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Posted to dev@ctakes.apache.org by "Finan, Sean" <Se...@childrens.harvard.edu> on 2021/08/18 14:28:29 UTC
Re: An exception occured while executing the Java class. URI is not
hierarchical [EXTERNAL]
Hi Benjamin,
My first question is: what pipeline are you trying to run?
My second question is: Do you really need to use LVG?
Sean
________________________________________
From: Benjamin hansen <be...@gmail.com>
Sent: Wednesday, August 18, 2021 3:07 AM
To: dev@ctakes.apache.org
Subject: An exception occured while executing the Java class. URI is not hierarchical [EXTERNAL]
* External Email - Caution *
While working at a simple pipeline example I got this error:
*java.lang.IllegalArgumentException*: *URI is not hierarchical*
*at* java.io.File.<init> (*File.java:420*)
*at* org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load (
*LvgCmdApiResourceImpl.java:65*)
I found that this issue has already been reported 4 years ago here
https://urldefense.com/v3/__https://issues.apache.org/jira/browse/CTAKES-445__;!!NZvER7FxgEiBAiR_!9HBmXkq30TUdwnSpuHc8_7iEVkoMAiJ3p_rSTXE5d90TARHEdioOMNukOUaL6eB5CboTRBMsOYI$
I am on MacOS which the workaround patched proposed in that thread does not
fix... And like the last comment in the thread says - the patch likely also
does not work on linux.
This seems to be quite a serious bug since both mac and linux would be
serious development and production platforms for ctakes users.
Is there no fix for this after 4 years?
Re: An exception occured while executing the Java class. URI is not
hierarchical [EXTERNAL]
Posted by Benjamin hansen <be...@gmail.com>.
Hi Peter,
Thanks for the information. So as I understand it from your post the
following 2 pipelines are equivalent:
a)
public static AnalysisEngineDescription getTokenProcessingPipeline()
throws ResourceInitializationException, MalformedURLException {
AggregateBuilder builder = new AggregateBuilder();
builder.add( SimpleSegmentAnnotator.createAnnotatorDescription() );
builder.add( SentenceDetector.createAnnotatorDescription() );
builder.add(ClearNLPDependencyParserAE.createAnnotatorDescription());
builder.add(
ContextDependentTokenizerAnnotator.createAnnotatorDescription() );
builder.add( POSTagger.createAnnotatorDescription() );
return builder.createAggregateDescription();
}
b)
public static AnalysisEngineDescription getTokenProcessingPipeline()
throws ResourceInitializationException, MalformedURLException {
AggregateBuilder builder = new AggregateBuilder();
builder.add( SimpleSegmentAnnotator.createAnnotatorDescription() );
builder.add( SentenceDetector.createAnnotatorDescription() );
builder.add( TokenizerAnnotatorPTB.createAnnotatorDescription() );
builder.add( LvgAnnotator.createAnnotatorDescription() );
builder.add(
ContextDependentTokenizerAnnotator.createAnnotatorDescription() );
builder.add( POSTagger.createAnnotatorDescription() );
return builder.createAggregateDescription();
}
The difference between the 2 is that a) has
builder.add(ClearNLPDependencyParserAE.createAnnotatorDescription());
instead of
builder.add( TokenizerAnnotatorPTB.createAnnotatorDescription() );
builder.add( LvgAnnotator.createAnnotatorDescription() );
in b)
Is that correctly understood?
On Thu, Aug 19, 2021 at 7:53 PM Peter Abramowitsch <pa...@gmail.com>
wrote:
> RE the Dependency Parser, it is part of the release.
> Just use the PiperCreator app and look for it in the list of modules. It
> will tell you it's prerequisites, and therefore where in your Piper file it
> belongs.
>
> addDescription ClearNLPDependencyParserAE
>
> - Peter
>
> On Thu, Aug 19, 2021 at 2:39 AM Benjamin hansen <
> benjaminkakkesen@gmail.com>
> wrote:
>
> > Thanks for the input.
> > So I am trying to use
> > the ClinicalPipelineFactory.getTokenProcessingPipeline which includes the
> > LVG which seems to be having the issue. But you say i can just replace
> the
> > LVG part with the DependencyParser in that pipeline? Can you elaborate a
> > bit on where I can find the DependencyParser?
> >
> >
> > On Wed, Aug 18, 2021 at 5:56 PM Peter Abramowitsch <
> > pabramowitsch@gmail.com>
> > wrote:
> >
> > > Hi Benjamin,
> > >
> > > If what you're looking for are the lemmas of tokens, just use the
> > > DependencyParser instead of LVG
> > > I had another problem with LVG as well, but I think that it might be
> > simply
> > > that all the needed resources are not being copied into the right
> place.
