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Posted to reviews@spark.apache.org by felixcheung <gi...@git.apache.org> on 2016/07/13 08:16:28 UTC
[GitHub] spark pull request #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession in...
GitHub user felixcheung opened a pull request:
https://github.com/apache/spark/pull/14177
[SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
## What changes were proposed in this pull request?
Fix R SparkSession init/stop, and warnings of reusing existing Spark Context
## How was this patch tested?
unit tests
@shivaram
You can merge this pull request into a Git repository by running:
$ git pull https://github.com/felixcheung/spark rsessiontest
Alternatively you can review and apply these changes as the patch at:
https://github.com/apache/spark/pull/14177.patch
To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:
This closes #14177
----
commit 72fffbb593de289fb4434c730c592e04b50fb13f
Author: Felix Cheung <fe...@hotmail.com>
Date: 2016-07-13T05:42:01Z
fix session start/stop in tests
commit 614a63e091a8164696a4316564bdae53257953de
Author: Felix Cheung <fe...@hotmail.com>
Date: 2016-07-13T06:56:56Z
fix test
commit 1a86e857ab954620fb33dde8667f3a2a7d5138dc
Author: Felix Cheung <fe...@hotmail.com>
Date: 2016-07-13T07:56:09Z
fix style
----
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:
https://github.com/apache/spark/pull/14177
Merged build finished. Test PASSed.
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/14177
**[Test build #62419 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/62419/consoleFull)** for PR 14177 at commit [`bec4b33`](https://github.com/apache/spark/commit/bec4b3372d8e861d8b3f7c04cf4675a02918808f).
* This patch **fails SparkR unit tests**.
* This patch merges cleanly.
* This patch adds no public classes.
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by shivaram <gi...@git.apache.org>.
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14177
Hmm ok - The only difference in the patch I tried out locally is that I had the `sleep` in the loop test case. Did you remove that for some other reason ?
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:
https://github.com/apache/spark/pull/14177
Merged build finished. Test PASSed.
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by felixcheung <gi...@git.apache.org>.
Github user felixcheung commented on the issue:
https://github.com/apache/spark/pull/14177
I didn't think that should be needed since SparkSession was created with enableHiveSupport = F. Let me try that too.
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:
https://github.com/apache/spark/pull/14177
Merged build finished. Test FAILed.
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/14177
**[Test build #62417 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/62417/consoleFull)** for PR 14177 at commit [`03f163a`](https://github.com/apache/spark/commit/03f163a660f7a4abd9d99449524396ad91830e24).
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by felixcheung <gi...@git.apache.org>.
Github user felixcheung commented on the issue:
https://github.com/apache/spark/pull/14177
I'd hit these errors fairly randomly if hive = T, even when stop is called
```
java.sql.SQLException: Failed to start database 'metastore_db' with class loader org.apache.spark.sql.hive.client.IsolatedClientLoader$$anon$1@1522765a, see the next exception for details.
