You are viewing a plain text version of this content. The canonical link for it is here.
Posted to commits@airavata.apache.org by sa...@apache.org on 2014/07/22 17:05:32 UTC
[07/50] [abbrv] git commit: Merge branch 'master' of
https://git-wip-us.apache.org/repos/asf/airavata into HEAD
Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata into HEAD
Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/69769b8d
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/69769b8d
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/69769b8d
Branch: refs/heads/workflow-support
Commit: 69769b8df043dc9173261832851a453f19dc457a
Parents: c9af283 a0f5419
Author: Suresh Marru <sm...@apache.org>
Authored: Sat Jul 12 00:07:33 2014 -0400
Committer: Suresh Marru <sm...@apache.org>
Committed: Sat Jul 12 00:07:33 2014 -0400
----------------------------------------------------------------------
.../server/handler/AiravataServerHandler.java | 15 +
.../airavata-php-sdk/pom.xml | 2 +-
.../conf/airavata-client-properties.ini | 1 +
.../resources/conf/app-catalog-identifiers.ini | 8 +
.../php-cli-samples/createExperiment.php | 16 +-
.../php-cli-samples/deleteComputeResource.php | 49 +
.../getAllComputeResourceNames.php | 39 +
.../resources/php-cli-samples/getAppModule.php | 68 -
.../getApplicationDeployment.php | 46 +
.../php-cli-samples/getApplicationModule.php | 68 +
.../php-cli-samples/getComputeResource.php | 46 +
.../php-cli-samples/launchExperiment.php | 2 +-
.../updateApplicationInterface.php | 32 +-
.../client/samples/CreateLaunchExperiment.java | 331 +-
.../tools/RegisterSampleApplications.java | 813 +++++
.../tools/RegisterSampleApplicationsUtils.java | 158 +
.../applicationDeploymentModel.thrift | 2 +-
.../client/tools/DocumentCreatorNew.java | 511 ++-
.../data/impl/ApplicationDeploymentImpl.java | 32 +-
.../data/impl/ApplicationInterfaceImpl.java | 47 +-
.../catalog/data/impl/ComputeResourceImpl.java | 15 +-
.../catalog/data/util/AppCatalogJPAUtils.java | 368 ++-
.../app/catalog/test/AppDeploymentTest.java | 147 -
.../app/catalog/test/AppInterfaceTest.java | 173 -
.../app/catalog/test/ComputeResourceTest.java | 278 --
.../app/catalog/test/GatewayProfileTest.java | 127 -
.../app/catalog/test/util/Initialize.java | 321 --
.../server/src/main/resources/PBSTemplate.xslt | 14 +-
.../src/main/resources/SLURMTemplate.xslt | 5 +
.../main/resources/airavata-server.properties | 4 +-
.../server/src/main/resources/gfac-config.xml | 2 +-
.../airavata/gfac/server/GfacServerHandler.java | 6 +-
.../airavata/gfac/core/cpi/BetterGfacImpl.java | 232 +-
.../apache/airavata/gfac/core/cpi/GFacImpl.java | 4 +-
.../AiravataExperimentStatusUpdator.java | 2 +-
.../AiravataWorkflowNodeStatusUpdator.java | 2 +-
.../airavata/gfac/core/utils/GFacUtils.java | 1917 ++++++-----
.../gfac/gsissh/util/GFACGSISSHUtils.java | 2 +-
.../monitor/impl/pull/qstat/HPCPullMonitor.java | 11 +
.../gfac/ssh/handler/SSHOutputHandler.java | 20 +
.../airavata/gfac/ssh/util/GFACSSHUtils.java | 1 +
.../airavata/integration/SimpleEchoIT.java | 8 +-
.../SingleAppIntegrationTestBase.java | 2 +-
.../cpi/impl/AbstractOrchestrator.java | 12 +-
.../orchestrator/core/BaseOrchestratorTest.java | 8 +-