> > > This was done without the lvg
> > >
> > > {
> > > "_type": "ConllDependencyNode",
> > > "sofa": 1,
> > > "begin": 3,
> > > "end": 10,
> > > "id": 2,
> > > "form": "decided",
> > > "lemma": "decide",
> > > "cpostag": "VBD",
> > > "postag": "VBD",
> > > "feats": "_",
> > > "head": 137,
> > > "deprel": "root",
> > > "pdeprel": "_"
> > > }
> > >
> > > On Wed, Aug 18, 2021 at 7:29 AM Finan, Sean <
> > > Sean.Finan@childrens.harvard.edu> wrote:
> > >
> > > > Hi Benjamin,
> > > >
> > > > My first question is: what pipeline are you trying to run?
> > > >
> > > > My second question is: Do you really need to use LVG?
> > > >
> > > > Sean
> > > > ________________________________________
> > > > From: Benjamin hansen <be...@gmail.com>
> > > > Sent: Wednesday, August 18, 2021 3:07 AM
> > > > To: dev@ctakes.apache.org
> > > > Subject: An exception occured while executing the Java class. URI is
> > not
> > > > hierarchical [EXTERNAL]
> > > >
> > > > * External Email - Caution *
> > > >
> > > >
> > > > While working at a simple pipeline example I got this error:
> > > >
> > > > *java.lang.IllegalArgumentException*: *URI is not hierarchical*
> > > >
> > > > *at* java.io.File.<init> (*File.java:420*)
> > > >
> > > > *at* org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load (
> > > > *LvgCmdApiResourceImpl.java:65*)
> > > >
> > > >
> > > > I found that this issue has already been reported 4 years ago here
> > > >
> > > >
> > >
> >
> https://urldefense.com/v3/__https://issues.apache.org/jira/browse/CTAKES-445__;!!NZvER7FxgEiBAiR_!9HBmXkq30TUdwnSpuHc8_7iEVkoMAiJ3p_rSTXE5d90TARHEdioOMNukOUaL6eB5CboTRBMsOYI$
> > > >
> > > >
> > > > I am on MacOS which the workaround patched proposed in that thread
> does
> > > not
> > > > fix... And like the last comment in the thread says - the patch
> likely
> > > also
> > > > does not work on linux.
> > > >
> > > >
> > > > This seems to be quite a serious bug since both mac and linux would
> be
> > > > serious development and production platforms for ctakes users.
> > > >
> > > >
> > > > Is there no fix for this after 4 years?
> > > >
> > >
> >
>
Re: An exception occured while executing the Java class. URI is not
hierarchical [EXTERNAL]
Posted by Peter Abramowitsch <pa...@gmail.com>.
RE the Dependency Parser, it is part of the release.
Just use the PiperCreator app and look for it in the list of modules. It
will tell you it's prerequisites, and therefore where in your Piper file it
belongs.
addDescription ClearNLPDependencyParserAE
- Peter
On Thu, Aug 19, 2021 at 2:39 AM Benjamin hansen <be...@gmail.com>
wrote:
> Thanks for the input.
> So I am trying to use
> the ClinicalPipelineFactory.getTokenProcessingPipeline which includes the
> LVG which seems to be having the issue. But you say i can just replace the
> LVG part with the DependencyParser in that pipeline? Can you elaborate a
> bit on where I can find the DependencyParser?
>
>
> On Wed, Aug 18, 2021 at 5:56 PM Peter Abramowitsch <
> pabramowitsch@gmail.com>
> wrote:
>
> > Hi Benjamin,
> >
> > If what you're looking for are the lemmas of tokens, just use the
> > DependencyParser instead of LVG
> > I had another problem with LVG as well, but I think that it might be
> simply
> > that all the needed resources are not being copied into the right place.
> > This was done without the lvg
> >
> > {
> > "_type": "ConllDependencyNode",
> > "sofa": 1,
> > "begin": 3,
> > "end": 10,
> > "id": 2,
> > "form": "decided",
> > "lemma": "decide",
> > "cpostag": "VBD",
> > "postag": "VBD",
> > "feats": "_",
> > "head": 137,
> > "deprel": "root",
> > "pdeprel": "_"
> > }
> >
> > On Wed, Aug 18, 2021 at 7:29 AM Finan, Sean <
> > Sean.Finan@childrens.harvard.edu> wrote:
> >
> > > Hi Benjamin,
> > >
> > > My first question is: what pipeline are you trying to run?