at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.seeNextException(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.getNewEmbedConnection(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:208)
at com.jolbox.bonecp.BoneCP.obtainRawInternalConnection(BoneCP.java:349)
at com.jolbox.bonecp.BoneCP.<init>(BoneCP.java:416)
at com.jolbox.bonecp.BoneCPDataSource.getConnection(BoneCPDataSource.java:120)
at org.datanucleus.store.rdbms.ConnectionFactoryImpl$ManagedConnectionImpl.getConnection(ConnectionFactoryImpl.java:501)
at org.datanucleus.store.rdbms.RDBMSStoreManager.<init>(RDBMSStoreManager.java:298)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
at org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:301)
at org.datanucleus.NucleusContext.createStoreManagerForProperties(NucleusContext.java:1187)
at org.datanucleus.NucleusContext.initialise(NucleusContext.java:356)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:775)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:333)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:202)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at javax.jdo.JDOHelper$16.run(JDOHelper.java:1965)
at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.invoke(JDOHelper.java:1960)
at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1166)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
at org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
at org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:620)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762)
at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199)
at org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at org.apache.hadoop.hive.ql.metadata.Hive.getAllDatabases(Hive.java:1234)
at org.apache.hadoop.hive.ql.metadata.Hive.reloadFunctions(Hive.java:174)
at org.apache.hadoop.hive.ql.metadata.Hive.<clinit>(Hive.java:166)
at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:503)
at org.apache.spark.sql.hive.client.HiveClientImpl.<init>(HiveClientImpl.scala:171)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.spark.sql.hive.client.IsolatedClientLoader.createClient(IsolatedClientLoader.scala:264)
at org.apache.spark.sql.hive.HiveUtils$.newClientForMetadata(HiveUtils.scala:358)
at org.apache.spark.sql.hive.HiveUtils$.newClientForMetadata(HiveUtils.scala:262)
at org.apache.spark.sql.hive.HiveSharedState.metadataHive$lzycompute(HiveSharedState.scala:39)
at org.apache.spark.sql.hive.HiveSharedState.metadataHive(HiveSharedState.scala:38)
at org.apache.spark.sql.hive.HiveSharedState.externalCatalog$lzycompute(HiveSharedState.scala:46)
at org.apache.spark.sql.hive.HiveSharedState.externalCatalog(HiveSharedState.scala:45)
at org.apache.spark.sql.hive.HiveSessionState.catalog$lzycompute(HiveSessionState.scala:50)
at org.apache.spark.sql.hive.HiveSessionState.catalog(HiveSessionState.scala:48)
at org.apache.spark.sql.hive.HiveSessionState$$anon$1.<init>(HiveSessionState.scala:63)
at org.apache.spark.sql.hive.HiveSessionState.analyzer$lzycompute(HiveSessionState.scala:63)
at org.apache.spark.sql.hive.HiveSessionState.analyzer(HiveSessionState.scala:62)
at org.apache.spark.sql.execution.QueryExecution.assertAnalyzed(QueryExecution.scala:49)
at org.apache.spark.sql.Dataset$.ofRows(Dataset.scala:64)
at org.apache.spark.sql.SparkSession.baseRelationToDataFrame(SparkSession.scala:371)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:143)
at org.apache.spark.sql.DataFrameReader.json(DataFrameReader.scala:287)
at org.apache.spark.sql.DataFrameReader.json(DataFrameReader.scala:287)
at sun.reflect.GeneratedMethodAccessor1348.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.api.r.RBackendHandler.handleMethodCall(RBackendHandler.scala:141)
at org.apache.spark.api.r.RBackendHandler.channelRead0(RBackendHandler.scala:86)
at org.apache.spark.api.r.RBackendHandler.channelRead0(RBackendHandler.scala:38)
at io.netty.channel.SimpleChannelInboundHandler.channelRead(SimpleChannelInboundHandler.java:105)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:308)
at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:294)
at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:103)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:308)
at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:294)
at io.netty.handler.codec.ByteToMessageDecoder.channelRead(ByteToMessageDecoder.java:244)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:308)
at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:294)
at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:846)
at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:131)
at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:511)
at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:468)
at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:382)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:354)
at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:111)
at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:137)
at java.lang.Thread.run(Thread.java:745)
Caused by: ERROR XJ040: Failed to start database 'metastore_db' with class loader org.apache.spark.sql.hive.client.IsolatedClientLoader$$anon$1@1522765a, see the next exception for details.
at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
at org.apache.derby.impl.jdbc.SQLExceptionFactory.wrapArgsForTransportAcrossDRDA(Unknown Source)
... 115 more
Caused by: ERROR XSDB6: Another instance of Derby may have already booted the database /opt/spark-2.0.0-bin-hadoop2.6/R/metastore_db.
at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.privGetJBMSLockOnDB(Unknown Source)
at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.getJBMSLockOnDB(Unknown Source)
at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
at org.apache.derby.impl.services.monitor.FileMonitor.startModule(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
at org.apache.derby.impl.store.raw.RawStore.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
at org.apache.derby.impl.services.monitor.FileMonitor.startModule(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
at org.apache.derby.impl.store.access.RAMAccessManager.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
at org.apache.derby.impl.services.monitor.FileMonitor.startModule(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
at org.apache.derby.impl.db.BasicDatabase.bootStore(Unknown Source)
at org.apache.derby.impl.db.BasicDatabase.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.bootService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startProviderService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.findProviderAndStartService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startPersistentService(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.startPersistentService(Unknown Source)
... 112 more
============= begin nested exception, level (1) ===========
java.sql.SQLException: Another instance of Derby may have already booted the database /opt/spark-2.0.0-bin-hadoop2.6/R/metastore_db.
