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Posted to issues@iceberg.apache.org by "kevinjqliu (via GitHub)" <gi...@apache.org> on 2025/03/31 17:33:40 UTC
[PR] add scan tests with null values [iceberg-python]
kevinjqliu opened a new pull request, #1865:
URL: https://github.com/apache/iceberg-python/pull/1865
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# Rationale for this change
Test scan with null values
Similar to https://github.com/apache/iceberg-rust/pull/1045
# Are these changes tested?
# Are there any user-facing changes?
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Re: [PR] add scan tests with null values [iceberg-python]
Posted by "github-actions[bot] (via GitHub)" <gi...@apache.org>.
github-actions[bot] commented on PR #1865:
URL: https://github.com/apache/iceberg-python/pull/1865#issuecomment-4122326217
This pull request has been closed due to lack of activity. This is not a judgement on the merit of the PR in any way. It is just a way of keeping the PR queue manageable. If you think that is incorrect, or the pull request requires review, you can revive the PR at any time.
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Re: [PR] add scan tests with null values [iceberg-python]
Posted by "kevinjqliu (via GitHub)" <gi...@apache.org>.
kevinjqliu commented on code in PR #1865:
URL: https://github.com/apache/iceberg-python/pull/1865#discussion_r2021466534
##########
tests/io/test_pyarrow.py:
##########
@@ -2317,3 +2321,66 @@ def test_pyarrow_io_multi_fs() -> None:
# Same PyArrowFileIO instance resolves local file input to LocalFileSystem
assert isinstance(pyarrow_file_io.new_input("file:///path/to/file")._filesystem, LocalFileSystem)
+
+
+def test_scan_nulls(catalog: InMemoryCatalog, arrow_table_with_null: pa.Table) -> None:
+ import pyarrow.compute as pc
+
+ catalog.create_namespace("default")
+ table = catalog.create_table(
+ "default.test_scan_nulls",
+ schema=arrow_table_with_null.schema,
+ )
+ table.append(arrow_table_with_null)
+
+ # "string": ["a", None, "z"]
+ assert len(table.scan(row_filter="string is null").to_arrow()) == 1
+ assert len(table.scan(row_filter=IsNull("string")).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string").is_null())) == 1
+
+ assert len(table.scan(row_filter="string is not null").to_arrow()) == 2
+ assert len(table.scan(row_filter=NotNull("string")).to_arrow()) == 2
+ assert len(table.scan().to_arrow().filter(pc.field("string").is_valid())) == 2
+
+ assert len(table.scan(row_filter="string == 'a'").to_arrow()) == 1
+ assert len(table.scan(row_filter=EqualTo(term="string", literal=("a"))).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string") == "a")) == 1
+
+ # this should be 2
+ assert len(table.scan(row_filter="string != 'a'").to_arrow()) == 1
+ assert len(table.scan(row_filter=NotEqualTo(term="string", literal=("a"))).to_arrow()) == 1
+ assert len(table.scan(row_filter=Not(EqualTo(term="string", literal=("a")))).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string") != "a")) == 1
Review Comment:
ugh, this gets really messy. for example, if `string != 'a'` should match null, what about `~(string != 'a')`?
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Re: [PR] add scan tests with null values [iceberg-python]
Posted by "kevinjqliu (via GitHub)" <gi...@apache.org>.
