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Posted to dev@ctakes.apache.org by Pei Chen <ch...@apache.org> on 2015/04/08 22:48:59 UTC

Re: Question about how to interpret Ctakes output

[+dev]
Yu,
Check out the type system:
http://svn.apache.org/repos/asf/ctakes/trunk/ctakes-type-system/src/main/resources/org/apache/ctakes/typesystem/types/TypeSystem.xml

Note:  I believe what you really want is
*org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
and not *org.apache.ctakes.assertion.medfacts.types.Concept (anything in
the assertion.medfacts* is really an internal construct not intended to be
used outside of the assertion module)

*IdentifiedAnnotation.*ontologyConceptArr[] contains the array of
*org.apache.ctakes.typesystem.type.refsem.OntologyConcept/UMLSConcept*


On Wed, Apr 8, 2015 at 3:53 PM, Liang, Yu <Yu...@nyumc.org> wrote:

>  Dear Pei,
>
>  Thank you for your previous help, I think I figure out how to run Ctakes
> by command line using “AggregateCdaUMLSProcessor.xml” Analysis Engine.
> But I am wondering is there any tutorial like how to interpret the xml
> results specifically the part that containing “ConceptText="
>
>  For example:
>
>   <org.apache.ctakes.assertion.medfacts.types.Concept _indexed="2" _id=
> "34678" _ref_sofa="15" begin="202" end="215" conceptType="PROBLEM"
> conceptText="Date of Birth" externalId="0" originalEntityExternalId="13854
> ”/>
>
>  what does “_id” , “_ref_sofa”, “originalEntityExternalId”, etc. mean?
>
>  Appreciate!
>
>
>
>   Yu Liang
>
>  CHIBI
>
>
>
>
>
>