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Posted to commits@ctakes.apache.org by bu...@apache.org on 2015/03/07 15:42:45 UTC
svn commit: r942756 - in /websites/staging/ctakes/trunk: cgi-bin/ content/
content/usedby.html
Author: buildbot
Date: Sat Mar 7 14:42:44 2015
New Revision: 942756
Log:
Staging update by buildbot for ctakes
Modified:
websites/staging/ctakes/trunk/cgi-bin/ (props changed)
websites/staging/ctakes/trunk/content/ (props changed)
websites/staging/ctakes/trunk/content/usedby.html
Propchange: websites/staging/ctakes/trunk/cgi-bin/
------------------------------------------------------------------------------
--- cms:source-revision (original)
+++ cms:source-revision Sat Mar 7 14:42:44 2015
@@ -1 +1 @@
-1664748
+1664859
Propchange: websites/staging/ctakes/trunk/content/
------------------------------------------------------------------------------
--- cms:source-revision (original)
+++ cms:source-revision Sat Mar 7 14:42:44 2015
@@ -1 +1 @@
-1664748
+1664859
Modified: websites/staging/ctakes/trunk/content/usedby.html
==============================================================================
--- websites/staging/ctakes/trunk/content/usedby.html (original)
+++ websites/staging/ctakes/trunk/content/usedby.html Sat Mar 7 14:42:44 2015
@@ -123,45 +123,107 @@
<!--- BEGIN MAIN CONTENT -->
<div class="container">
<div class="row">
- <h1> Who's using cTAKES? </h1>
- <p> There are a variety of different organizations using and working on cTAKES.</p>
+ <h1> Users of cTAKES </h1>
</div>
+
<div class="row">
<h2>Academic</h2>
+
<p class="lead">
Hospitals and Academic Institutions
</p>
- <p> Insert images for the different institutions </p>
+
<p>Boston Children's Hospital</p>
+
<p>Cincinnati Childrenâs Hospital</p>
+
<p>Mayo Clinic</p>
+
<p>University of Colorado Boulder</p>
+
<p>University of Pittsburgh</p>
+
<p>University of California, San Diego</p>
</div>
- <div class="row">
+
+<p><div class="row">
<h2>Software Projects</h2>
- </div>
- <div class="row">
- <h2>Companies</h2>
- <p><a href="http://wwww.wiredinformatics.com">Wired Informatics</a></p>
- </div>
- <div class="row">
- <h2>Publications</h2>
- </div>
- <div class="row">
- <div class="col-md-5 col-sm-5 col-padded-top col-center">
- <div style="width: 100%; max-width: 272px; display: inline-block; text-align: center;">
- <img src="images/pb-ctakes.jpg" style="margin-top: 15px; width: 100%; max-width: 200px;"/>
- <div class="caption" style="min-width: 272px;">Click <a href="mailto:dev@ctakes.apache.org"> here</a> to add
- your name/organization.
- </div>
- </div>
- </div>
- </div>
+ </div></p>
+<p><div class="row">
+ <h2>Companies</h2></p>
+<div class="codehilite"><pre> <span class="nt"><p><a</span> <span class="na">href=</span><span class="s">"http://wwww.wiredinformatics.com"</span><span class="nt">></span>Wired Informatics<span class="nt"></a></p></span>
+</pre></div>
+
+
</div>
+<p><div class="row">
+ <h2>Publications</h2></p>
+<div class="codehilite"><pre> <span class="nt"><h3></span> If you wish to cite cTAKES in a publication, please use: <span class="nt"></h3></span>
+
+ <span class="nt"><p></span> Savova, Guergana; Masanz, James; Ogren, Philip; Zheng, Jiaping; Sohn, Sunghwan; Kipper-Schuler, Karin and Chute, Christopher. 2010. Mayo Clinic Clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications. JAMIA 2010;17:507-513 doi:10.1136/jamia.2009.001560 <span class="nt"></p></span>
+
+ <span class="nt"><h3></span> Other cTAKES publications describing different components and applications: <span class="nt"></h3></span>
+
