3 +
...verna.scuflworkers.io.ConcatenateFileListWorker | 101 -------
....scuflworkers.io.ConcatenateFileListWorker.json | 3 +
...forge.taverna.scuflworkers.io.EnvVariableWorker | 33 ---
....taverna.scuflworkers.io.EnvVariableWorker.json | 3 +
...forge.taverna.scuflworkers.io.FileListByExtTask | 73 -----
....taverna.scuflworkers.io.FileListByExtTask.json | 3 +
...rge.taverna.scuflworkers.io.FileListByRegexTask | 71 -----
...averna.scuflworkers.io.FileListByRegexTask.json | 3 +
...ourceforge.taverna.scuflworkers.io.LocalCommand | 80 ------
...forge.taverna.scuflworkers.io.LocalCommand.json | 3 +
...rceforge.taverna.scuflworkers.io.TextFileReader | 76 -----
...rge.taverna.scuflworkers.io.TextFileReader.json | 3 +
...rceforge.taverna.scuflworkers.io.TextFileWriter | 57 ----
...rge.taverna.scuflworkers.io.TextFileWriter.json | 3 +
...eforge.taverna.scuflworkers.jdbc.SQLQueryWorker | 309 ---------------------
...e.taverna.scuflworkers.jdbc.SQLQueryWorker.json | 3 +
...forge.taverna.scuflworkers.jdbc.SQLUpdateWorker | 229 ---------------
....taverna.scuflworkers.jdbc.SQLUpdateWorker.json | 3 +
...taverna.scuflworkers.ncbi.NucleotideFastaWorker | 45 ---
...na.scuflworkers.ncbi.NucleotideFastaWorker.json | 3 +
...taverna.scuflworkers.ncbi.NucleotideGBSeqWorker | 45 ---
...na.scuflworkers.ncbi.NucleotideGBSeqWorker.json | 3 +
...na.scuflworkers.ncbi.NucleotideINSDSeqXMLWorker | 45 ---
...uflworkers.ncbi.NucleotideINSDSeqXMLWorker.json | 3 +
...na.scuflworkers.ncbi.NucleotideTinySeqXMLWorker | 45 ---
...uflworkers.ncbi.NucleotideTinySeqXMLWorker.json | 3 +
...ge.taverna.scuflworkers.ncbi.ProteinFastaWorker | 45 ---
...verna.scuflworkers.ncbi.ProteinFastaWorker.json | 3 +
...ge.taverna.scuflworkers.ncbi.ProteinGBSeqWorker | 45 ---
...verna.scuflworkers.ncbi.ProteinGBSeqWorker.json | 3 +
...verna.scuflworkers.ncbi.ProteinINSDSeqXMLWorker | 45 ---
....scuflworkers.ncbi.ProteinINSDSeqXMLWorker.json | 3 +
...verna.scuflworkers.ncbi.ProteinTinySeqXMLWorker | 45 ---
....scuflworkers.ncbi.ProteinTinySeqXMLWorker.json | 3 +
...ge.taverna.scuflworkers.ncbi.PubMedEFetchWorker | 68 -----
...verna.scuflworkers.ncbi.PubMedEFetchWorker.json | 3 +
...e.taverna.scuflworkers.ncbi.PubMedESearchWorker | 124 ---------
...erna.scuflworkers.ncbi.PubMedESearchWorker.json | 3 +
....sourceforge.taverna.scuflworkers.net.BrowseUrl | 31 ---
...ceforge.taverna.scuflworkers.net.BrowseUrl.json | 3 +
...rceforge.taverna.scuflworkers.net.ExtractHeader | 55 ----
...rge.taverna.scuflworkers.net.ExtractHeader.json | 3 +
...t.sourceforge.taverna.scuflworkers.ui.AskWorker | 41 ---
...rceforge.taverna.scuflworkers.ui.AskWorker.json | 3 +
...ourceforge.taverna.scuflworkers.ui.ChooseWorker | 80 ------
...forge.taverna.scuflworkers.ui.ChooseWorker.json | 3 +
...eforge.taverna.scuflworkers.ui.SelectFileWorker | 116 --------
...e.taverna.scuflworkers.ui.SelectFileWorker.json | 3 +
...ourceforge.taverna.scuflworkers.ui.SelectWorker | 53 ----
...forge.taverna.scuflworkers.ui.SelectWorker.json | 3 +
....sourceforge.taverna.scuflworkers.ui.TellWorker | 42 ---
...ceforge.taverna.scuflworkers.ui.TellWorker.json | 3 +
....sourceforge.taverna.scuflworkers.ui.WarnWorker | 42 ---
...ceforge.taverna.scuflworkers.ui.WarnWorker.json | 3 +
...eforge.taverna.scuflworkers.xml.XPathTextWorker | 75 -----
...e.taverna.scuflworkers.xml.XPathTextWorker.json | 3 +
...sourceforge.taverna.scuflworkers.xml.XSLTWorker | 152 ----------
...eforge.taverna.scuflworkers.xml.XSLTWorker.json | 3 +
...verna.scuflworkers.xml.XSLTWorkerWithParameters | 100 -------
....scuflworkers.xml.XSLTWorkerWithParameters.json | 3 +
...bi.escience.scuflworkers.java.ByteArrayToString | 44 ---
...cience.scuflworkers.java.ByteArrayToString.json | 3 +
...mbl.ebi.escience.scuflworkers.java.DecodeBase64 | 31 ---
...bi.escience.scuflworkers.java.DecodeBase64.json | 3 +
...rg.embl.ebi.escience.scuflworkers.java.EchoList | 26 --
...bl.ebi.escience.scuflworkers.java.EchoList.json | 3 +
...bi.escience.scuflworkers.java.EmitLotsOfStrings | 19 --
...cience.scuflworkers.java.EmitLotsOfStrings.json | 3 +
...mbl.ebi.escience.scuflworkers.java.EncodeBase64 | 30 --
...bi.escience.scuflworkers.java.EncodeBase64.json | 3 +
...bi.escience.scuflworkers.java.ExtractImageLinks | 41 ---
...cience.scuflworkers.java.ExtractImageLinks.json | 3 +
...ebi.escience.scuflworkers.java.FilterStringList | 43 ---
...science.scuflworkers.java.FilterStringList.json | 3 +
...embl.ebi.escience.scuflworkers.java.FlattenList | 39 ---
...ebi.escience.scuflworkers.java.FlattenList.json | 3 +
...g.embl.ebi.escience.scuflworkers.java.PadNumber | 44 ---
...l.ebi.escience.scuflworkers.java.PadNumber.json | 3 +
...e.scuflworkers.java.RegularExpressionStringList | 60 ----
...flworkers.java.RegularExpressionStringList.json | 3 +
...g.embl.ebi.escience.scuflworkers.java.SendEmail | 85 ------
...l.ebi.escience.scuflworkers.java.SendEmail.json | 3 +
...mbl.ebi.escience.scuflworkers.java.SplitByRegex | 47 ----
...bi.escience.scuflworkers.java.SplitByRegex.json | 3 +
...mbl.ebi.escience.scuflworkers.java.StringConcat | 36 ---
...bi.escience.scuflworkers.java.StringConcat.json | 3 +
....ebi.escience.scuflworkers.java.StringListMerge | 49 ----
...escience.scuflworkers.java.StringListMerge.json | 3 +
....escience.scuflworkers.java.StringSetDifference | 49 ----
...ence.scuflworkers.java.StringSetDifference.json | 3 +
...science.scuflworkers.java.StringSetIntersection | 43 ---
