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Posted to notifications@ctakes.apache.org by "Tomasz Oliwa (JIRA)" <ji...@apache.org> on 2015/07/15 22:58:04 UTC
[jira] [Created] (CTAKES-370) Include smoking status in clinical
pipeline
Tomasz Oliwa created CTAKES-370:
-----------------------------------
Summary: Include smoking status in clinical pipeline
Key: CTAKES-370
URL: https://issues.apache.org/jira/browse/CTAKES-370
Project: cTAKES
Issue Type: Improvement
Components: ctakes-clinical-pipeline, ctakes-smoking-status
Affects Versions: 3.2.2
Environment: Linux
Reporter: Tomasz Oliwa
Priority: Minor
The smoking status detection can be included in the clinical pipeline.
Attached is a AggregatePlaintextFastUMLSProcessor.xml that has the clinical pipeline + the smoking status detection integrated.
Currently cTAKES has smoking status resources that need to have
their imports adjusted for any smoking status detection to work. As a workaround, in:
ProductionPostSentenceAggregate_step1.xml
change:
<import name="org.apache.ctakes.core.analysis_engine.TokenizerAnnotator"/>
<import name="org.apache.ctakes.core.analysis_engine.SentenceDetectorAnnotator"/>
to the absolute or relative path (depends on the installed system, on my machine it is) of these annotators:
<import location="../../../../../../desc/ctakes-core/desc/analysis_engine/TokenizerAnnotator.xml"/>
<import location="../../../../../../desc/ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml"/>
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