You are viewing a plain text version of this content. The canonical link for it is here.
Posted to commits@airavata.apache.org by sa...@apache.org on 2014/04/14 20:30:53 UTC

[51/90] [abbrv] [partial] git commit: AIRAVATA-1124

AIRAVATA-1124


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/0e2c10f5
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/0e2c10f5
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/0e2c10f5

Branch: refs/heads/master
Commit: 0e2c10f568f583d886657ad0b536ae62f7fa04ad
Parents: 5940988
Author: Saminda Wijeratne <sa...@gmail.com>
Authored: Sun Apr 13 18:01:11 2014 -0700
Committer: Saminda Wijeratne <sa...@gmail.com>
Committed: Sun Apr 13 18:01:11 2014 -0700

----------------------------------------------------------------------
 modules/commons/json/pom.xml                    |   44 -
 .../apache/airavata/json/StaxonJSONBuilder.java |   63 -
 .../airavata/json/StaxonJSONFormatter.java      |  106 -
 modules/commons/pom.xml                         |    1 -
 modules/distribution/pom.xml                    |    1 -
 modules/distribution/xbaya-gui/pom.xml          |  558 ---
 .../src/main/assembly/bin-assembly.xml          |  165 -
 .../airavata/distribution/xbaya/jnlp/Main.java  |  156 -
 .../xbaya-gui/src/main/resources/INSTALL        |   44 -
 .../xbaya-gui/src/main/resources/LICENSE        | 2273 -----------
 .../xbaya-gui/src/main/resources/NOTICE         |  163 -
 .../xbaya-gui/src/main/resources/README         |  101 -
 .../src/main/resources/airavata-logo.gif        |  Bin 13895 -> 0 bytes
 .../xbaya-gui/src/main/resources/bin/setenv.bat |   42 -
 .../xbaya-gui/src/main/resources/bin/setenv.sh  |   77 -
 .../src/main/resources/bin/xbaya-gui.bat        |   23 -
 .../src/main/resources/bin/xbaya-gui.sh         |   22 -
 .../xbaya-gui/src/main/resources/jnlp/INSTALL   |   48 -
 .../xbaya-gui/src/main/resources/jnlp/LICENSE   | 2272 ----------
 .../xbaya-gui/src/main/resources/jnlp/NOTICE    |  163 -
 .../xbaya-gui/src/main/resources/jnlp/README    |   91 -
 .../src/main/resources/jnlp/xbaya.jnlp          |   42 -
 .../xbaya-gui/src/main/resources/xbaya.jks      |  Bin 2234 -> 0 bytes
 .../xbaya-gui/src/main/resources/xbaya.jnlp     |   42 -
 .../registry/airavata-registry-service/pom.xml  |  116 -
 .../services/ConfigurationRegistryService.java  |   77 -
 .../services/DescriptorRegistryService.java     |  105 -
 .../services/ProjectsRegistryService.java       |   66 -
 .../services/ProvenanceRegistryService.java     |  311 --
 .../PublishedWorkflowRegistryService.java       |   51 -
 .../registry/services/RegistryService.java      |  164 -
 .../services/UserWorkflowRegistryService.java   |   47 -
 .../registry/services/utils/ConnectionPool.java |  381 --
 .../services/utils/DatabaseCreator.java         |  348 --
 .../registry/services/utils/JdbcStorage.java    |  180 -
 .../src/main/resources/services.xml             |   22 -
 modules/registry/airavata-registry-test/pom.xml |  112 -
 .../api/test/AiravataRegistryAPITest.java       | 1800 --------
 .../registry/api/test/util/Initialize.java      |  296 --
 .../src/test/resources/registry-derby.sql       |  380 --
 modules/registry/pom.xml                        |    2 -
 modules/rest/client/pom.xml                     |   82 -
 .../java/org/apache/airavata/rest/Test.java     |  542 ---
 .../client/BasicRegistryResourceClient.java     |  429 --
 .../client/ConfigurationResourceClient.java     | 1141 ------
 .../client/CredentialStoreResourceClient.java   |  226 -
 .../rest/client/DescriptorResourceClient.java   | 1278 ------
 .../rest/client/ExperimentResourceClient.java   |  498 ---
 .../rest/client/PasswordCallbackImpl.java       |   40 -
 .../rest/client/ProjectResourceClient.java      |  391 --