at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.getNewEmbedConnection(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:208)
at com.jolbox.bonecp.BoneCP.obtainRawInternalConnection(BoneCP.java:349)
at com.jolbox.bonecp.BoneCP.<init>(BoneCP.java:416)
at com.jolbox.bonecp.BoneCPDataSource.getConnection(BoneCPDataSource.java:120)
at org.datanucleus.store.rdbms.ConnectionFactoryImpl$ManagedConnectionImpl.getConnection(ConnectionFactoryImpl.java:501)
at org.datanucleus.store.rdbms.RDBMSStoreManager.<init>(RDBMSStoreManager.java:298)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
at org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:301)
at org.datanucleus.NucleusContext.createStoreManagerForProperties(NucleusContext.java:1187)
at org.datanucleus.NucleusContext.initialise(NucleusContext.java:356)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:775)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:333)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:202)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at javax.jdo.JDOHelper$16.run(JDOHelper.java:1965)
at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.invoke(JDOHelper.java:1960)
at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1166)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
at org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
at org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:620)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762)
at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199)
at org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at org.apache.hadoop.hive.ql.metadata.Hive.getAllDatabases(Hive.java:1234)
at org.apache.hadoop.hive.ql.metadata.Hive.reloadFunctions(Hive.java:174)
at org.apache.hadoop.hive.ql.metadata.Hive.<clinit>(Hive.java:166)
at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:503)
at org.apache.spark.sql.hive.client.HiveClientImpl.<init>(HiveClientImpl.scala:171)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.spark.sql.hive.client.IsolatedClientLoader.createClient(IsolatedClientLoader.scala:264)
at org.apache.spark.sql.hive.HiveUtils$.newClientForMetadata(HiveUtils.scala:358)
at org.apache.spark.sql.hive.HiveUtils$.newClientForMetadata(HiveUtils.scala:262)
at org.apache.spark.sql.hive.HiveSharedState.metadataHive$lzycompute(HiveSharedState.scala:39)
at org.apache.spark.sql.hive.HiveSharedState.metadataHive(HiveSharedState.scala:38)
at org.apache.spark.sql.hive.HiveSharedState.externalCatalog$lzycompute(HiveSharedState.scala:46)
at org.apache.spark.sql.hive.HiveSharedState.externalCatalog(HiveSharedState.scala:45)
at org.apache.spark.sql.hive.HiveSessionState.catalog$lzycompute(HiveSessionState.scala:50)
at org.apache.spark.sql.hive.HiveSessionState.catalog(HiveSessionState.scala:48)
at org.apache.spark.sql.hive.HiveSessionState$$anon$1.<init>(HiveSessionState.scala:63)
at org.apache.spark.sql.hive.HiveSessionState.analyzer$lzycompute(HiveSessionState.scala:63)
at org.apache.spark.sql.hive.HiveSessionState.analyzer(HiveSessionState.scala:62)
at org.apache.spark.sql.execution.QueryExecution.assertAnalyzed(QueryExecution.scala:49)
at org.apache.spark.sql.Dataset$.ofRows(Dataset.scala:64)
at org.apache.spark.sql.SparkSession.baseRelationToDataFrame(SparkSession.scala:371)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:143)
at org.apache.spark.sql.DataFrameReader.json(DataFrameReader.scala:287)
at org.apache.spark.sql.DataFrameReader.json(DataFrameReader.scala:287)
at sun.reflect.GeneratedMethodAccessor1348.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.api.r.RBackendHandler.handleMethodCall(RBackendHandler.scala:141)
at org.apache.spark.api.r.RBackendHandler.channelRead0(RBackendHandler.scala:86)
at org.apache.spark.api.r.RBackendHandler.channelRead0(RBackendHandler.scala:38)
at io.netty.channel.SimpleChannelInboundHandler.channelRead(SimpleChannelInboundHandler.java:105)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:308)
at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:294)
at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:103)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:308)
at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:294)
at io.netty.handler.codec.ByteToMessageDecoder.channelRead(ByteToMessageDecoder.java:244)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:308)
at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:294)
at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:846)
at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:131)
at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:511)
at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:468)
at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:382)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:354)
at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:111)
at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:137)
at java.lang.Thread.run(Thread.java:745)
Caused by: ERROR XSDB6: Another instance of Derby may have already booted the database /opt/spark-2.0.0-bin-hadoop2.6/R/metastore_db.