.../registry/jpa/impl/ExperimentRegistry.java | 70 +-
.../registry/jpa/impl/RegistryImpl.java | 44 +-
.../registry/jpa/resources/Utils.java | 17 +-
.../registry/jpa/resources/WorkerResource.java | 18 +-
.../resources/WorkflowNodeDetailResource.java | 3 +-
.../jpa/utils/ThriftDataModelConversion.java | 24 +-
modules/xbaya-gui/pom.xml | 20 +-
.../apache/airavata/xbaya/ThriftClientData.java | 70 +
.../airavata/xbaya/ThriftServiceType.java | 27 +
.../java/org/apache/airavata/xbaya/XBaya.java | 42 -
.../airavata/xbaya/XBayaConfiguration.java | 140 +-
.../org/apache/airavata/xbaya/XBayaEngine.java | 99 +-
.../registry/ComponentRegistryLoader.java | 15 +-
.../xbaya/core/generators/ScuflFiler.java | 89 +-
.../xbaya/interpretor/DoWhileHandler.java | 9 +-
.../xbaya/interpretor/ExperimentTemplate.java | 74 +-
.../GUIWorkflowInterpreterInteractorImpl.java | 418 +--
.../SSWorkflowInterpreterInteractorImpl.java | 232 +-
.../interpretor/WorkflowExecutionTemplate.java | 102 +-
.../xbaya/interpretor/WorkflowInterpreter.java | 3008 +++++++++---------
.../WorkflowInterpreterConfiguration.java | 464 +--
.../WorkflowInterpreterInteractor.java | 180 +-
.../WorkflowInterpretorEventListener.java | 772 ++---
...WorkflowInterpretorMessageReceiverInOut.java | 524 +--
.../WorkflowInterpretorSkeleton.java | 1135 ++++---
.../xbaya/invoker/EmbeddedGFacInvoker.java | 1364 ++++----
.../xbaya/jython/script/JythonScript.java | 1 -
.../xbaya/lead/LeadContextHeaderHelper.java | 1 -
.../registrybrowser/AiravataConfigurations.java | 54 -
.../ApplicationDeploymentDescriptionWrap.java | 98 -
.../ApplicationDeploymentDescriptions.java | 107 -
.../registrybrowser/EventingServiceURL.java | 54 -
.../registrybrowser/EventingServiceURLs.java | 54 -
.../xbaya/model/registrybrowser/GFacURL.java | 54 -
.../xbaya/model/registrybrowser/GFacURLs.java | 56 -
.../model/registrybrowser/HostDescriptions.java | 50 -
.../model/registrybrowser/InputParameters.java | 36 -
.../registrybrowser/InterpreterServiceURL.java | 54 -
.../registrybrowser/InterpreterServiceURLs.java | 56 -
.../model/registrybrowser/MessageBoxURL.java | 54 -
.../model/registrybrowser/MessageBoxURLs.java | 54 -
.../model/registrybrowser/NodeParameter.java | 60 -
.../model/registrybrowser/OutputParameters.java | 36 -
.../registrybrowser/ServiceDescriptions.java | 50 -
.../registrybrowser/ServiceParameters.java | 57 -
.../model/registrybrowser/XBayaWorkflow.java | 94 -
.../XBayaWorkflowExperiment.java | 81 -
.../XBayaWorkflowExperiments.java | 65 -
.../XBayaWorkflowNodeElement.java | 107 -
.../registrybrowser/XBayaWorkflowTemplate.java | 50 -
.../registrybrowser/XBayaWorkflowTemplates.java | 63 -
.../xbaya/provenance/ProvenanceReader.java | 64 -
.../xbaya/provenance/ProvenanceWrite.java | 217 --
.../provenance/WorkflowNodeStatusUpdater.java | 135 -
.../xbaya/provenance/WorkflowStatusUpdater.java | 103 -
.../xbaya/registry/RegistryAccesser.java | 212 --
.../nodes/AbstractAiravataTreeNode.java | 255 --
.../nodes/AiravataConfigurationsNode.java | 94 -
.../nodes/AiravataTreeNodeFactory.java | 112 -
.../ApplicationDeploymentDescriptionNode.java | 131 -
.../ApplicationDeploymentDescriptionsNode.java | 139 -