 .../rest/client/ProvenanceResourceClient.java   | 2854 -------------
 .../client/PublishedWorkflowResourceClient.java |  410 --
 .../airavata/rest/client/RegistryClient.java    | 1111 -----
 .../rest/client/UserWorkflowResourceClient.java |  376 --
 .../rest/utils/BasicAuthHeaderUtil.java         |   79 -
 .../airavata/rest/utils/ClientConstant.java     |   30 -
 .../airavata/rest/utils/CookieManager.java      |   37 -
 modules/rest/mappings/pom.xml                   |   72 -
 .../resourcemappings/ApplicationDescriptor.java |  264 --
 .../ApplicationDescriptorList.java              |   40 -
 .../ApplicationStatusDataList.java              |   40 -
 .../resourcemappings/ConfigurationList.java     |   37 -
 .../resourcemappings/DescriptorNameList.java    |   42 -
 .../resourcemappings/ExecutionErrorsList.java   |   41 -
 .../resourcemappings/ExperimentDataList.java    |   45 -
 .../resourcemappings/ExperimentErrorsList.java  |   41 -
 .../resourcemappings/ExperimentIDList.java      |   42 -
 .../resourcemappings/ExperimentList.java        |   41 -
 .../resourcemappings/GFacErrorsList.java        |   41 -
 .../mappings/resourcemappings/GFacJobList.java  |   40 -
 .../resourcemappings/HostDescriptionList.java   |   41 -
 .../resourcemappings/HostDescriptor.java        |  109 -
 .../resourcemappings/NodeErrorsList.java        |   40 -
 .../PublishWorkflowNamesList.java               |   40 -
 .../ServiceDescriptionList.java                 |   36 -
 .../resourcemappings/ServiceDescriptor.java     |   68 -
 .../resourcemappings/ServiceParameters.java     |   63 -
 .../rest/mappings/resourcemappings/URLList.java |   38 -
 .../mappings/resourcemappings/UserList.java     |   45 -
 .../mappings/resourcemappings/Workflow.java     |   49 -
 .../resourcemappings/WorkflowErrorsList.java    |   41 -
 .../resourcemappings/WorkflowInstancesList.java |   38 -
 .../mappings/resourcemappings/WorkflowList.java |   42 -
 .../WorkflowNodeIODataList.java                 |   40 -
 .../resourcemappings/WorkspaceProjectList.java  |   42 -
 .../utils/ApplicationDescriptorTypes.java       |   29 -
 .../rest/mappings/utils/DescriptorUtil.java     |  483 ---
 .../airavata/rest/mappings/utils/HostTypes.java |   32 -
 .../rest/mappings/utils/RegIdentifier.java      |   40 -
 .../rest/mappings/utils/RegPoolUtils.java       |  100 -
 .../mappings/utils/RegistryInstancesPool.java   |   50 -
 .../rest/mappings/utils/RegistryListener.java   |   54 -
 .../mappings/utils/ResourcePathConstants.java   |  249 --
 .../mappings/utils/RestServicesConstants.java   |   30 -
 modules/rest/pom.xml                            |   44 -
 modules/rest/service/pom.xml                    |   99 -
 .../experiment/ExperimentDataService.java       |   32 -
 .../experiment/ExperimentExecutionService.java  |  115 -
 .../gateway/ApplicationDataService.java         |   32 -
 .../gateway/PublishedWorkflowDataService.java   |   31 -
 .../services/gateway/WorkflowDataService.java   |   31 -
 .../rest/resources/BasicRegistryResouce.java    |  199 -
 .../ConfigurationRegistryResource.java          |  732 ----
 .../resources/CredentialRegistryResource.java   |  152 -
 .../resources/DescriptorRegistryResource.java   |  889 ----
 .../resources/ExperimentRegistryResource.java   |  364 --
 .../rest/resources/ProjectRegistryResource.java |  271 --
 .../resources/ProvenanceRegistryResource.java   | 1949 ---------
 .../PublishWorkflowRegistryResource.java        |  289 --
 .../rest/resources/UserRegistryResource.java    |   81 -
 .../resources/UserWorkflowRegistryResource.java |  291 --
 .../rest/security/HttpAuthenticatorFilter.java  |  191 -
 .../rest/security/ServletRequestHelper.java     |  118 -
 .../basic/BasicAccessAuthenticator.java         |  220 -
