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Posted to dev@airavata.apache.org by Pedro da Silveira <pe...@gmail.com> on 2012/03/21 22:26:50 UTC
Airavata Patch
Hi Group,
I would like to insert a shadow application on Apache Airavata to mock some
execution of the Scientific Application used on thermodynamics calculations
PWscf.
I created a java code where I read 3 files. The first file provides an
input with a few parameters, and the other 2 files provided me with atomic
positions.
I want to know where to insert this on Apache Airavata.
Since I am not familiar with JIRA (always heard about, but never user) I
want be able to insert my commit code into the JIRA issue. Any advice will
be welcome.
Thanks,
Pedro da Silveira
Graduate Student
University of Minnesota
Scientific Computing
Office: 1 (612) 624-2872
Cell phone: 1 (612) 598-8151
Re: Airavata Patch
Posted by Heshan Suriyaarachchi <he...@gmail.com>.
Hi Pedro,
When submitting the patch, add a README file as well. It will help me to
verify your patch. A sample README file can be found in [1].
[1] -
https://svn.apache.org/repos/asf/incubator/airavata/trunk//samples/application-emulators/parameter-app/README
On Wed, Mar 21, 2012 at 6:11 PM, Marlon Pierce <ma...@iu.edu> wrote:
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA1
>
> Hi Pedro--
>
> See
> http://svn.apache.org/viewvc/incubator/airavata/trunk/samples/application-emulators.
> Make your own project within this directory (pwscf-app or something like
> that) and add your code.
>
> Then create the patch with the command "svn diff > airavata-331.patch" and
> attach it to the Jira task. You probably want to just run "svn diff" first
> and inspect the standard output to make sure it looks correct.
>
>
> Marlon
>
>
> On 3/21/12 6:04 PM, Pedro da Silveira wrote:
> > Hi Raminderjeet Singh,
> >
> > Thanks for you suggestion. I created my account a few days ago.
> >
> > The Task on JIRA was created by Marlon.
> > https://issues.apache.org/jira/browse/AIRAVATA-331
> >
> > I created a simple MPI code that prints some information and run on
> Ranger.
> > Where should I place this file on Apache Airavata? gfac-core? gfac-axis2?
> > distribuition?
> >
> > Thanks,
> > *
> > *
> >
> > On Wed, Mar 21, 2012 at 4:53 PM, Raminderjeet Singh <
> > raminderjsingh@gmail.com> wrote:
> >
> >> Sure we are happy to help. To start with you need to create a account on
> >> Apache JIRA and add a new JIRA task. In your case Task Type can be New
> >> Feature or what ever you prefer.
> >>
> >> https://issues.apache.org/jira/browse/AIRAVATA
> >>
> >> Creating patch is actually svn diff of your local code base of airivate
> >> with your changes. Its good to create a patch from root directory. You
> can
> >> create a extensions folder in project home directory or you can add your
> >> code in samples. Its better you create a pom to compile and build the
> code.
> >> After all this you can attach the patch to JIRA task you created by
> going
> >> to More Action > Attach file on JIRA. Just make sure click the radio
> button
> >> "Grant license to ASF for inclusion in ASF works" when you upload the
> patch.
> >> Please let us know if you need more information.
> >> Thanks
> >> Raminder
> >>
> >>
> >> On Mar 21, 2012, at 5:26 PM, Pedro da Silveira wrote:
> >>
> >>> Hi Group,
> >>>
> >>> I would like to insert a shadow application on Apache Airavata to mock
> >> some
> >>> execution of the Scientific Application used on thermodynamics
> >> calculations
> >>> PWscf.
> >>> I created a java code where I read 3 files. The first file provides an
> >>> input with a few parameters, and the other 2 files provided me with
> >> atomic
> >>> positions.
> >>>
> >>> I want to know where to insert this on Apache Airavata.
> >>>
> >>> Since I am not familiar with JIRA (always heard about, but never user)
> I
> >>> want be able to insert my commit code into the JIRA issue. Any advice
> >> will
> >>> be welcome.
> >>>
> >>> Thanks,
> >>> Pedro da Silveira
> >>>
> >>> Graduate Student
> >>> University of Minnesota
> >>> Scientific Computing
> >>> Office: 1 (612) 624-2872
> >>> Cell phone: 1 (612) 598-8151
> >>
> >>
> >
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--
Regards,
Heshan Suriyaarachchi
http://heshans.blogspot.com/
Re: Airavata Patch
Posted by Marlon Pierce <ma...@iu.edu>.
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Hi Pedro--
See http://svn.apache.org/viewvc/incubator/airavata/trunk/samples/application-emulators. Make your own project within this directory (pwscf-app or something like that) and add your code.
Then create the patch with the command "svn diff > airavata-331.patch" and attach it to the Jira task. You probably want to just run "svn diff" first and inspect the standard output to make sure it looks correct.
Marlon
On 3/21/12 6:04 PM, Pedro da Silveira wrote:
> Hi Raminderjeet Singh,
>
> Thanks for you suggestion. I created my account a few days ago.
>
> The Task on JIRA was created by Marlon.
> https://issues.apache.org/jira/browse/AIRAVATA-331
>
> I created a simple MPI code that prints some information and run on Ranger.
> Where should I place this file on Apache Airavata? gfac-core? gfac-axis2?
> distribuition?
>
> Thanks,
> *
> *
>
> On Wed, Mar 21, 2012 at 4:53 PM, Raminderjeet Singh <
> raminderjsingh@gmail.com> wrote:
>
>> Sure we are happy to help. To start with you need to create a account on
>> Apache JIRA and add a new JIRA task. In your case Task Type can be New
>> Feature or what ever you prefer.