.../nodes/EventingServiceURLNode.java | 98 -
.../nodes/EventingServiceURLsNode.java | 91 -
.../registrybrowser/nodes/GFacURLNode.java | 98 -
.../registrybrowser/nodes/GFacURLsNode.java | 91 -
.../nodes/HostDescriptionNode.java | 127 -
.../nodes/HostDescriptionsNode.java | 131 -
.../nodes/InputParametersNode.java | 46 -
.../nodes/InterpreterServiceURLNode.java | 98 -
.../nodes/InterpreterServiceURLsNode.java | 90 -
.../registrybrowser/nodes/JCRBrowserIcons.java | 50 -
.../nodes/MessageBoxURLNode.java | 98 -
.../nodes/MessageBoxURLsNode.java | 90 -
.../nodes/OutputParametersNode.java | 46 -
.../registrybrowser/nodes/ParameterNode.java | 136 -
.../nodes/ParameterValueNode.java | 90 -
.../registrybrowser/nodes/ParametersNode.java | 90 -
.../registrybrowser/nodes/RegistryNode.java | 130 -
.../nodes/RegistryTreeCellRenderer.java | 43 -
.../nodes/ServiceDescriptionNode.java | 142 -
.../nodes/ServiceDescriptionsNode.java | 137 -
.../nodes/XBayaWorkflowExperimentNode.java | 141 -
.../nodes/XBayaWorkflowExperimentsNode.java | 89 -
.../nodes/XBayaWorkflowNode.java | 107 -
.../nodes/XBayaWorkflowNodeElementNode.java | 101 -
.../nodes/XBayaWorkflowTemplateNode.java | 130 -
.../nodes/XBayaWorkflowTemplatesNode.java | 99 -
.../xbaya/scufl/script/ScuflScript.java | 1078 +++----
.../airavata/xbaya/test/BPELScriptTestCase.java | 209 --
.../airavata/xbaya/test/BrowserTestCase.java | 38 -
.../apache/airavata/xbaya/test/DSCTestCase.java | 131 -
.../airavata/xbaya/test/DSCUtilTestCase.java | 79 -
.../xbaya/test/GFacServiceCreaterTestCase.java | 120 -
.../airavata/xbaya/test/GraphTestCase.java | 54 -
.../airavata/xbaya/test/MetadataTestCase.java | 221 --
.../airavata/xbaya/test/MonitorTestCase.java | 67 -
.../xbaya/test/ResourceNotifierTestCase.java | 59 -
.../airavata/xbaya/test/StringUtilTestCase.java | 55 -
.../airavata/xbaya/test/WSDLTestCase.java | 92 -
.../airavata/xbaya/test/WSDLUtilTestCase.java | 51 -
.../airavata/xbaya/test/WSIFTestCase.java | 53 -
.../airavata/xbaya/test/WaitDialogTestCase.java | 282 --
.../WebComponentRegistryClientTestCase.java | 173 -
.../test/WorkflowModificationTestCase.java | 373 ---
.../airavata/xbaya/test/WorkflowTestCase.java | 120 -
.../xbaya/test/XBayaSecurityTestCase.java | 68 -
.../airavata/xbaya/test/XBayaTestCase.java | 77 -
.../apache/airavata/xbaya/test/XppTestCase.java | 71 -
.../test/jython/JythonClassLoaderTestCase.java | 44 -
.../xbaya/test/jython/JythonLibraryTest.java | 115 -
.../jython/JythonOneTimeRunnerTestCase.java | 70 -
.../xbaya/test/jython/JythonRunnerTestCase.java | 74 -
.../xbaya/test/jython/JythonScriptTestCase.java | 131 -
.../xbaya/test/service/AllServices.java | 115 -
.../airavata/xbaya/test/service/Service.java | 44 -
.../test/service/ServiceNotificationSender.java | 161 -
.../xbaya/test/service/adder/Adder.java | 54 -
.../xbaya/test/service/adder/AdderClient.java | 114 -
.../xbaya/test/service/adder/AdderImpl.java | 79 -
.../xbaya/test/service/adder/AdderService.java | 131 -
.../xbaya/test/service/approver/Approver.java | 54 -
.../test/service/approver/ApproverClient.java | 113 -
.../test/service/approver/ApproverImpl.java | 74 -