+ <span class="nt"><p></span> Chen Lin, Helena Canhao, Timothy Miller, Dmitriy Dligach, Robert M. Plenge, Elizabeth W. Karlson, Guergana Savova. 2012. Feature Engineering and Selection for Rheumatoid Arthritis Disease Activity Classification Using Electronic Medical Records. International Conference of Machine Learning (ICML) Workshop on Machine Learning for Clinical Data. <span class="nt"></p></span>
+
+ <span class="nt"><p></span> Chen Lin, Timothy Miller, Dmitriy Dligach, Robert M. Plenge, Elizabeth W. Karlson, Guergana Savova. 2012. Maximal Information Coefficient for Feature Selection for Clinical Document Classification. International Conference on Machine Learning Workshop on Machine Learning for Clinical Data. <span class="nt"></p></span>
+
+ <span class="nt"><p></span> Miller, Timothy; Dligach, Dmitriy; Savova, Guergana. 2012. Active learning for Coreference Resolution in the Biomedical Domain. BioNLP workshop at the Conference of the North American Association of Computational Linguistics (NAACL 2012). <span class="nt"></p></span>
+
+ <span class="nt"><p></span> Ashwin N. Ananthakrishnan, Tianxi Cai, Su-Chun Cheng, Pei Jun Chen, Guergana Savova, Raul Guzman Perez, Vivian S. Gainer, Shawn N. Murphy, Peter Szolovits, Katherine Liao, Elizabeth W. Karlson, Susanne Churchill, Isaac Kohane, Robert M. Plenge. 2012. Improving Case Definition of Crohn's Disease and Ulcerative Colitis in Electronic Medical Records using Natural Language Processing - A Novel Informatics Approach. Digestive Disease Week (DDW). <span class="nt"></p></span>
+
+ <span class="nt"><p></span> Zheng, Jiaping; Chapman, Wendy; Miller, Timothy; Lin, Chen; Crowley, Rebecca; Savova, Guergana. 2012. A system for coreference resolution for the clinical narrative. Journal of the American Medical Informatics Association. <span class="nt"></p></span>
+
+ <span class="nt"><p></span> Savova, Guergana; Olson, Janet; Murphy, Sean; Cafourek, Victoria; Couch, Fergus; Goetz, Matthew; Ingle, James; Suman, Vera; Chute, Christopher and Weinshilboum, Richard. 2011. The electronic medical record and drug response research: automated discovery of drug treatment patterns for endocrine therapy of breast cancer. Journal of American Medical Informatics Association. <span class="nt"></p></span>
+
+ <span class="nt"><p></span> Sohn, Sunghwan; Kocher, Jean-Pierre; Chute, Christopher; Savova, Guergana. 2011. Drug side effect extraction from clinical narratives of psychiatry and psychology patients. Journal of American Medical Informatics Association. <span class="nt"></p></span>
+
+ <span class="nt"><p></span> Wu, Stephen; Kaggal, Vinod; Savova, Guergana; Liu, Hongfang; Dligach, Dmitriy; Zheng, Jiaping; Chapman, Wendy; Chute, Christopher. 2011. Generality and reuse in a common type system for clinical natural language processing. Managing Interoperability and Complexity in Health Systems (MIXHS 2011), In conjuction with the 20th ACM International conference on information and knowledge management. October 28, 2011. Glasgow, UK. <span class="nt"></p></span>
+
+ <span class="nt"><p></span> Chute, Christopher; Pathak, Jyoti; Savova, Guergana; Bailey Kent; Schor Marshall; Hart, Lacey; Beebe, Calvin and Huff, Stan. 2011. The SHARPn project on secondary use of electronic medical record data: progress, plans an possibilities. AMIA ann symp. <span class="nt"></p></span>
+
+ <span class="nt"><p></span> Cairns, Brian ; Nielsen, Rodney; Masanz, James; Martin, James; Palmer, Martha; Ward, Wayne; Savova, Guergana. 2011. The MiPACQ Clinical Question Answering System. AMIA Annual Symposium. Washington, DC. <span class="nt"></p></span>
+
+ <span class="nt"><p></span> Wilke, Russell; Xu, Hua; Denny, Joshua; Roden, Daniel; Krauss, Ronald M; McCarty, Catherine A; Davis, R; Skaar, Todd; Lamba Jatinder and Savova, Guergana. 2011. The emerging role of electronic medical records in pharamacogenomics. Journal of Clinical Pharmacology and Therapeutics. <span class="nt"></p></span>