>>
>> https://issues.apache.org/jira/browse/AIRAVATA
>>
>> Creating patch is actually svn diff of your local code base of airivate
>> with your changes. Its good to create a patch from root directory. You can
>> create a extensions folder in project home directory or you can add your
>> code in samples. Its better you create a pom to compile and build the code.
>> After all this you can attach the patch to JIRA task you created by going
>> to More Action > Attach file on JIRA. Just make sure click the radio button
>> "Grant license to ASF for inclusion in ASF works" when you upload the patch.
>> Please let us know if you need more information.
>> Thanks
>> Raminder
>>
>>
>> On Mar 21, 2012, at 5:26 PM, Pedro da Silveira wrote:
>>
>>> Hi Group,
>>>
>>> I would like to insert a shadow application on Apache Airavata to mock
>> some
>>> execution of the Scientific Application used on thermodynamics
>> calculations
>>> PWscf.
>>> I created a java code where I read 3 files. The first file provides an
>>> input with a few parameters, and the other 2 files provided me with
>> atomic
>>> positions.
>>>
>>> I want to know where to insert this on Apache Airavata.
>>>
>>> Since I am not familiar with JIRA (always heard about, but never user) I
>>> want be able to insert my commit code into the JIRA issue. Any advice
>> will
>>> be welcome.
>>>
>>> Thanks,
>>> Pedro da Silveira
>>>
>>> Graduate Student
>>> University of Minnesota
>>> Scientific Computing
>>> Office: 1 (612) 624-2872
>>> Cell phone: 1 (612) 598-8151
>>
>>
>
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Re: Airavata Patch
Posted by Pedro da Silveira <pe...@gmail.com>.
Hi Raminderjeet Singh,
Thanks for you suggestion. I created my account a few days ago.
The Task on JIRA was created by Marlon.
https://issues.apache.org/jira/browse/AIRAVATA-331
I created a simple MPI code that prints some information and run on Ranger.
Where should I place this file on Apache Airavata? gfac-core? gfac-axis2?
distribuition?
Thanks,
*
*
On Wed, Mar 21, 2012 at 4:53 PM, Raminderjeet Singh <
raminderjsingh@gmail.com> wrote:
> Sure we are happy to help. To start with you need to create a account on
> Apache JIRA and add a new JIRA task. In your case Task Type can be New
> Feature or what ever you prefer.
>
> https://issues.apache.org/jira/browse/AIRAVATA
>
> Creating patch is actually svn diff of your local code base of airivate
> with your changes. Its good to create a patch from root directory. You can
> create a extensions folder in project home directory or you can add your
> code in samples. Its better you create a pom to compile and build the code.
> After all this you can attach the patch to JIRA task you created by going
> to More Action > Attach file on JIRA. Just make sure click the radio button
> "Grant license to ASF for inclusion in ASF works" when you upload the patch.
> Please let us know if you need more information.
> Thanks
> Raminder
>
>
> On Mar 21, 2012, at 5:26 PM, Pedro da Silveira wrote:
>
> > Hi Group,
> >
> > I would like to insert a shadow application on Apache Airavata to mock
> some
> > execution of the Scientific Application used on thermodynamics
> calculations
> > PWscf.
> > I created a java code where I read 3 files. The first file provides an
> > input with a few parameters, and the other 2 files provided me with
> atomic
> > positions.
> >
> > I want to know where to insert this on Apache Airavata.
> >
> > Since I am not familiar with JIRA (always heard about, but never user) I
> > want be able to insert my commit code into the JIRA issue. Any advice
> will
> > be welcome.
> >
> > Thanks,
> > Pedro da Silveira
> >
> > Graduate Student
> > University of Minnesota
> > Scientific Computing
> > Office: 1 (612) 624-2872
> > Cell phone: 1 (612) 598-8151
>
>
Re: Airavata Patch
Posted by Raminderjeet Singh <ra...@gmail.com>.
Sure we are happy to help. To start with you need to create a account on Apache JIRA and add a new JIRA task. In your case Task Type can be New Feature or what ever you prefer.
https://issues.apache.org/jira/browse/AIRAVATA
Creating patch is actually svn diff of your local code base of airivate with your changes. Its good to create a patch from root directory. You can create a extensions folder in project home directory or you can add your code in samples. Its better you create a pom to compile and build the code.
After all this you can attach the patch to JIRA task you created by going to More Action > Attach file on JIRA. Just make sure click the radio button "Grant license to ASF for inclusion in ASF works" when you upload the patch.
Please let us know if you need more information.
Thanks
Raminder
On Mar 21, 2012, at 5:26 PM, Pedro da Silveira wrote:
> Hi Group,
>
> I would like to insert a shadow application on Apache Airavata to mock some
> execution of the Scientific Application used on thermodynamics calculations
> PWscf.
> I created a java code where I read 3 files. The first file provides an
> input with a few parameters, and the other 2 files provided me with atomic
> positions.
>
> I want to know where to insert this on Apache Airavata.
>
> Since I am not familiar with JIRA (always heard about, but never user) I
> want be able to insert my commit code into the JIRA issue. Any advice will
> be welcome.
>
> Thanks,
> Pedro da Silveira
>
> Graduate Student
> University of Minnesota
> Scientific Computing
> Office: 1 (612) 624-2872
> Cell phone: 1 (612) 598-8151