> > >
> > > My second question is: Do you really need to use LVG?
> > >
> > > Sean
> > > ________________________________________
> > > From: Benjamin hansen <be...@gmail.com>
> > > Sent: Wednesday, August 18, 2021 3:07 AM
> > > To: dev@ctakes.apache.org
> > > Subject: An exception occured while executing the Java class. URI is
> not
> > > hierarchical [EXTERNAL]
> > >
> > > * External Email - Caution *
> > >
> > >
> > > While working at a simple pipeline example I got this error:
> > >
> > > *java.lang.IllegalArgumentException*: *URI is not hierarchical*
> > >
> > > *at* java.io.File.<init> (*File.java:420*)
> > >
> > > *at* org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load (
> > > *LvgCmdApiResourceImpl.java:65*)
> > >
> > >
> > > I found that this issue has already been reported 4 years ago here
> > >
> > >
> >
> https://urldefense.com/v3/__https://issues.apache.org/jira/browse/CTAKES-445__;!!NZvER7FxgEiBAiR_!9HBmXkq30TUdwnSpuHc8_7iEVkoMAiJ3p_rSTXE5d90TARHEdioOMNukOUaL6eB5CboTRBMsOYI$
> > >
> > >
> > > I am on MacOS which the workaround patched proposed in that thread does
> > not
> > > fix... And like the last comment in the thread says - the patch likely
> > also
> > > does not work on linux.
> > >
> > >
> > > This seems to be quite a serious bug since both mac and linux would be
> > > serious development and production platforms for ctakes users.
> > >
> > >
> > > Is there no fix for this after 4 years?
> > >
> >
>
Re: An exception occured while executing the Java class. URI is not
hierarchical [EXTERNAL]
Posted by Benjamin hansen <be...@gmail.com>.
Btw. the full stacktrace is as follows:
19 Aug 2021 13:11:20 INFO LvgAnnotator - URL for lvg.properties
=file:/Users/myuser/.m2/repository/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties
19 Aug 2021 13:11:20 INFO SentenceDetector - Sentence detector model file:
org/apache/ctakes/core/sentdetect/sd-med-model.zip
19 Aug 2021 13:11:20 INFO TokenizerAnnotatorPTB - Initializing
org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
[WARNING]
java.lang.IllegalArgumentException: URI is not hierarchical
at java.io.File.<init> (File.java:420)
at org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load
(LvgCmdApiResourceImpl.java:65)
at org.apache.uima.resource.impl.ResourceManager_impl.registerResource
(ResourceManager_impl.java:753)
at
org.apache.uima.resource.impl.ResourceManager_impl.initializeExternalResources
(ResourceManager_impl.java:597)
at org.apache.uima.resource.Resource_ImplBase.initialize
(Resource_ImplBase.java:210)
at
org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initialize
(AnalysisEngineImplBase.java:157)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize
(PrimitiveAnalysisEngine_impl.java:136)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource
(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource
(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource
(UIMAFramework.java:279)
at org.apache.uima.UIMAFramework.produceAnalysisEngine
(UIMAFramework.java:407)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup
(ASB_impl.java:256)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB
(AggregateAnalysisEngine_impl.java:435)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine
(AggregateAnalysisEngine_impl.java:379)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize
(AggregateAnalysisEngine_impl.java:192)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource
(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource
(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource
(UIMAFramework.java:279)
at org.apache.uima.UIMAFramework.produceAnalysisEngine
(UIMAFramework.java:407)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup
(ASB_impl.java:256)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB
(AggregateAnalysisEngine_impl.java:435)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine
(AggregateAnalysisEngine_impl.java:379)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize
(AggregateAnalysisEngine_impl.java:192)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource
(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource
(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource
(UIMAFramework.java:279)
at org.apache.uima.UIMAFramework.produceAnalysisEngine
(UIMAFramework.java:407)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup
(ASB_impl.java:256)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB
(AggregateAnalysisEngine_impl.java:435)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine
(AggregateAnalysisEngine_impl.java:379)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize
(AggregateAnalysisEngine_impl.java:192)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource
(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource
(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource
(UIMAFramework.java:279)
at org.apache.uima.UIMAFramework.produceResource
(UIMAFramework.java:331)
at org.apache.uima.UIMAFramework.produceAnalysisEngine
(UIMAFramework.java:448)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine
(AnalysisEngineFactory.java:206)
at org.apache.uima.fit.pipeline.SimplePipeline.runPipeline
(SimplePipeline.java:296)
at org.apache.uima.fit.pipeline.SimplePipeline.runPipeline
(SimplePipeline.java:329)
at com.careindexing.app.HelloWorldAggregatePipeline.main
(HelloWorldAggregatePipeline.java:64)
at org.codehaus.mojo.exec.ExecJavaMojo$1.run (ExecJavaMojo.java:254)
at java.lang.Thread.run (Thread.java:748)
[INFO]
------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO]
------------------------------------------------------------------------
[INFO] Total time: 1.874 s
[INFO] Finished at: 2021-08-19T13:11:20+02:00
On Thu, Aug 19, 2021 at 11:38 AM Benjamin hansen <be...@gmail.com>
wrote:
> Thanks for the input.
