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Posted to builds@beam.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2019/09/07 00:06:14 UTC

Build failed in Jenkins: beam_PostCommit_Py_ValCont #4261

See <https://builds.apache.org/job/beam_PostCommit_Py_ValCont/4261/display/redirect>

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[...truncated 118.82 KB...]
  Downloading https://files.pythonhosted.org/packages/2f/a6/30b0a0bef12283e83e58c1d6e7b5aabc7acfc4110df81a4471655d33e704/cachetools-3.1.1-py2.py3-none-any.whl
Building wheels for collected packages: avro, crcmod, dill, future, hdfs, httplib2, oauth2client, pyvcf, pyyaml, googledatastore, proto-google-cloud-datastore-v1, python-snappy, python-gflags, docopt, grpc-google-iam-v1, googleapis-common-protos, absl-py, gast, wrapt, keras-applications, termcolor, h5py
  Building wheel for avro (setup.py): started
  Building wheel for avro (setup.py): finished with status 'done'
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  Building wheel for crcmod (setup.py): started
  Building wheel for crcmod (setup.py): finished with status 'done'
  Created wheel for crcmod: filename=crcmod-1.7-cp27-cp27mu-linux_x86_64.whl size=32321 sha256=a23996e0f43f46d721cac34e8476f02cef9bf0d2b58e1394995ee64dd61fd7ff
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  Building wheel for dill (setup.py): finished with status 'done'
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  Stored in directory: /root/.cache/pip/wheels/5b/d7/0f/e58eae695403de585269f4e4a94e0cd6ca60ec0c202936fa4a
  Building wheel for future (setup.py): started
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  Stored in directory: /root/.cache/pip/wheels/0c/61/d2/d6b7317325828fbb39ee6ad559dbe4664d0896da4721bf379e
  Building wheel for hdfs (setup.py): started
  Building wheel for hdfs (setup.py): finished with status 'done'
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  Stored in directory: /root/.cache/pip/wheels/7e/08/90/26d6cb6d9ba423d6d8da2964f06515c3b863d793422970c946
  Building wheel for httplib2 (setup.py): started
  Building wheel for httplib2 (setup.py): finished with status 'done'
  Created wheel for httplib2: filename=httplib2-0.12.0-cp27-none-any.whl size=95043 sha256=c4b59f7ecfa22f5d184854ff0489eb64f825c9995a066bae01560cfe47097fe9
  Stored in directory: /root/.cache/pip/wheels/6d/41/4b/2b369d6e2b7eaebcdd423516d3fb659c7658c16a2be8fd04ec
  Building wheel for oauth2client (setup.py): started
  Building wheel for oauth2client (setup.py): finished with status 'done'
  Created wheel for oauth2client: filename=oauth2client-3.0.0-cp27-none-any.whl size=106382 sha256=3c91ae76aa233da0f3c289f87adde81727f0a4bdc6a376e1b9bdfd00a3b86ffa
  Stored in directory: /root/.cache/pip/wheels/48/f7/87/b932f09c6335dbcf45d916937105a372ab14f353a9ca431d7d
  Building wheel for pyvcf (setup.py): started
  Building wheel for pyvcf (setup.py): finished with status 'done'
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  Stored in directory: /root/.cache/pip/wheels/81/91/41/3272543c0b9c61da9c525f24ee35bae6fe8f60d4858c66805d
  Building wheel for pyyaml (setup.py): started
  Building wheel for pyyaml (setup.py): finished with status 'done'
  Created wheel for pyyaml: filename=PyYAML-3.13-cp27-cp27mu-linux_x86_64.whl size=356572 sha256=888c6bc57ddc9ab9cbac23aa3d902a77345aed38a9add77617d0d2f328d444b6
  Stored in directory: /root/.cache/pip/wheels/ad/da/0c/74eb680767247273e2cf2723482cb9c924fe70af57c334513f
  Building wheel for googledatastore (setup.py): started
  Building wheel for googledatastore (setup.py): finished with status 'done'
  Created wheel for googledatastore: filename=googledatastore-7.0.2-cp27-none-any.whl size=18156 sha256=a9644d000cd3aef4e8b817d67f709d2ecaeec3d84715e6c30d2f1b73bdca015e
  Stored in directory: /root/.cache/pip/wheels/09/61/a5/7e8f4442b3c3d406ee9eb6c06e1ecbe5625f62f8cb19c08f5b
  Building wheel for proto-google-cloud-datastore-v1 (setup.py): started