kevinjqliu commented on code in PR #1865:
URL: https://github.com/apache/iceberg-python/pull/1865#discussion_r2021452599
##########
tests/io/test_pyarrow.py:
##########
@@ -2317,3 +2321,66 @@ def test_pyarrow_io_multi_fs() -> None:
# Same PyArrowFileIO instance resolves local file input to LocalFileSystem
assert isinstance(pyarrow_file_io.new_input("file:///path/to/file")._filesystem, LocalFileSystem)
+
+
+def test_scan_nulls(catalog: InMemoryCatalog, arrow_table_with_null: pa.Table) -> None:
+ import pyarrow.compute as pc
+
+ catalog.create_namespace("default")
+ table = catalog.create_table(
+ "default.test_scan_nulls",
+ schema=arrow_table_with_null.schema,
+ )
+ table.append(arrow_table_with_null)
+
+ # "string": ["a", None, "z"]
+ assert len(table.scan(row_filter="string is null").to_arrow()) == 1
+ assert len(table.scan(row_filter=IsNull("string")).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string").is_null())) == 1
+
+ assert len(table.scan(row_filter="string is not null").to_arrow()) == 2
+ assert len(table.scan(row_filter=NotNull("string")).to_arrow()) == 2
+ assert len(table.scan().to_arrow().filter(pc.field("string").is_valid())) == 2
+
+ assert len(table.scan(row_filter="string == 'a'").to_arrow()) == 1
+ assert len(table.scan(row_filter=EqualTo(term="string", literal=("a"))).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string") == "a")) == 1
+
+ # this should be 2
+ assert len(table.scan(row_filter="string != 'a'").to_arrow()) == 1
+ assert len(table.scan(row_filter=NotEqualTo(term="string", literal=("a"))).to_arrow()) == 1
+ assert len(table.scan(row_filter=Not(EqualTo(term="string", literal=("a")))).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string") != "a")) == 1
+
+
+def test_scan_kleene(catalog: InMemoryCatalog, arrow_table_with_null: pa.Table) -> None:
+ catalog.create_namespace("default")
+ table = catalog.create_table(
+ "default.test_scan_nulls",
+ schema=arrow_table_with_null.schema,
+ )
+ table.append(arrow_table_with_null)
+
+ # "string": ["a", None, "z"]
+ assert len(table.scan(row_filter="string is null OR string = 'a'").to_arrow()) == 2 # {null, a}
+ assert len(table.scan(row_filter="string is null AND string = 'a'").to_arrow()) == 0 # {}
+ assert len(table.scan(row_filter="string is not null OR string = 'a'").to_arrow()) == 2 # {a, z}
+ assert len(table.scan(row_filter="string is not null AND string = 'a'").to_arrow()) == 1 # {a}
+
+
+def test_scan_complements(catalog: InMemoryCatalog, arrow_table_with_null: pa.Table) -> None:
+ from pyiceberg.expressions.visitors import bind
+ from pyiceberg.io.pyarrow import _expression_to_complementary_pyarrow
Review Comment:
`_expression_to_complementary_pyarrow` explicitly calls out null handling
https://github.com/apache/iceberg-python/blob/d69a19113ea537d16c34b60ab6e69c4285f933c0/pyiceberg/io/pyarrow.py#L883-L886
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Re: [PR] add scan tests with null values [iceberg-python]
Posted by "Fokko (via GitHub)" <gi...@apache.org>.
Fokko commented on code in PR #1865:
URL: https://github.com/apache/iceberg-python/pull/1865#discussion_r2033309802
##########
tests/io/test_pyarrow.py:
##########
@@ -2317,3 +2321,66 @@ def test_pyarrow_io_multi_fs() -> None:
# Same PyArrowFileIO instance resolves local file input to LocalFileSystem
assert isinstance(pyarrow_file_io.new_input("file:///path/to/file")._filesystem, LocalFileSystem)
+
+
+def test_scan_nulls(catalog: InMemoryCatalog, arrow_table_with_null: pa.Table) -> None:
+ import pyarrow.compute as pc
+
+ catalog.create_namespace("default")
+ table = catalog.create_table(
+ "default.test_scan_nulls",
+ schema=arrow_table_with_null.schema,
+ )
+ table.append(arrow_table_with_null)
+
+ # "string": ["a", None, "z"]
+ assert len(table.scan(row_filter="string is null").to_arrow()) == 1
+ assert len(table.scan(row_filter=IsNull("string")).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string").is_null())) == 1
+
+ assert len(table.scan(row_filter="string is not null").to_arrow()) == 2
+ assert len(table.scan(row_filter=NotNull("string")).to_arrow()) == 2
+ assert len(table.scan().to_arrow().filter(pc.field("string").is_valid())) == 2
+
+ assert len(table.scan(row_filter="string == 'a'").to_arrow()) == 1
+ assert len(table.scan(row_filter=EqualTo(term="string", literal=("a"))).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string") == "a")) == 1
+
+ # this should be 2
+ assert len(table.scan(row_filter="string != 'a'").to_arrow()) == 1
+ assert len(table.scan(row_filter=NotEqualTo(term="string", literal=("a"))).to_arrow()) == 1
+ assert len(table.scan(row_filter=Not(EqualTo(term="string", literal=("a")))).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string") != "a")) == 1
Review Comment:
Another option is to remove the `not`'s in the beginning of the `ScanPlan`.
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Re: [PR] add scan tests with null values [iceberg-python]
Posted by "Fokko (via GitHub)" <gi...@apache.org>.