> So I am trying to use
> the ClinicalPipelineFactory.getTokenProcessingPipeline which includes the
> LVG which seems to be having the issue. But you say i can just replace the
> LVG part with the DependencyParser in that pipeline? Can you elaborate a
> bit on where I can find the DependencyParser?
>
>
> On Wed, Aug 18, 2021 at 5:56 PM Peter Abramowitsch <
> pabramowitsch@gmail.com> wrote:
>
>> Hi Benjamin,
>>
>> If what you're looking for are the lemmas of tokens, just use the
>> DependencyParser instead of LVG
>> I had another problem with LVG as well, but I think that it might be
>> simply
>> that all the needed resources are not being copied into the right place.
>> This was done without the lvg
>>
>> {
>> "_type": "ConllDependencyNode",
>> "sofa": 1,
>> "begin": 3,
>> "end": 10,
>> "id": 2,
>> "form": "decided",
>> "lemma": "decide",
>> "cpostag": "VBD",
>> "postag": "VBD",
>> "feats": "_",
>> "head": 137,
>> "deprel": "root",
>> "pdeprel": "_"
>> }
>>
>> On Wed, Aug 18, 2021 at 7:29 AM Finan, Sean <
>> Sean.Finan@childrens.harvard.edu> wrote:
>>
>> > Hi Benjamin,
>> >
>> > My first question is: what pipeline are you trying to run?
>> >
>> > My second question is: Do you really need to use LVG?
>> >
>> > Sean
>> > ________________________________________
>> > From: Benjamin hansen <be...@gmail.com>
>> > Sent: Wednesday, August 18, 2021 3:07 AM
>> > To: dev@ctakes.apache.org
>> > Subject: An exception occured while executing the Java class. URI is not
>> > hierarchical [EXTERNAL]
>> >
>> > * External Email - Caution *
>> >
>> >
>> > While working at a simple pipeline example I got this error:
>> >
>> > *java.lang.IllegalArgumentException*: *URI is not hierarchical*
>> >
>> > *at* java.io.File.<init> (*File.java:420*)
>> >
>> > *at* org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load (
>> > *LvgCmdApiResourceImpl.java:65*)
>> >
>> >
>> > I found that this issue has already been reported 4 years ago here
>> >
>> >
>> https://urldefense.com/v3/__https://issues.apache.org/jira/browse/CTAKES-445__;!!NZvER7FxgEiBAiR_!9HBmXkq30TUdwnSpuHc8_7iEVkoMAiJ3p_rSTXE5d90TARHEdioOMNukOUaL6eB5CboTRBMsOYI$
>> >
>> >
>> > I am on MacOS which the workaround patched proposed in that thread does
>> not
>> > fix... And like the last comment in the thread says - the patch likely
>> also
>> > does not work on linux.
>> >
>> >
>> > This seems to be quite a serious bug since both mac and linux would be
>> > serious development and production platforms for ctakes users.
>> >
>> >
>> > Is there no fix for this after 4 years?
>> >
>>
>
Re: An exception occured while executing the Java class. URI is not
hierarchical [EXTERNAL]
Posted by Benjamin hansen <be...@gmail.com>.
Thanks for the input.
So I am trying to use
the ClinicalPipelineFactory.getTokenProcessingPipeline which includes the
LVG which seems to be having the issue. But you say i can just replace the
LVG part with the DependencyParser in that pipeline? Can you elaborate a
bit on where I can find the DependencyParser?
On Wed, Aug 18, 2021 at 5:56 PM Peter Abramowitsch <pa...@gmail.com>
wrote:
> Hi Benjamin,
>
> If what you're looking for are the lemmas of tokens, just use the
> DependencyParser instead of LVG
> I had another problem with LVG as well, but I think that it might be simply
> that all the needed resources are not being copied into the right place.