 .../rest/security/local/LocalUserStore.java     |  339 --
 .../security/session/SessionAuthenticator.java  |  120 -
 .../registry/rest/utils/WebAppUtil.java         |   64 -
 .../server/ServerConfigurationService.java      |   32 -
 .../security/AbstractAuthenticatorTest.java     |   84 -
 .../rest/security/MyHttpServletRequest.java     |  373 --
 .../basic/BasicAccessAuthenticatorTest.java     |  116 -
 .../rest/security/local/LocalUserStoreTest.java |  113 -
 .../session/SessionAuthenticatorTest.java       |   84 -
 .../src/test/resources/authenticators.xml       |   55 -
 modules/rest/webapp/README.txt                  |  164 -
 modules/rest/webapp/pom.xml                     |  257 --
 .../src/main/resources/authenticators.xml       |   89 -
 .../resources/credential-store/airavata.jks     |  Bin 501 -> 0 bytes
 .../main/resources/credential-store/client.xml  |   38 -
 .../credential-store/oauth-privkey.pk8          |   28 -
 .../resources/credential-store/oauth-pubkey.pem |    9 -
 .../rest/webapp/src/main/resources/log4j.xml    |   49 -
 .../rest/webapp/src/main/webapp/WEB-INF/web.xml |  200 -
 .../rest/webapp/src/main/webapp/acs/index.jsp   |   44 -
 .../src/main/webapp/credential-store/error.jsp  |   53 -
 .../credential-store/password-credentials.jsp   |   33 -
 .../webapp/credential-store/show-redirect.jsp   |   44 -
 .../main/webapp/credential-store/success.jsp    |   25 -
 .../src/main/webapp/images/airavata-logo-2.png  |  Bin 4314 -> 0 bytes
 modules/rest/webapp/src/main/webapp/index.jsp   |   26 -
 .../webapp/src/main/webapp/user-store/add.jsp   |  142 -
 .../webapp/src/main/webapp/user-store/index.jsp |  138 -
 .../src/main/webapp/user-store/password.jsp     |  157 -
 modules/security/pom.xml                        |   55 -
 .../security/AbstractAuthenticator.java         |  150 -
 .../security/AbstractDatabaseAuthenticator.java |  129 -
 .../security/AuthenticationException.java       |   41 -
 .../apache/airavata/security/Authenticator.java |  108 -
 .../apache/airavata/security/Authoriser.java    |   43 -
 .../org/apache/airavata/security/UserStore.java |   71 -
 .../airavata/security/UserStoreException.java   |   46 -
 .../AbstractConfigurationReader.java            |   55 -
 .../AuthenticatorConfigurationReader.java       |  244 --
 .../userstore/AbstractJDBCUserStore.java        |  134 -
 .../security/userstore/JDBCUserStore.java       |  166 -
 .../security/userstore/LDAPUserStore.java       |  147 -
 .../security/userstore/SessionDBUserStore.java  |  132 -
 .../security/util/PasswordDigester.java         |  111 -
 .../AuthenticatorConfigurationReaderTest.java   |  119 -
 .../configurations/TestDBAuthenticator1.java    |   57 -
 .../configurations/TestDBAuthenticator2.java    |   58 -
 .../configurations/TestDBAuthenticator3.java    |   57 -
 .../security/configurations/TestUserStore.java  |   47 -
 .../security/userstore/JDBCUserStoreTest.java   |  106 -
 .../security/userstore/LDAPUserStoreTest.java   |   69 -
 .../userstore/SessionDBUserStoreTest.java       |  101 -
 .../src/test/resources/authenticators.xml       |   88 -
 .../test/resources/disabled-authenticator.xml   |   84 -
 .../src/test/resources/jdbc-authenticator.xml   |   39 -
 .../src/test/resources/ldap-authenticator.xml   |   41 -
 .../test/resources/session-authenticator.xml    |   45 -
 modules/workflow-interpreter/pom.xml            |   96 -
 .../src/main/resources/WorkflowInterpretor.wsdl |   92 -
 .../src/main/resources/services.xml             |   27 -
 modules/workflow-model/pom.xml                  |    3 -
 .../workflow-model-component-node/pom.xml       |   77 -
 .../workflow-model-component/pom.xml            |   83 -