  Building wheel for proto-google-cloud-datastore-v1 (setup.py): finished with status 'done'
  Created wheel for proto-google-cloud-datastore-v1: filename=proto_google_cloud_datastore_v1-0.90.4-cp27-none-any.whl size=23753 sha256=a262bf8e20ecd3a7936765bcafb6aac9081d4f30d50442d85c632bd9ab2dca18
  Stored in directory: /root/.cache/pip/wheels/bd/ce/33/8b769968db3761c42c7a91d8a0dbbafc50acfa0750866c8abd
  Building wheel for python-snappy (setup.py): started
  Building wheel for python-snappy (setup.py): finished with status 'done'
  Created wheel for python-snappy: filename=python_snappy-0.5.4-cp27-cp27mu-linux_x86_64.whl size=34281 sha256=61e2b8da39e6f6abced44ce7e351e35d7ca12ee5982539a12bfd69399a0d611d
  Stored in directory: /root/.cache/pip/wheels/df/aa/d5/459b834baa4c9f0ea918a38750fb29981e4a01ef523a936c06
  Building wheel for python-gflags (setup.py): started
  Building wheel for python-gflags (setup.py): finished with status 'done'
  Created wheel for python-gflags: filename=python_gflags-3.0.6-cp27-none-any.whl size=54292 sha256=c0399bd10139feb5d1c58dd4e1fadbd8ec6aca3d771982111e675a0409ec9b3a
  Stored in directory: /root/.cache/pip/wheels/43/7e/90/b5dfc39cdf0376f79174f6923974d599d4afcc0192cb5208e2
  Building wheel for docopt (setup.py): started
  Building wheel for docopt (setup.py): finished with status 'done'
  Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13704 sha256=49795c3bf8388a28b3b8a5a07b282a77f61793c178dfed2eea680166a3ede911
  Stored in directory: /root/.cache/pip/wheels/9b/04/dd/7daf4150b6d9b12949298737de9431a324d4b797ffd63f526e
  Building wheel for grpc-google-iam-v1 (setup.py): started
  Building wheel for grpc-google-iam-v1 (setup.py): finished with status 'done'
  Created wheel for grpc-google-iam-v1: filename=grpc_google_iam_v1-0.11.4-cp27-none-any.whl size=16131 sha256=c34fe789ee18c70517affb0c0d9893b00f7e7941c8b1d0a048b7051c3b9c3ed2
  Stored in directory: /root/.cache/pip/wheels/b6/c6/31/c20321a5a3fde456fc375b7c2814135e6e98bc0d74c40239d9
  Building wheel for googleapis-common-protos (setup.py): started
  Building wheel for googleapis-common-protos (setup.py): finished with status 'done'
  Created wheel for googleapis-common-protos: filename=googleapis_common_protos-1.6.0-cp27-none-any.whl size=77578 sha256=fbddd15a5a52f2ab37cb79a6faf99439fd967cb2dfd6f488d5c43fc789b4c946
  Stored in directory: /root/.cache/pip/wheels/9e/3d/a2/1bec8bb7db80ab3216dbc33092bb7ccd0debfb8ba42b5668d5
  Building wheel for absl-py (setup.py): started
  Building wheel for absl-py (setup.py): finished with status 'done'
  Created wheel for absl-py: filename=absl_py-0.8.0-cp27-none-any.whl size=120987 sha256=432589f86822d690cfcbbc9319194a0136c69f6286c79de5637c258185d1bc3b
  Stored in directory: /root/.cache/pip/wheels/9a/1e/7a/456008eb5e47fd5de792c6139df6d5b3d5f71d51c6a0b94799
  Building wheel for gast (setup.py): started
  Building wheel for gast (setup.py): finished with status 'done'
  Created wheel for gast: filename=gast-0.2.2-cp27-none-any.whl size=7542 sha256=6d50a2ac234be28267025f2864fe4ee351869fbc96ba1753ebfa012662c64215
  Stored in directory: /root/.cache/pip/wheels/5c/2e/7e/a1d4d4fcebe6c381f378ce7743a3ced3699feb89bcfbdadadd
  Building wheel for wrapt (setup.py): started
  Building wheel for wrapt (setup.py): finished with status 'done'
  Created wheel for wrapt: filename=wrapt-1.11.2-cp27-cp27mu-linux_x86_64.whl size=66655 sha256=b32465b676de1d295a7cf51168d8868aad4cffed8edb645d390f28c288349487
  Stored in directory: /root/.cache/pip/wheels/d7/de/2e/efa132238792efb6459a96e85916ef8597fcb3d2ae51590dfd
  Building wheel for keras-applications (setup.py): started
  Building wheel for keras-applications (setup.py): finished with status 'done'
  Created wheel for keras-applications: filename=Keras_Applications-1.0.8-cp27-none-any.whl size=50703 sha256=3aae0dddc46693e92141daf48bdefef9e18714f87bfa7604a3066bb32f225aa0
  Stored in directory: /root/.cache/pip/wheels/dd/f2/5d/2689b5547f32c4e258c3b7ccbe7f1d0f2afbb84fb01e830792
  Building wheel for termcolor (setup.py): started