...ce.scuflworkers.java.StringSetIntersection.json | 3 +
...l.ebi.escience.scuflworkers.java.StringSetUnion | 43 ---
....escience.scuflworkers.java.StringSetUnion.json | 3 +
...science.scuflworkers.java.StringStripDuplicates | 33 ---
...ce.scuflworkers.java.StringStripDuplicates.json | 3 +
...ce.scuflworkers.java.TestAlwaysFailingProcessor | 36 ---
...uflworkers.java.TestAlwaysFailingProcessor.json | 3 +
...i.escience.scuflworkers.java.TestSometimesFails | 34 ---
...ience.scuflworkers.java.TestSometimesFails.json | 3 +
....ebi.escience.scuflworkers.java.WebImageFetcher | 64 -----
...escience.scuflworkers.java.WebImageFetcher.json | 3 +
...l.ebi.escience.scuflworkers.java.WebPageFetcher | 68 -----
....escience.scuflworkers.java.WebPageFetcher.json | 3 +
taverna-rest-activity-ui/pom.xml | 45 ++-
.../ui/serviceprovider/ExampleServiceDesc.java.bak | 99 -------
.../ExampleServiceProvider.java.bak | 106 -------
.../ExampleServiceProviderConfig.java.bak | 31 ---
taverna-spreadsheet-import-activity-ui/pom.xml | 46 ++-
taverna-wsdl-activity-ui/pom.xml | 46 ++-
taverna-xpath-activity-ui/pom.xml | 149 +++++-----
125 files changed, 388 insertions(+), 4047 deletions(-)
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.biojava.GenBankParserWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.biojava.ReverseCompWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.biojava.SwissProtParserWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.biojava.TranscribeWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.ConcatenateFileListWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.EnvVariableWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.FileListByExtTask
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.FileListByRegexTask
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.LocalCommand
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.TextFileReader
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.TextFileWriter
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.jdbc.SQLQueryWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.jdbc.SQLUpdateWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideFastaWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideGBSeqWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideINSDSeqXMLWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideTinySeqXMLWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinFastaWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinGBSeqWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinINSDSeqXMLWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinTinySeqXMLWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.PubMedEFetchWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.PubMedESearchWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.net.BrowseUrl
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.net.ExtractHeader
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ui.AskWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ui.ChooseWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ui.SelectFileWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ui.SelectWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ui.TellWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ui.WarnWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.xml.XPathTextWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.xml.XSLTWorker
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.xml.XSLTWorkerWithParameters
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.ByteArrayToString
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.DecodeBase64
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.EchoList
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.EmitLotsOfStrings
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.EncodeBase64
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.ExtractImageLinks
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.FilterStringList
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.FlattenList
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.PadNumber
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.RegularExpressionStringList
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.SendEmail
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.SplitByRegex
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.StringConcat
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.StringListMerge
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.StringSetDifference
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.StringSetIntersection
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.StringSetUnion
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.TestAlwaysFailingProcessor
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.TestSometimesFails
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.WebImageFetcher
delete mode 100644 taverna-localworker-activity-ui/src/main/resources/org.embl.ebi.escience.scuflworkers.java.WebPageFetcher
delete mode 100644 taverna-rest-activity-ui/src/main/java/org/apache/taverna/activities/rest/ui/serviceprovider/ExampleServiceDesc.java.bak
delete mode 100644 taverna-rest-activity-ui/src/main/java/org/apache/taverna/activities/rest/ui/serviceprovider/ExampleServiceProvider.java.bak
delete mode 100644 taverna-rest-activity-ui/src/main/java/org/apache/taverna/activities/rest/ui/serviceprovider/ExampleServiceProviderConfig.java.bak