> This was done without the lvg
>
> {
> "_type": "ConllDependencyNode",
> "sofa": 1,
> "begin": 3,
> "end": 10,
> "id": 2,
> "form": "decided",
> "lemma": "decide",
> "cpostag": "VBD",
> "postag": "VBD",
> "feats": "_",
> "head": 137,
> "deprel": "root",
> "pdeprel": "_"
> }
>
> On Wed, Aug 18, 2021 at 7:29 AM Finan, Sean <
> Sean.Finan@childrens.harvard.edu> wrote:
>
> > Hi Benjamin,
> >
> > My first question is: what pipeline are you trying to run?
> >
> > My second question is: Do you really need to use LVG?
> >
> > Sean
> > ________________________________________
> > From: Benjamin hansen <be...@gmail.com>
> > Sent: Wednesday, August 18, 2021 3:07 AM
> > To: dev@ctakes.apache.org
> > Subject: An exception occured while executing the Java class. URI is not
> > hierarchical [EXTERNAL]
> >
> > * External Email - Caution *
> >
> >
> > While working at a simple pipeline example I got this error:
> >
> > *java.lang.IllegalArgumentException*: *URI is not hierarchical*
> >
> > *at* java.io.File.<init> (*File.java:420*)
> >
> > *at* org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load (
> > *LvgCmdApiResourceImpl.java:65*)
> >
> >
> > I found that this issue has already been reported 4 years ago here
> >
> >
> https://urldefense.com/v3/__https://issues.apache.org/jira/browse/CTAKES-445__;!!NZvER7FxgEiBAiR_!9HBmXkq30TUdwnSpuHc8_7iEVkoMAiJ3p_rSTXE5d90TARHEdioOMNukOUaL6eB5CboTRBMsOYI$
> >
> >
> > I am on MacOS which the workaround patched proposed in that thread does
> not
> > fix... And like the last comment in the thread says - the patch likely
> also
> > does not work on linux.
> >
> >
> > This seems to be quite a serious bug since both mac and linux would be
> > serious development and production platforms for ctakes users.
> >
> >
> > Is there no fix for this after 4 years?
> >
>
Re: An exception occured while executing the Java class. URI is not
hierarchical [EXTERNAL]
Posted by Peter Abramowitsch <pa...@gmail.com>.
Hi Benjamin,
If what you're looking for are the lemmas of tokens, just use the
DependencyParser instead of LVG
I had another problem with LVG as well, but I think that it might be simply
that all the needed resources are not being copied into the right place.
This was done without the lvg
{
"_type": "ConllDependencyNode",
"sofa": 1,
"begin": 3,
"end": 10,
"id": 2,
"form": "decided",
"lemma": "decide",
"cpostag": "VBD",
"postag": "VBD",
"feats": "_",
"head": 137,
"deprel": "root",
"pdeprel": "_"
}
On Wed, Aug 18, 2021 at 7:29 AM Finan, Sean <
Sean.Finan@childrens.harvard.edu> wrote:
> Hi Benjamin,
>
> My first question is: what pipeline are you trying to run?
>
> My second question is: Do you really need to use LVG?
>
> Sean
> ________________________________________
> From: Benjamin hansen <be...@gmail.com>
> Sent: Wednesday, August 18, 2021 3:07 AM
> To: dev@ctakes.apache.org
> Subject: An exception occured while executing the Java class. URI is not
> hierarchical [EXTERNAL]
>
> * External Email - Caution *
>
>
> While working at a simple pipeline example I got this error:
>
> *java.lang.IllegalArgumentException*: *URI is not hierarchical*
>
> *at* java.io.File.<init> (*File.java:420*)
>
> *at* org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load (
> *LvgCmdApiResourceImpl.java:65*)
>
>
> I found that this issue has already been reported 4 years ago here
>
> https://urldefense.com/v3/__https://issues.apache.org/jira/browse/CTAKES-445__;!!NZvER7FxgEiBAiR_!9HBmXkq30TUdwnSpuHc8_7iEVkoMAiJ3p_rSTXE5d90TARHEdioOMNukOUaL6eB5CboTRBMsOYI$
>
>
> I am on MacOS which the workaround patched proposed in that thread does not
> fix... And like the last comment in the thread says - the patch likely also
> does not work on linux.
>
>
> This seems to be quite a serious bug since both mac and linux would be
> serious development and production platforms for ctakes users.
>
>
> Is there no fix for this after 4 years?
>