  Building wheel for termcolor (setup.py): finished with status 'done'
  Created wheel for termcolor: filename=termcolor-1.1.0-cp27-none-any.whl size=4833 sha256=095d37f29cf76c47a018e84bba79d5cbec3de9fba0cf58d64d93c4a3cf58b7d7
  Stored in directory: /root/.cache/pip/wheels/7c/06/54/bc84598ba1daf8f970247f550b175aaaee85f68b4b0c5ab2c6
  Building wheel for h5py (setup.py): started
  Building wheel for h5py (setup.py): finished with status 'error'
  ERROR: Command errored out with exit status 1:
   command: /usr/local/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-4ju_Kp/h5py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-4ju_Kp/h5py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-iWbjge --python-tag cp27
       cwd: /tmp/pip-install-4ju_Kp/h5py/
  Complete output (51 lines):
  Traceback (most recent call last):
    File "<string>", line 1, in <module>
    File "/tmp/pip-install-4ju_Kp/h5py/setup.py", line 159, in <module>
      cmdclass = CMDCLASS,
    File "/usr/local/lib/python2.7/site-packages/setuptools/__init__.py", line 144, in setup
      _install_setup_requires(attrs)
    File "/usr/local/lib/python2.7/site-packages/setuptools/__init__.py", line 139, in _install_setup_requires
      dist.fetch_build_eggs(dist.setup_requires)
    File "/usr/local/lib/python2.7/site-packages/setuptools/dist.py", line 719, in fetch_build_eggs
      replace_conflicting=True,
    File "/usr/local/lib/python2.7/site-packages/pkg_resources/__init__.py", line 782, in resolve
      replace_conflicting=replace_conflicting
    File "/usr/local/lib/python2.7/site-packages/pkg_resources/__init__.py", line 1065, in best_match
      return self.obtain(req, installer)
    File "/usr/local/lib/python2.7/site-packages/pkg_resources/__init__.py", line 1077, in obtain
      return installer(requirement)
    File "/usr/local/lib/python2.7/site-packages/setuptools/dist.py", line 786, in fetch_build_egg
      return cmd.easy_install(req)
    File "/usr/local/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 679, in easy_install
      return self.install_item(spec, dist.location, tmpdir, deps)
    File "/usr/local/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 705, in install_item
      dists = self.install_eggs(spec, download, tmpdir)
    File "/usr/local/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 890, in install_eggs
      return self.build_and_install(setup_script, setup_base)
    File "/usr/local/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 1158, in build_and_install
      self.run_setup(setup_script, setup_base, args)
    File "/usr/local/lib/python2.7/site-packages/setuptools/command/easy_install.py", line 1144, in run_setup
      run_setup(setup_script, args)
    File "/usr/local/lib/python2.7/site-packages/setuptools/sandbox.py", line 253, in run_setup
      raise
    File "/usr/local/lib/python2.7/contextlib.py", line 35, in __exit__
      self.gen.throw(type, value, traceback)
    File "/usr/local/lib/python2.7/site-packages/setuptools/sandbox.py", line 195, in setup_context
      yield
    File "/usr/local/lib/python2.7/contextlib.py", line 35, in __exit__
      self.gen.throw(type, value, traceback)
    File "/usr/local/lib/python2.7/site-packages/setuptools/sandbox.py", line 166, in save_modules
      saved_exc.resume()
    File "/usr/local/lib/python2.7/site-packages/setuptools/sandbox.py", line 141, in resume
      six.reraise(type, exc, self._tb)
    File "/usr/local/lib/python2.7/site-packages/setuptools/sandbox.py", line 154, in save_modules
      yield saved
    File "/usr/local/lib/python2.7/site-packages/setuptools/sandbox.py", line 195, in setup_context
      yield
    File "/usr/local/lib/python2.7/site-packages/setuptools/sandbox.py", line 250, in run_setup
      _execfile(setup_script, ns)
    File "/usr/local/lib/python2.7/site-packages/setuptools/sandbox.py", line 45, in _execfile
      exec(code, globals, locals)
    File "/tmp/easy_install-o_JIjF/numpy-1.17.1/setup.py", line 31, in <module>
  
