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Posted to issues@beam.apache.org by "Jiaxin Shan (Jira)" <ji...@apache.org> on 2020/08/21 20:24:00 UTC
[jira] [Created] (BEAM-10790) tar.gz artifacts written into fat jar
is no longer gzip file
Jiaxin Shan created BEAM-10790:
----------------------------------
Summary: tar.gz artifacts written into fat jar is no longer gzip file
Key: BEAM-10790
URL: https://issues.apache.org/jira/browse/BEAM-10790
Project: Beam
Issue Type: Bug
Components: runner-flink
Environment: Flink 1.10.1
Beam worker pool: apache/beam_python3.6_sdk:2.22.0
SDK: apache beam 2.22.0
Python 3.6
Reporter: Jiaxin Shan
I am using Flink Runner on Kubernetes. The problem I meet is zip file is kind of broken after going through the artifact server.
# application persist a dependency dist file tfx_ephemeral-0.22.0.tar.gz and pass `--extra_package=/tmp/tmpsm0_ll8e/build/tfx/dist/tfx_ephemeral-0.22.0.tar.gz` to beam args
# artifact service will retrieve it from artifact server and append into uber jar.
FROM: 'ref_Environment_default_environment_1', dependencies '[type_urn: "beam:artifact:type:file:v1"
27type_payload: "\n;/tmp/tmpsm0_ll8e/build/tfx/dist/tfx_ephemeral-0.22.0.tar.gz"
TO: `/BEAM-PIPLINE/pipeline/artifacts/job-${uuid}/${hash}-tfx_ephemeral-0.22.0.tar.gz`
# beam python worker pool will get dependency from uber jar and put it under /tmp/staged/
I originally find this problem in step 3. I tried to trace the problem and notice it is from step 2. the code snippet is here.
[https://github.com/apache/beam/blob/3d0f7dc011bb7bbee4eea9525b82f53855de85f1/sdks/python/apache_beam/runners/portability/artifact_service.py#L306-L310]
Logs from Application
```
INFO:root:Using Python SDK docker image: apache/beam_python3.6_sdk:2.22.0. If the image is not available at local, we will try to pull from hub.docker.com
19INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function lift_combiners at 0x7fe51595dea0> ====================
20INFO:apache_beam.runners.portability.flink_runner:Adding HTTP protocol scheme to flink_master parameter: [http://beam-flink-cluster-jobmanager:8081|http://beam-flink-cluster-jobmanager:8081/]
21INFO:apache_beam.runners.portability.abstract_job_service:Got Prepare request.
22INFO:apache_beam.utils.subprocess_server:Downloading job server jar from [https://repo.maven.apache.org/maven2/org/apache/beam/beam-runners-flink-1.10-job-server/2.22.0/beam-runners-flink-1.10-job-server-2.22.0.jar]
23INFO:apache_beam.runners.portability.abstract_job_service:Artifact server started on port 44337
24INFO:apache_beam.runners.portability.abstract_job_service:Prepared job 'job' as 'job-880904cc-ec5e-490a-ba93-8e18d87fbd89'
25INFO:apache_beam.runners.portability.artifact_service:staging token: 'job-880904cc-ec5e-490a-ba93-8e18d87fbd89'
26INFO:apache_beam.runners.portability.artifact_service:artifact service key: 'ref_Environment_default_environment_1', dependencies '[type_urn: "beam:artifact:type:file:v1"
27type_payload: "\n;/tmp/tmpsm0_ll8e/build/tfx/dist/tfx_ephemeral-0.22.0.tar.gz"
INFO:apache_beam.runners.portability.abstract_job_service:Running job 'job-880904cc-ec5e-490a-ba93-8e18d87fbd89'
51INFO:apache_beam.runners.portability.flink_uber_jar_job_server:Started Flink job as bedeef0503bf0a17e3461169e2c9b5bc
52INFO:apache_beam.runners.portability.portable_runner:Job state changed to STOPPED
53INFO:apache_beam.runners.portability.portable_runner:Job state changed to RUNNING
```
The job never finish because exception in beam worker pool
Logs from beam worker pool.
```
2020/08/21 18:29:46 Installing extra package: tfx_ephemeral-0.22.0.tar.gz
ERROR: Exception:
Traceback (most recent call last):
File "/usr/local/lib/python3.6/tarfile.py", line 1643, in gzopen
t = cls.taropen(name, mode, fileobj, **kwargs)
File "/usr/local/lib/python3.6/tarfile.py", line 1619, in taropen
return cls(name, mode, fileobj, **kwargs)
File "/usr/local/lib/python3.6/tarfile.py", line 1482, in __init__
self.firstmember = self.next()
File "/usr/local/lib/python3.6/tarfile.py", line 2297, in next
tarinfo = self.tarinfo.fromtarfile(self)
File "/usr/local/lib/python3.6/tarfile.py", line 1092, in fromtarfile
buf = tarfile.fileobj.read(BLOCKSIZE)
File "/usr/local/lib/python3.6/gzip.py", line 276, in read
return self._buffer.read(size)
File "/usr/local/lib/python3.6/_compression.py", line 68, in readinto
data = self.read(len(byte_view))
File "/usr/local/lib/python3.6/gzip.py", line 463, in read
if not self._read_gzip_header():
File "/usr/local/lib/python3.6/gzip.py", line 411, in _read_gzip_header
raise OSError('Not a gzipped file (%r)' % magic)
OSError: Not a gzipped file (b'tf')
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.6/site-packages/pip/_internal/cli/base_command.py", line 188, in _main
status = self.run(options, args)
File "/usr/local/lib/python3.6/site-packages/pip/_internal/cli/req_command.py", line 185, in wrapper
return func(self, options, args)
File "/usr/local/lib/python3.6/site-packages/pip/_internal/commands/install.py", line 333, in run
reqs, check_supported_wheels=not options.target_dir
File "/usr/local/lib/python3.6/site-packages/pip/_internal/resolution/legacy/resolver.py", line 179, in resolve
discovered_reqs.extend(self._resolve_one(requirement_set, req))
File "/usr/local/lib/python3.6/site-packages/pip/_internal/resolution/legacy/resolver.py", line 362, in _resolve_one
abstract_dist = self._get_abstract_dist_for(req_to_install)
File "/usr/local/lib/python3.6/site-packages/pip/_internal/resolution/legacy/resolver.py", line 314, in _get_abstract_dist_for
abstract_dist = self.preparer.prepare_linked_requirement(req)
File "/usr/local/lib/python3.6/site-packages/pip/_internal/operations/prepare.py", line 469, in prepare_linked_requirement
hashes=hashes,
File "/usr/local/lib/python3.6/site-packages/pip/_internal/operations/prepare.py", line 264, in unpack_url
unpack_file(file.path, location, file.content_type)
File "/usr/local/lib/python3.6/site-packages/pip/_internal/utils/unpacking.py", line 261, in unpack_file
untar_file(filename, location)
File "/usr/local/lib/python3.6/site-packages/pip/_internal/utils/unpacking.py", line 177, in untar_file
tar = tarfile.open(filename, mode)
File "/usr/local/lib/python3.6/tarfile.py", line 1589, in open
return func(name, filemode, fileobj, **kwargs)
File "/usr/local/lib/python3.6/tarfile.py", line 1647, in gzopen
raise ReadError("not a gzip file")
```
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