Github user barryvdh commented on the pull request:
https://github.com/apache/cordova-ios/pull/211#issuecomment-204806547
I can confirm this issue happening since v4.0.1 at least. v3.9.2 works fine.
All my app links now open in a separate browser window, which isn't supposed to.
Would be nice if this patch could be integrated :)
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