  RuntimeError: Python version >= 3.5 required.
  ----------------------------------------
  ERROR: Failed building wheel for h5py
  Running setup.py clean for h5py
Successfully built avro crcmod dill future hdfs httplib2 oauth2client pyvcf pyyaml googledatastore proto-google-cloud-datastore-v1 python-snappy python-gflags docopt grpc-google-iam-v1 googleapis-common-protos absl-py gast wrapt keras-applications termcolor
Failed to build h5py
ERROR: google-cloud-bigtable 0.32.1 has requirement google-cloud-core<0.30dev,>=0.29.0, but you'll have google-cloud-core 1.0.2 which is incompatible.
Installing collected packages: avro, fastavro, crcmod, dill, future, futures, six, enum34, grpcio, docopt, chardet, idna, urllib3, certifi, requests, hdfs, httplib2, funcsigs, pbr, mock, pyasn1, pyasn1-modules, rsa, oauth2client, protobuf, numpy, pyarrow, pyparsing, pydot, pytz, pyvcf, pyyaml, typing, nose, monotonic, fasteners, google-apitools, googleapis-common-protos, proto-google-cloud-datastore-v1, googledatastore, cachetools, google-auth, google-api-core, grpc-google-iam-v1, google-cloud-pubsub, google-resumable-media, google-cloud-core, google-cloud-bigquery, google-cloud-bigtable, google-cloud-datastore, cython, python-snappy, scipy, python-dateutil, pandas, protorpc, python-gflags, absl-py, astor, keras-preprocessing, gast, wrapt, google-pasta, markdown, werkzeug, tensorboard, tensorflow-estimator, h5py, keras-applications, backports.weakref, termcolor, tensorflow, pymongo, tenacity, pyhamcrest
  Running setup.py install for h5py: started
    Running setup.py install for h5py: finished with status 'error'
    ERROR: Command errored out with exit status 1:
     command: /usr/local/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-4ju_Kp/h5py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-4ju_Kp/h5py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-q8ghyq/install-record.txt --single-version-externally-managed --compile
         cwd: /tmp/pip-install-4ju_Kp/h5py/
    Complete output (64 lines):
    running install
    running build
    running build_py
    creating build
    creating build/lib.linux-x86_64-2.7
    creating build/lib.linux-x86_64-2.7/h5py
    copying h5py/highlevel.py -> build/lib.linux-x86_64-2.7/h5py
    copying h5py/version.py -> build/lib.linux-x86_64-2.7/h5py
    copying h5py/h5py_warnings.py -> build/lib.linux-x86_64-2.7/h5py
    copying h5py/ipy_completer.py -> build/lib.linux-x86_64-2.7/h5py
    copying h5py/__init__.py -> build/lib.linux-x86_64-2.7/h5py
    creating build/lib.linux-x86_64-2.7/h5py/_hl
    copying h5py/_hl/vds.py -> build/lib.linux-x86_64-2.7/h5py/_hl
    copying h5py/_hl/dims.py -> build/lib.linux-x86_64-2.7/h5py/_hl
    copying h5py/_hl/selections2.py -> build/lib.linux-x86_64-2.7/h5py/_hl
    copying h5py/_hl/datatype.py -> build/lib.linux-x86_64-2.7/h5py/_hl
    copying h5py/_hl/attrs.py -> build/lib.linux-x86_64-2.7/h5py/_hl
    copying h5py/_hl/__init__.py -> build/lib.linux-x86_64-2.7/h5py/_hl
    copying h5py/_hl/dataset.py -> build/lib.linux-x86_64-2.7/h5py/_hl
    copying h5py/_hl/group.py -> build/lib.linux-x86_64-2.7/h5py/_hl
    copying h5py/_hl/compat.py -> build/lib.linux-x86_64-2.7/h5py/_hl
    copying h5py/_hl/base.py -> build/lib.linux-x86_64-2.7/h5py/_hl
    copying h5py/_hl/selections.py -> build/lib.linux-x86_64-2.7/h5py/_hl
    copying h5py/_hl/files.py -> build/lib.linux-x86_64-2.7/h5py/_hl
    copying h5py/_hl/filters.py -> build/lib.linux-x86_64-2.7/h5py/_hl