+
+ <span class="nt"><p></span> Nielsen, Rodney; Masanz, James; Ogren, Philip; Ward, Wayne; Martin, James; Palmer, Martha; Savova, Guergana. 2010. An architecture for complex clinical question answering. 1st Annual ACM International Conference on Health Informatics (IHI 2010). Washington, DC. <span class="nt"></p></span>
+
+ <span class="nt"><p></span> Kullo, Iftikar; Fan, Jin; Pathak, Jyotishman; Savova, Guergana; Ali, Zeenat; Chute, Christopher. 2010. Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease. JAMIA. DOI:10.1136/jamia.2010.004366. <span class="nt"></p></span>
+
+ <span class="nt"><p></span> Sohn, Sunghwan; Murphy, Sean; Masanz, James; Kocher, Jean-Pierre; Savova, Guergana. 2010. Classification of medication status change in clinical narratives. AMIA Fall symposium. <span class="nt"></p></span>
+
+ <span class="nt"><p></span> Savova, Guergana; Fan, Jin; Ye, Zi; Murphy, Sean; Zheng, Jiaping; Chute, Christopher and Kullo, Iftikhar. 2010. Discovering peripheral arterial disease cases from radiology notes using natural language processing. AMIA Fall symposium. <span class="nt"></p></span>
+
+ <span class="nt"><p></span> Savova, Guergana; Masanz, James; Ogren, Philip; Zheng, Jiaping; Sohn, Sunghwan; Kipper-Schuler, Karin and Chute, Christopher. 2010. Mayo Clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications. JAMIA 2010;17:507-513 doi:10.1136/jamia.2009.001560 <span class="nt"></p></span>
+
+ <span class="nt"><p></span> Cheng, Lionel; Zheng, Jiaping; Savova, Guergana and Erickson, Bradley. 2010. Discerning tumor status from unstructured MRI reports â completeness of information in existing reports and utility of natural language processing. Journal of Digital Imaging of the Society of Imaging Informatics in Medicine, ISSN: 0897-1889: 23(2), 119-133. PMID: 19484309. (Best paper 2010 award of the Journal of Digital Imaging). http://www.ncbi.nlm.nih.gov/pubmed/19484309 <span class="nt"></p></span>
+
+ <span class="nt"><p></span> Sohn, Sunghwan and Savova, Guergana. 2009. Mayo Clinic smoking status classification system. Proc. AMIA, Nov. 2009. <span class="nt"></p></span>
+
+ <span class="nt"><p></span> Garla, V. et al. The Yale cTAKES extensions for document classification: architecture and application. Journal of the American Medical Informatics Association (2011). doi:10.1136/amiajnl-2011-000093 <span class="nt"></p></span>
+
+ <span class="nt"><p></span> Garla, V and Brandt, C. Ontology-Guided Feature Engineering for Clinical Text Classification (2012) http://dx.doi.org/10.1016/j.jbi.2012.04.010. <span class="nt"></p></span>
+</pre></div>
+
+
</div>
+
+<p><div class="row">
+ <div class="col-md-5 col-sm-5 col-padded-top col-center"></p>
+<div class="codehilite"><pre> <span class="nt"><div</span> <span class="na">style=</span><span class="s">"width: 100%; max-width: 272px; display: inline-block; text-align: center;"</span><span class="nt">></span>
+ <span class="nt"><img</span> <span class="na">src=</span><span class="s">"images/pb-ctakes.jpg"</span> <span class="na">style=</span><span class="s">"margin-top: 15px; width: 100%; max-width: 200px;"</span><span class="nt">/></span>
+
+ <span class="nt"><div</span> <span class="na">class=</span><span class="s">"caption"</span> <span class="na">style=</span><span class="s">"min-width: 272px;"</span><span class="nt">></span>Click <span class="nt"><a</span> <span class="na">href=</span><span class="s">"mailto:dev@ctakes.apache.org"</span><span class="nt">></span> here<span class="nt"></a></span> to add
+ your name/organization.
+ <span class="nt"></div></span>
+ <span class="nt"></div></span>
+ <span class="nt"></div></span>
+</pre></div>
+
+
+<p></div>
+</div></p>
<!--- END MAIN CONTENT -->
<footer class="small">