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Posted to commits@ctakes.apache.org by dl...@apache.org on 2014/03/14 20:41:42 UTC
svn commit: r1577674 -
/ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/PreserveUMLSEventEventRelationsInGold.java
Author: dligach
Date: Fri Mar 14 19:41:42 2014
New Revision: 1577674
URL: http://svn.apache.org/r1577674
Log:
code to only preserve event-event relations that map to dictionary lookup-generated events.
Added:
ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/PreserveUMLSEventEventRelationsInGold.java (with props)
Added: ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/PreserveUMLSEventEventRelationsInGold.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/PreserveUMLSEventEventRelationsInGold.java?rev=1577674&view=auto
==============================================================================
--- ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/PreserveUMLSEventEventRelationsInGold.java (added)
+++ ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/PreserveUMLSEventEventRelationsInGold.java Fri Mar 14 19:41:42 2014
@@ -0,0 +1,93 @@
+package org.apache.ctakes.temporal.ae;
+
+import java.util.List;
+
+import org.apache.ctakes.typesystem.type.relation.BinaryTextRelation;
+import org.apache.ctakes.typesystem.type.relation.RelationArgument;
+import org.apache.ctakes.typesystem.type.textsem.EventMention;
+import org.apache.uima.analysis_engine.AnalysisEngineProcessException;
+import org.apache.uima.cas.CASException;
+import org.apache.uima.jcas.JCas;
+import org.uimafit.component.JCasAnnotator_ImplBase;
+import org.uimafit.util.JCasUtil;
+
+import com.google.common.collect.Lists;
+
+/**
+ * Preserve only those event-event relations whose both arguments have covering system event mentions.
+ */
+public class PreserveUMLSEventEventRelationsInGold extends JCasAnnotator_ImplBase {
+
+ public static final String GOLD_VIEW_NAME = "GoldView";
+
+ @Override
+ public void process(JCas jCas) throws AnalysisEngineProcessException {
+
+ JCas goldView;
+ try {
+ goldView = jCas.getView(GOLD_VIEW_NAME);
+ } catch (CASException e) {
+ throw new AnalysisEngineProcessException(e);
+ }
+
+ JCas systemView;
+ try {
+ systemView = jCas.getView("_InitialView");
+ } catch (CASException e) {
+ throw new AnalysisEngineProcessException(e);
+ }
+
+ for(BinaryTextRelation relation : Lists.newArrayList(JCasUtil.select(goldView, BinaryTextRelation.class))) {
+ RelationArgument arg1 = relation.getArg1();
+ RelationArgument arg2 = relation.getArg2();
+
+ String event2Text;
+ String event1Text;
+ if(arg1.getArgument() instanceof EventMention && arg2.getArgument() instanceof EventMention) {
+ event1Text = arg1.getArgument().getCoveredText().toLowerCase();
+ event2Text = arg2.getArgument().getCoveredText().toLowerCase();
+ } else {
+ // this is not an event-event relation
+ continue;
+ }
+
+ List<EventMention> coveringSystemEventMentions1 = JCasUtil.selectCovered(
+ systemView,
+ EventMention.class,
+ arg1.getArgument().getBegin(),
+ arg1.getArgument().getEnd());
+
+ List<EventMention> coveringSystemEventMentions2 = JCasUtil.selectCovered(
+ systemView,
+ EventMention.class,
+ arg2.getArgument().getBegin(),
+ arg2.getArgument().getEnd());
+
+ if(coveringSystemEventMentions1.size() > 0 && coveringSystemEventMentions2.size() > 0) {
+ // keep this relation instance
+ System.out.println("keeping: " + event1Text + "-" + event2Text);
+ continue;
+ }
+
+ System.out.println("removing: " + event1Text + "-" + event2Text);
+ arg1.removeFromIndexes();
+ arg2.removeFromIndexes();
+ relation.removeFromIndexes();
+ }
+
+ for(EventMention mention : Lists.newArrayList(JCasUtil.select(goldView, EventMention.class))) {
+ List<EventMention> coveringSystemEventMentions = JCasUtil.selectCovered(
+ systemView,
+ EventMention.class,
+ mention.getBegin(),
+ mention.getEnd());
+
+ if(coveringSystemEventMentions.size() > 0) {
+ // these are the kind we keep
+ continue;
+ }
+
+ mention.removeFromIndexes();
+ }
+ }
+}
\ No newline at end of file
Propchange: ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/PreserveUMLSEventEventRelationsInGold.java
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