.../test/service/approver/ApproverService.java | 131 -
.../test/service/arrayadder/ArrayAdder.java | 54 -
.../service/arrayadder/ArrayAdderClient.java | 121 -
.../test/service/arrayadder/ArrayAdderImpl.java | 83 -
.../service/arrayadder/ArrayAdderService.java | 131 -
.../test/service/arraygen/ArrayGenerator.java | 54 -
.../service/arraygen/ArrayGeneratorClient.java | 113 -
.../service/arraygen/ArrayGeneratorImpl.java | 77 -
.../service/arraygen/ArrayGeneratorService.java | 131 -
.../airavata/xbaya/test/service/echo/Echo.java | 54 -
.../xbaya/test/service/echo/EchoClient.java | 116 -
.../xbaya/test/service/echo/EchoImpl.java | 73 -
.../xbaya/test/service/echo/EchoService.java | 113 -
.../test/service/multiplier/Multiplier.java | 54 -
.../test/service/multiplier/MultiplierImpl.java | 80 -
.../service/multiplier/MultiplierService.java | 132 -
.../xbaya/test/util/WorkflowCreator.java | 1482 ++++-----
.../org/apache/airavata/xbaya/ui/XBayaGUI.java | 72 +-
...licationDescriptionAdvancedOptionDialog.java | 358 ---
.../ApplicationDescriptionDialog.java | 822 -----
...tionDescriptionHostAdvancedOptionDialog.java | 459 ---
.../DeploymentDescriptionDialog.java | 816 -----
.../descriptors/DescriptorEditorDialog.java | 424 ---
.../descriptors/DescriptorListDialog.java | 261 --
.../descriptors/HostDeploymentDialog.java | 617 ----
.../descriptors/HostDescriptionDialog.java | 592 ----
.../descriptors/ServiceDescriptionDialog.java | 727 -----
.../dynamic/DynamicWorkflowRunnerWindow.java | 774 ++---
.../xbaya/ui/dialogs/graph/ws/WSNodeWindow.java | 12 +-
.../ui/dialogs/registry/RegistryWindow.java | 268 +-
.../registry/browser/JCRBrowserDialog.java | 3 +-
.../xbaya/ui/experiment/ExperimentMenu.java | 45 +-
.../ui/experiment/RegistryLoaderWindow.java | 239 --
.../WorkflowInterpreterLaunchWindow.java | 69 +-
.../airavata/xbaya/ui/menues/EditMenuItem.java | 91 +-
.../airavata/xbaya/ui/menues/RunMenuItem.java | 56 +-
.../airavata/xbaya/ui/menues/ViewMenuItem.java | 22 +-
.../airavata/xbaya/ui/menues/XBayaMenuItem.java | 177 +-
.../xbaya/ui/views/JCRBrowserPanel.java | 574 ++--
.../airavata/xbaya/util/InterpreterUtil.java | 42 +-
.../apache/airavata/xbaya/util/XBayaUtil.java | 154 +-
.../interpreter/ComplexForEachWorkflowTest.java | 146 +-
.../interpreter/ComplexMathWorkflowTest.java | 142 +-
.../interpreter/CrossProductWorkflowTest.java | 142 +-
.../xbaya/interpreter/ForEachWorkflowTest.java | 146 +-
.../xbaya/interpreter/RegistryServiceTest.java | 210 +-
.../interpreter/SimpleForEachWorkflowTest.java | 144 +-
.../interpreter/SimpleMathWorkflowTest.java | 146 +-
.../xbaya/interpreter/WorkflowTest.java | 148 +-
.../xbaya/interpreter/WorkflowTrackingTest.java | 210 +-
.../interpreter/XBayaConsolidatedTestSuite.java | 134 +-
.../xbaya/interpreter/utils/TestUtilServer.java | 486 +--
.../interpreter/utils/WorkflowTestUtils.java | 194 +-
.../airavata/gsi/ssh/api/job/JobDescriptor.java | 8 +
.../gsi/ssh/impl/StandardOutReader.java | 6 +
.../src/main/resources/SLURMTemplate.xslt | 5 +
.../main/resources/schemas/PBSJobDescriptor.xsd | 1 +
225 files changed, 11432 insertions(+), 26777 deletions(-)
----------------------------------------------------------------------