 .../registry/JCRComponentReference.java         |   65 -
 .../registry/JCRComponentRegistry.java          |  162 -
 modules/ws-messenger/distribution/pom.xml       |  139 -
 .../src/main/assembly/bin-assembly.xml          |  190 -
 .../distribution/src/main/resources/axis2.xml   |  551 ---
 .../src/main/resources/bin/axis2.bat            |   75 -
 .../src/main/resources/bin/axis2.sh             |   56 -
 .../src/main/resources/bin/axis2server.bat      |  118 -
 .../src/main/resources/bin/axis2server.sh       |   66 -
 .../src/main/resources/bin/java2wsdl.bat        |   79 -
 .../src/main/resources/bin/java2wsdl.sh         |   21 -
 .../src/main/resources/bin/setenv.sh            |  112 -
 .../src/main/resources/bin/wsdl2java.bat        |   78 -
 .../src/main/resources/bin/wsdl2java.sh         |   21 -
 .../distribution/src/main/resources/startGUI.sh |   44 -
 .../ws-messenger/messagebox/maven-eclipse.xml   |   16 -
 modules/ws-messenger/messagebox/pom.xml         |  100 -
 .../wsmg/msgbox/MsgBoxServiceLifeCycle.java     |  192 -
 .../MsgBoxServiceMessageReceiverInOut.java      |  138 -
 .../wsmg/msgbox/MsgBoxServiceSkeleton.java      |  186 -
 .../wsmg/msgbox/Storage/MsgBoxStorage.java      |   59 -
 .../Storage/dbpool/DatabaseStorageImpl.java     |  125 -
 .../msgbox/Storage/dbpool/MessageBoxDB.java     |  265 --
 .../msgbox/Storage/memory/InMemoryImpl.java     |  133 -
 .../wsmg/msgbox/StoreMessageHandler.java        |  123 -
 .../airavata/wsmg/msgbox/util/ConfigKeys.java   |   36 -
 .../wsmg/msgbox/util/MsgBoxCommonConstants.java |   26 -
 .../wsmg/msgbox/util/MsgBoxOperations.java      |   53 -
 .../airavata/wsmg/msgbox/util/MsgBoxUtils.java  |   71 -
 .../resources/database_scripts/msgBox-derby.sql |   41 -
 .../resources/database_scripts/msgBox-mysql.sql |   42 -
 .../messagebox/src/main/resources/services.xml  |   57 -
 .../wsmg/msgbox/InMemoryMessageBoxServer.java   |  157 -
 .../wsmg/msgbox/MessageBoxStressTest.java       |  129 -
 .../apache/airavata/wsmg/msgbox/MsgBoxTest.java |  103 -
 modules/ws-messenger/messagebroker/pom.xml      |  117 -
 .../wsmg/broker/AbstractBrokerMsgReceiver.java  |  105 -
 .../wsmg/broker/AdditionalMessageContent.java   |  131 -
 .../wsmg/broker/BrokerServiceLifeCycle.java     |  328 --
 .../airavata/wsmg/broker/ConsumerInfo.java      |  123 -
 .../airavata/wsmg/broker/ConsumerList.java      |   73 -
 .../wsmg/broker/ConsumerListManager.java        |   79 -
 .../wsmg/broker/NotificationProcessor.java      |  313 --
 .../broker/amqp/AMQPNotificationProcessor.java  |  132 -
 .../broker/context/ContextParameterInfo.java    |   58 -
 .../wsmg/broker/context/ContextParameters.java  |   72 -
 .../wsmg/broker/context/ProcessingContext.java  |  114 -
 .../context/ProcessingContextBuilder.java       |   30 -
 .../broker/handler/PublishedMessageHandler.java |  120 -
 .../wsmg/broker/subscription/CleanupThread.java |  148 -
 .../broker/subscription/SubscriptionEntry.java  |   49 -
 .../subscription/SubscriptionManager.java       |  440 --
 .../broker/subscription/SubscriptionState.java  |  301 --
 .../wseventing/WSEProcessingContextBuilder.java |  186 -
 .../broker/wseventing/WSEProtocolSupport.java   |  204 -
 .../wseventing/WSEventingMsgReceiver.java       |   77 -
 .../WSEventingPublishMsgReceiver.java           |   74 -
 .../wsnotification/WSNTProtocolSupport.java     |  237 --
 .../WSNotificationMsgReceiver.java              |  110 -
 .../WSNotificationProcessingContextBuilder.java |  179 -
 .../airavata/wsmg/commons/OutGoingMessage.java  |  125 -
 .../commons/storage/WsmgInMemoryStorage.java    |  106 -
 .../commons/storage/WsmgPersistantStorage.java  |  773 ----
 .../wsmg/commons/storage/WsmgQueue.java         |   34 -
 .../wsmg/commons/storage/WsmgStorage.java       |   39 -