at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.privGetJBMSLockOnDB(Unknown Source)
at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.getJBMSLockOnDB(Unknown Source)
at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
at org.apache.derby.impl.services.monitor.FileMonitor.startModule(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
at org.apache.derby.impl.store.raw.RawStore.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
at org.apache.derby.impl.services.monitor.FileMonitor.startModule(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
at org.apache.derby.impl.store.access.RAMAccessManager.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
at org.apache.derby.impl.services.monitor.FileMonitor.startModule(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
at org.apache.derby.impl.db.BasicDatabase.bootStore(Unknown Source)
at org.apache.derby.impl.db.BasicDatabase.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.bootService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startProviderService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.findProviderAndStartService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startPersistentService(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.startPersistentService(Unknown Source)
... 112 more
```
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by shivaram <gi...@git.apache.org>.
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14177
LGTM. Merging into master
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by shivaram <gi...@git.apache.org>.
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14177
So I just tried the setup where I only have `enableHiveMetastore=F` for the test case we are uncommenting and the `sparkR.session.stop` added to the other test files as in this PR. That seems to work across 3-4 test runs. Is the the setup that leads to errors listed above ?
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/14177
**[Test build #62422 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/62422/consoleFull)** for PR 14177 at commit [`12899c5`](https://github.com/apache/spark/commit/12899c516547a2f5064639386c5a42530a345ec6).
* This patch passes all tests.
* This patch merges cleanly.
* This patch adds no public classes.
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:
https://github.com/apache/spark/pull/14177
Merged build finished. Test FAILed.
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by felixcheung <gi...@git.apache.org>.
Github user felixcheung commented on the issue:
https://github.com/apache/spark/pull/14177
No luck, but I push that change to see if it works better in Jenkins - is that what you are referring to?
I'm consistently getting these errors:
```
Error in invokeJava(isStatic = TRUE, className, methodName, ...) :
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.spark.sql.hive.client.IsolatedClientLoader.createClient(IsolatedClientLoader.scala:264)
at org.apache.spark.sql.hive.HiveUtils$.newClientForMetadata(HiveUtils.scala:358)
at org.apache.spark.sql.hive.HiveUtils$.newClientForMetadata(HiveUtils.scala:262)
at org.apache.spark.sql.hive.HiveSharedState.metadataHive$lzycompute(HiveSharedState.scala:39)
at org.apache.spark.sql.hive.HiveSharedState.metadataHive(HiveSharedState.scala:38)
at org.apache.spark.sql.hive.HiveSharedState.externalCatalog$lzycompute(HiveSharedState.scala:46)
at org.apache.spark.sql.hive.HiveSharedState.externa
Calls: test_package ... with_reporter -> force -> source_file -> eval -> eval
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.spark.sql.hive.client.IsolatedClientLoader.createClient(IsolatedClientLoader.scala:264)
at org.apache.spark.sql.hive.HiveUtils$.newClientForMetadata(HiveUtils.scala:358)
at org.apache.spark.sql.hive.HiveUtils$.newClientForMetadata(HiveUtils.scala:262)
at org.apache.spark.sql.hive.HiveSharedState.metadataHive$lzycompute(HiveSharedState.scala:39)
at org.apache.spark.sql.hive.HiveSharedState.metadataHive(HiveSharedState.scala:38)
at org.apache.spark.sql.hive.HiveSharedState.externalCatalog$lzycompute(HiveSharedState.scala:46)
at org.apache.spark.sql.hive.HiveSharedState.externalCatalog(HiveSharedState.scala:45)
at org.apache.spark.sql.hive.HiveSessionState.catalog$lzycompute(HiveSessionState.scala:50)
at org.apache.spark.sql.hive.HiveSessionState.catalog(HiveSessionState.scala:48)