    creating build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_h5.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_dataset_getitem.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_deprecation.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_dtype.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_filters.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_dataset_swmr.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_selections.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_slicing.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_file2.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_dataset.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_h5d_direct_chunk.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/common.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_h5t.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_h5pl.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_threads.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_objects.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_h5f.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_dims_dimensionproxy.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_file.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_dimension_scales.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_attrs_data.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_h5p.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_group.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/__init__.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_attribute_create.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_attrs.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_datatype.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_base.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_file_image.py -> build/lib.linux-x86_64-2.7/h5py/tests
    copying h5py/tests/test_completions.py -> build/lib.linux-x86_64-2.7/h5py/tests
    creating build/lib.linux-x86_64-2.7/h5py/tests/test_vds
    copying h5py/tests/test_vds/test_virtual_source.py -> build/lib.linux-x86_64-2.7/h5py/tests/test_vds
    copying h5py/tests/test_vds/test_lowlevel_vds.py -> build/lib.linux-x86_64-2.7/h5py/tests/test_vds
    copying h5py/tests/test_vds/test_highlevel_vds.py -> build/lib.linux-x86_64-2.7/h5py/tests/test_vds
    copying h5py/tests/test_vds/__init__.py -> build/lib.linux-x86_64-2.7/h5py/tests/test_vds
    running build_ext
    ('Loading library to get version:', 'libhdf5.so')
    error: libhdf5.so: cannot open shared object file: No such file or directory
    ----------------------------------------
ERROR: Command errored out with exit status 1: /usr/local/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-4ju_Kp/h5py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-4ju_Kp/h5py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-q8ghyq/install-record.txt --single-version-externally-managed --compile Check the logs for full command output.
The command '/bin/sh -c pip install -r /tmp/base_image_requirements.txt &&     python -c "from google.protobuf.internal import api_implementation; assert api_implementation._default_implementation_type == 'cpp'; print ('Verified fast protobuf used.')" &&     rm -rf /root/.cache/pip' returned a non-zero code: 1

> Task :sdks:python:container:py2:docker FAILED
:sdks:python:container:py2:docker (Thread[Execution worker for ':' Thread 2,5,main]) completed. Took 1 mins 21.504 secs.

FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':sdks:python:container:py2:docker'.
> Process 'command 'docker'' finished with non-zero exit value 1

* Try:
Run with --stacktrace option to get the stack trace. Run with --debug option to get more log output. Run with --scan to get full insights.

* Get more help at https://help.gradle.org

Deprecated Gradle features were used in this build, making it incompatible with Gradle 6.0.
Use '--warning-mode all' to show the individual deprecation warnings.
See https://docs.gradle.org/5.2.1/userguide/command_line_interface.html#sec:command_line_warnings

BUILD FAILED in 3m 0s
18 actionable tasks: 17 executed, 1 up-to-date

Publishing build scan...
https://gradle.com/s/inwdeok2szsks

Build step 'Execute shell' marked build as failure

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