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Posted to issues@bigtop.apache.org by "Masatake Iwasaki (Jira)" <ji...@apache.org> on 2024/04/17 06:18:00 UTC
[jira] [Commented] (BIGTOP-4093) Avoid oepkgs for installing R on openEuler
[ https://issues.apache.org/jira/browse/BIGTOP-4093?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17837978#comment-17837978 ]
Masatake Iwasaki commented on BIGTOP-4093:
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R provided by oepkgs conflicts with openblas of 22.03-lts-sp3 since /usr/lib64/R/lib/libRblas.so is contained in both.
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Error: Execution of '/usr/bin/dnf install -d 0 -e 1 -y R' returned 1: Error: Transaction test error:
file /usr/lib64/R/lib/libRblas.so conflicts between attempted installs of R-core-4.1.3-1.x86_64 and openblas-0.3.18-5.oe2203sp3.x86_64
Error: /Stage[main]/Bigtop_toolchain::Renv/Package[R]/ensure: change from 'purged' to 'present' failed: Execution of '/usr/bin/dnf install -d 0 -e 1 -y R' returned 1: Error: Transaction test error:
file /usr/lib64/R/lib/libRblas.so conflicts between attempted installs of R-core-4.1.3-1.x86_64 and openblas-0.3.18-5.oe2203sp3.x86_64
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Error: Execution of '/usr/bin/dnf install -d 0 -e 1 -y R-devel' returned 1: Error: Transaction test error:
file /usr/lib64/R/lib/libRblas.so conflicts between attempted installs of R-core-4.1.3-1.x86_64 and openblas-0.3.18-5.oe2203sp3.x86_64
Error: /Stage[main]/Bigtop_toolchain::Renv/Package[R-devel]/ensure: change from 'purged' to 'present' failed: Execution of '/usr/bin/dnf install -d 0 -e 1 -y R-devel' returned 1: Error: Transaction test error:
file /usr/lib64/R/lib/libRblas.so conflicts between attempted installs of R-core-4.1.3-1.x86_64 and openblas-0.3.18-5.oe2203sp3.x86_64
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Since the openblas is indirect dependency of R-devel, it can not be excluded.
FYI, you can see the relation between R-devel and openblas by repoquery.
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$ repoquery --whatrequires openblas --tree | less
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> Avoid oepkgs for installing R on openEuler
> ------------------------------------------
>
> Key: BIGTOP-4093
> URL: https://issues.apache.org/jira/browse/BIGTOP-4093
> Project: Bigtop
> Issue Type: Improvement
> Components: toolchain
> Reporter: Masatake Iwasaki
> Assignee: Masatake Iwasaki
> Priority: Major
>
> We should avoid oepkgs [if it does not support the latest 22.03 (i.e. 22.03-LTS-SP3)|https://search.oepkgs.net/en-US]. Installing R from source code could be the quick fix as done before BIGTOP-3967.
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