at org.apache.spark.sql.hive.HiveSessionState$$anon$1.<init>(HiveSessionState.scala:63)
at org.apache.spark.sql.hive.HiveSessionState.analyzer$lzycompute(HiveSessionState.scala:63)
at org.apache.spark.sql.hive.HiveSessionState.analyzer(HiveSessionState.scala:62)
at org.apache.spark.sql.execution.QueryExecution.assertAnalyzed(QueryExecution.scala:49)
at org.apache.spark.sql.Dataset$.ofRows(Dataset.scala:64)
at org.apache.spark.sql.SparkSession.createDataFrame(SparkSession.scala:527)
at org.apache.spark.sql.SparkSession.createDataFrame(SparkSession.scala:291)
at org.apache.spark.sql.api.r.SQLUtils$.createDF(SQLUtils.scala:139)
at org.apache.spark.sql.api.r.SQLUtils.createDF(SQLUtils.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.api.r.RBackendHandler.handleMethodCall(RBackendHandler.scala:141)
at org.apache.spark.api.r.RBackendHandler.channelRead0(RBackendHandler.scala:86)
at org.apache.spark.api.r.RBackendHandler.channelRead0(RBackendHandler.scala:38)
at io.netty.channel.SimpleChannelInboundHandler.channelRead(SimpleChannelInboundHandler.java:105)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:308)
at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:294)
at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:103)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:308)
at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:294)
at io.netty.handler.codec.ByteToMessageDecoder.channelRead(ByteToMessageDecoder.java:244)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:308)
at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:294)
at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:846)
at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:131)
at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:511)
at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:468)
at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:382)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:354)
at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:111)
at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:137)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.RuntimeException: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:522)
at org.apache.spark.sql.hive.client.HiveClientImpl.<init>(HiveClientImpl.scala:171)
... 47 more
Caused by: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1523)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:503)
... 48 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
... 54 more
Caused by: javax.jdo.JDOFatalDataStoreException: Unable to open a test connection to the given database. JDBC url = jdbc:derby:;databaseName=metastore_db;create=true, username = APP. Terminating connection pool (set lazyInit to true if you expect to start your database after your app). Original Exception: ------
java.sql.SQLException: Failed to start database 'metastore_db' with class loader org.apache.spark.sql.hive.client.IsolatedClientLoader$$anon$1@2435f119, see the next exception for details.
at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.seeNextException(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.getNewEmbedConnection(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:208)
at com.jolbox.bonecp.BoneCP.obtainRawInternalConnection(BoneCP.java:361)
at com.jolbox.bonecp.BoneCP.<init>(BoneCP.java:416)
at com.jolbox.bonecp.BoneCPDataSource.getConnection(BoneCPDataSource.java:120)
at org.datanucleus.store.rdbms.ConnectionFactoryImpl$ManagedConnectionImpl.getConnection(ConnectionFactoryImpl.java:501)
at org.datanucleus.store.rdbms.RDBMSStoreManager.<init>(RDBMSStoreManager.java:298)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
at org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:301)
at org.datanucleus.NucleusContext.createStoreManagerForProperties(NucleusContext.java:1187)
at org.datanucleus.NucleusContext.initialise(NucleusContext.java:356)
at org.datanucleus.api.jdo.JDOPersiste
1: createDataFrame(data.frame(dummy = 1:i)) at /opt/spark-2.0.0-bin-hadoop2.6/R/lib/SparkR/tests/testthat/test_context.R:69
2: dispatchFunc("createDataFrame(data, schema = NULL, samplingRatio = 1.0)", x, ...)
3: f(x, ...)
4: callJStatic("org.apache.spark.sql.api.r.SQLUtils", "createDF", srdd, schema$jobj,
sparkSession)
5: invokeJava(isStatic = TRUE, className, methodName, ...)
6: stop(readString(conn))
```
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by felixcheung <gi...@git.apache.org>.