Fokko commented on code in PR #1865:
URL: https://github.com/apache/iceberg-python/pull/1865#discussion_r2021670570
##########
tests/io/test_pyarrow.py:
##########
@@ -2317,3 +2321,66 @@ def test_pyarrow_io_multi_fs() -> None:
# Same PyArrowFileIO instance resolves local file input to LocalFileSystem
assert isinstance(pyarrow_file_io.new_input("file:///path/to/file")._filesystem, LocalFileSystem)
+
+
+def test_scan_nulls(catalog: InMemoryCatalog, arrow_table_with_null: pa.Table) -> None:
+ import pyarrow.compute as pc
+
+ catalog.create_namespace("default")
+ table = catalog.create_table(
+ "default.test_scan_nulls",
+ schema=arrow_table_with_null.schema,
+ )
+ table.append(arrow_table_with_null)
+
+ # "string": ["a", None, "z"]
+ assert len(table.scan(row_filter="string is null").to_arrow()) == 1
+ assert len(table.scan(row_filter=IsNull("string")).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string").is_null())) == 1
+
+ assert len(table.scan(row_filter="string is not null").to_arrow()) == 2
+ assert len(table.scan(row_filter=NotNull("string")).to_arrow()) == 2
+ assert len(table.scan().to_arrow().filter(pc.field("string").is_valid())) == 2
+
+ assert len(table.scan(row_filter="string == 'a'").to_arrow()) == 1
+ assert len(table.scan(row_filter=EqualTo(term="string", literal=("a"))).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string") == "a")) == 1
+
+ # this should be 2
+ assert len(table.scan(row_filter="string != 'a'").to_arrow()) == 1
+ assert len(table.scan(row_filter=NotEqualTo(term="string", literal=("a"))).to_arrow()) == 1
+ assert len(table.scan(row_filter=Not(EqualTo(term="string", literal=("a")))).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string") != "a")) == 1
Review Comment:
Yes, this looks incorrect to me. `~(string != 'a')` should be rewritten to `string = 'a'`.
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Re: [PR] add scan tests with null values [iceberg-python]
Posted by "Fokko (via GitHub)" <gi...@apache.org>.
Fokko commented on code in PR #1865:
URL: https://github.com/apache/iceberg-python/pull/1865#discussion_r2021670570
##########
tests/io/test_pyarrow.py:
##########
@@ -2317,3 +2321,66 @@ def test_pyarrow_io_multi_fs() -> None:
# Same PyArrowFileIO instance resolves local file input to LocalFileSystem
assert isinstance(pyarrow_file_io.new_input("file:///path/to/file")._filesystem, LocalFileSystem)
+
+
+def test_scan_nulls(catalog: InMemoryCatalog, arrow_table_with_null: pa.Table) -> None:
+ import pyarrow.compute as pc
+
+ catalog.create_namespace("default")
+ table = catalog.create_table(
+ "default.test_scan_nulls",
+ schema=arrow_table_with_null.schema,
+ )
+ table.append(arrow_table_with_null)
+
+ # "string": ["a", None, "z"]
+ assert len(table.scan(row_filter="string is null").to_arrow()) == 1
+ assert len(table.scan(row_filter=IsNull("string")).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string").is_null())) == 1
+
+ assert len(table.scan(row_filter="string is not null").to_arrow()) == 2
+ assert len(table.scan(row_filter=NotNull("string")).to_arrow()) == 2
+ assert len(table.scan().to_arrow().filter(pc.field("string").is_valid())) == 2
+
+ assert len(table.scan(row_filter="string == 'a'").to_arrow()) == 1
+ assert len(table.scan(row_filter=EqualTo(term="string", literal=("a"))).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string") == "a")) == 1
+
+ # this should be 2
+ assert len(table.scan(row_filter="string != 'a'").to_arrow()) == 1
+ assert len(table.scan(row_filter=NotEqualTo(term="string", literal=("a"))).to_arrow()) == 1
+ assert len(table.scan(row_filter=Not(EqualTo(term="string", literal=("a")))).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string") != "a")) == 1
Review Comment:
Yes, this looks incorrect to me. `~(string != 'a')` should be rewritten to `string = 'a'`, this happens in `rewrite_not`.
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Re: [PR] add scan tests with null values [iceberg-python]
Posted by "github-actions[bot] (via GitHub)" <gi...@apache.org>.
github-actions[bot] closed pull request #1865: add scan tests with null values
URL: https://github.com/apache/iceberg-python/pull/1865
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Re: [PR] add scan tests with null values [iceberg-python]
Posted by "kevinjqliu (via GitHub)" <gi...@apache.org>.