Github user felixcheung commented on the issue:
https://github.com/apache/spark/pull/14177
Sounds good to me! Thanks!
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by felixcheung <gi...@git.apache.org>.
Github user felixcheung commented on the issue:
https://github.com/apache/spark/pull/14177
Hive metastore didn't shutdown and restart cleanly was the original problem. it seemed to work better when SparkSession is starting with enableHiveSupport off. we do still have one in test_sparkSQL.R though.
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by felixcheung <gi...@git.apache.org>.
Github user felixcheung commented on the issue:
https://github.com/apache/spark/pull/14177
Jenkins failed with:
```
123456789a.bcdefghijklmnopqrstuvwxyzABCDS...EFGHIJKLMNOPQRSTUVW
[Stage 61:> (0 + 0) / 2]
XYZSFFFFFFFFFFFFError in invokeJava(isStatic = TRUE, className, methodName, ...) :
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
at org.apache.spark.sql.hive.client.IsolatedClientLoader.createClient(IsolatedClientLoader.scala:264)
at org.apache.spark.sql.hive.HiveUtils$.newClientForMetadata(HiveUtils.scala:358)
at org.apache.spark.sql.hive.HiveUtils$.newClientForMetadata(HiveUtils.scala:262)
at org.apache.spark.sql.hive.HiveSharedState.metadataHive$lzycompute(HiveSharedState.scala:39)
at org.apache.spark.sql.hive.HiveSharedState.metadataHive(HiveSharedState.scala:38)
at org.apache.spark.sql.hive.HiveSharedState.externalCatalog$lzycompute(HiveSharedState.scala:46)
at org.apache.spark.sql.hive.HiveSharedState.externa
```
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by shivaram <gi...@git.apache.org>.
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14177
Does the hive metastore not shutdown properly even if we do `sparkSession.stop()` in all the test files ? The reason I'm trying to avoid having `enableHiveMetastore=F` in most test files is that Hive enabled is true by default and hence closer to what users will see.
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/14177
**[Test build #62417 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/62417/consoleFull)** for PR 14177 at commit [`03f163a`](https://github.com/apache/spark/commit/03f163a660f7a4abd9d99449524396ad91830e24).
* This patch **fails SparkR unit tests**.
* This patch merges cleanly.
* This patch adds no public classes.
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by SparkQA <gi...@git.apache.org>.
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**[Test build #62418 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/62418/consoleFull)** for PR 14177 at commit [`c7e7592`](https://github.com/apache/spark/commit/c7e7592090a2e3ef84029bc9112ce27abf085e40).
* This patch **fails SparkR unit tests**.
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by felixcheung <gi...@git.apache.org>.
Github user felixcheung commented on the issue:
https://github.com/apache/spark/pull/14177
Agreed - this could be a bug in SQL/Hive, I'd be interested in digging into it a bit more later next week.
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
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[GitHub] spark pull request #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession in...
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by shivaram <gi...@git.apache.org>.
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14177
I just realized that my local build was not using the hive profile. If this fails on Jenkins let's just go back to the original PR. Also I wonder if this is something we should notify the SQL commiters about
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by shivaram <gi...@git.apache.org>.
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14177
Is there a reason why `enableHiveSupport = F` is required in all the test cases ?
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/14177
**[Test build #62226 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/62226/consoleFull)** for PR 14177 at commit [`1a86e85`](https://github.com/apache/spark/commit/1a86e857ab954620fb33dde8667f3a2a7d5138dc).
* This patch passes all tests.
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/14177
**[Test build #62419 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/62419/consoleFull)** for PR 14177 at commit [`bec4b33`](https://github.com/apache/spark/commit/bec4b3372d8e861d8b3f7c04cf4675a02918808f).
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[GitHub] spark issue #14177: [SPARK-16027][SPARKR] Fix R tests SparkSession init/stop
Posted by shivaram <gi...@git.apache.org>.
Github user shivaram commented on the issue:
https://github.com/apache/spark/pull/14177
@felixcheung I plan to merge this into master but skip branch-2.0 as I dont want to introduce new test errors if we have another RC. Let me know if that sounds good
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