kevinjqliu commented on code in PR #1865:
URL: https://github.com/apache/iceberg-python/pull/1865#discussion_r2021453036
##########
tests/io/test_pyarrow.py:
##########
@@ -2317,3 +2321,66 @@ def test_pyarrow_io_multi_fs() -> None:
# Same PyArrowFileIO instance resolves local file input to LocalFileSystem
assert isinstance(pyarrow_file_io.new_input("file:///path/to/file")._filesystem, LocalFileSystem)
+
+
+def test_scan_nulls(catalog: InMemoryCatalog, arrow_table_with_null: pa.Table) -> None:
+ import pyarrow.compute as pc
+
+ catalog.create_namespace("default")
+ table = catalog.create_table(
+ "default.test_scan_nulls",
+ schema=arrow_table_with_null.schema,
+ )
+ table.append(arrow_table_with_null)
+
+ # "string": ["a", None, "z"]
+ assert len(table.scan(row_filter="string is null").to_arrow()) == 1
+ assert len(table.scan(row_filter=IsNull("string")).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string").is_null())) == 1
+
+ assert len(table.scan(row_filter="string is not null").to_arrow()) == 2
+ assert len(table.scan(row_filter=NotNull("string")).to_arrow()) == 2
+ assert len(table.scan().to_arrow().filter(pc.field("string").is_valid())) == 2
+
+ assert len(table.scan(row_filter="string == 'a'").to_arrow()) == 1
+ assert len(table.scan(row_filter=EqualTo(term="string", literal=("a"))).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string") == "a")) == 1
+
+ # this should be 2
+ assert len(table.scan(row_filter="string != 'a'").to_arrow()) == 1
+ assert len(table.scan(row_filter=NotEqualTo(term="string", literal=("a"))).to_arrow()) == 1
+ assert len(table.scan(row_filter=Not(EqualTo(term="string", literal=("a")))).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string") != "a")) == 1
Review Comment:
@Fokko i think this might be a bug in how we handle nulls right now
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Re: [PR] add scan tests with null values [iceberg-python]
Posted by "github-actions[bot] (via GitHub)" <gi...@apache.org>.
github-actions[bot] commented on PR #1865:
URL: https://github.com/apache/iceberg-python/pull/1865#issuecomment-4071511001
This pull request has been marked as stale due to 30 days of inactivity. It will be closed in 1 week if no further activity occurs. If you think that's incorrect or this pull request requires a review, please simply write any comment. If closed, you can revive the PR at any time and @mention a reviewer or discuss it on the dev@iceberg.apache.org list. Thank you for your contributions.
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Re: [PR] add scan tests with null values [iceberg-python]
Posted by "Fokko (via GitHub)" <gi...@apache.org>.
Fokko commented on code in PR #1865:
URL: https://github.com/apache/iceberg-python/pull/1865#discussion_r2024396389
##########
tests/io/test_pyarrow.py:
##########
@@ -2317,3 +2321,66 @@ def test_pyarrow_io_multi_fs() -> None:
# Same PyArrowFileIO instance resolves local file input to LocalFileSystem
assert isinstance(pyarrow_file_io.new_input("file:///path/to/file")._filesystem, LocalFileSystem)
+
+
+def test_scan_nulls(catalog: InMemoryCatalog, arrow_table_with_null: pa.Table) -> None:
+ import pyarrow.compute as pc
+
+ catalog.create_namespace("default")
+ table = catalog.create_table(
+ "default.test_scan_nulls",
+ schema=arrow_table_with_null.schema,
+ )
+ table.append(arrow_table_with_null)
+
+ # "string": ["a", None, "z"]
+ assert len(table.scan(row_filter="string is null").to_arrow()) == 1
+ assert len(table.scan(row_filter=IsNull("string")).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string").is_null())) == 1
+
+ assert len(table.scan(row_filter="string is not null").to_arrow()) == 2
+ assert len(table.scan(row_filter=NotNull("string")).to_arrow()) == 2
+ assert len(table.scan().to_arrow().filter(pc.field("string").is_valid())) == 2
+
+ assert len(table.scan(row_filter="string == 'a'").to_arrow()) == 1
+ assert len(table.scan(row_filter=EqualTo(term="string", literal=("a"))).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string") == "a")) == 1
+
+ # this should be 2
+ assert len(table.scan(row_filter="string != 'a'").to_arrow()) == 1
+ assert len(table.scan(row_filter=NotEqualTo(term="string", literal=("a"))).to_arrow()) == 1
+ assert len(table.scan(row_filter=Not(EqualTo(term="string", literal=("a")))).to_arrow()) == 1
+ assert len(table.scan().to_arrow().filter(pc.field("string") != "a")) == 1
Review Comment:
Another options is:
```python
table.scan().to_arrow().filter(pc.coalesce(pc.field("string") != "a", pc.scalar(False))
```
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Re: [PR] add scan tests with null values [iceberg-python]
Posted by "kurtqq (via GitHub)" <gi...@apache.org>.
kurtqq commented on PR #1865:
URL: https://github.com/apache/iceberg-python/pull/1865#issuecomment-3794817531
what is the status of this PR?
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