 .../wsmg/commons/util/OMElementComparator.java  |  177 -
 .../airavata/wsmg/config/WSMGParameter.java     |   48 -
 .../wsmg/config/WsmgConfigurationContext.java   |  118 -
 .../wsmg/matching/AbstractMessageMatcher.java   |   89 -
 .../wsmg/matching/XPath/YFilterInfo.java        |  156 -
 .../matching/XPath/YFilterMessageMatcher.java   |  183 -
 .../simpleTopic/DirectWsntMessageMatcher.java   |  125 -
 .../wsmg/messenger/ConsumerUrlManager.java      |  195 -
 .../airavata/wsmg/messenger/Deliverable.java    |   32 -
 .../wsmg/messenger/DeliveryProcessor.java       |   90 -
 .../airavata/wsmg/messenger/OutGoingQueue.java  |   65 -
 .../airavata/wsmg/messenger/SenderUtils.java    |  161 -
 .../messenger/protocol/DeliveryProtocol.java    |   34 -
 .../messenger/protocol/SendingException.java    |   37 -
 .../messenger/protocol/impl/Axis2Protocol.java  |  156 -
 .../messenger/strategy/SendingStrategy.java     |   33 -
 .../strategy/impl/ConsumerHandler.java          |   71 -
 .../strategy/impl/FixedParallelSender.java      |  185 -
 .../messenger/strategy/impl/LightweightMsg.java |   54 -
 .../messenger/strategy/impl/ParallelSender.java |  155 -
 .../messenger/strategy/impl/SerialSender.java   |   75 -
 .../apache/airavata/wsmg/util/BrokerUtil.java   |  121 -
 .../org/apache/airavata/wsmg/util/Counter.java  |   77 -
 .../airavata/wsmg/util/RunTimeStatistics.java   |  157 -
 .../apache/airavata/wsmg/util/TimerThread.java  |   87 -
 .../wsmg/util/WsEventingOperations.java         |   55 -
 .../wsmg/util/WsNotificationOperations.java     |   56 -
 .../database_scripts/cleanDBScript.sql          |   27 -
 .../database_scripts/msgBroker-derby.sql        |   60 -
 .../database_scripts/msgBroker-mysql.sql        |   61 -
 .../src/main/resources/services.xml             |  125 -
 .../airavata/wsmg/broker/BrokerWSETest.java     |  107 -
 .../airavata/wsmg/broker/BrokerWSNTTest.java    |  108 -
 .../wsmg/commons/TestCommonRoutines.java        |   57 -
 .../TestAddtionalWseXpathAndTopicScenarios.java |  151 -
 .../XPath/TestWseXpathAndTopicSubscription.java |  137 -
 .../XPath/TestWseXpathSubscription.java         |  139 -
 .../matching/XPath/performance/XppXPath.java    |  269 --
 .../rtt/NotificationManager.java                |  151 -
 .../rtt/PerformanceTest.java                    |  399 --
 .../rtt/PublisherThread.java                    |   99 -
 .../rtt/StatCalculatorThread.java               |  103 -
 .../rtt/StatContainer.java                      |   49 -
 .../performance_evaluator/rtt/Subscription.java |  107 -
 .../rtt/util/ConfigKeys.java                    |   43 -
 .../rtt/util/LoadMsgPayload.java                |   66 -
 .../rtt/util/LoadXpath.java                     |   66 -
 .../airavata/wsmg/util/BrokerUtilTest.java      |  167 -
 .../apache/airavata/wsmg/util/ConfigKeys.java   |   34 -
 .../airavata/wsmg/util/TestUtilServer.java      |  225 -
 .../src/test/resources/unit_tests.properties    |   24 -
 modules/ws-messenger/pom.xml                    |    3 -
 .../README.txt                                  |   28 -
 .../build.properties                            |   24 -
 .../build.xml                                   |   78 -
 .../conf/configuration.properties               |   23 -
 .../wsmg/samples/msgBox/SimpleMsgBoxExec.java   |   93 -
 .../airavata/wsmg/samples/util/ConfigKeys.java  |   31 -
 .../README.txt                                  |   28 -
 .../build.properties                            |   23 -
 .../build.xml                                   |   87 -
 .../conf/configurations.properties              |   29 -
 .../airavata/wsmg/samples/util/ConfigKeys.java  |   38 -
 .../airavata/wsmg/samples/wse/MsgUtil.java      |   71 -
 .../wse/MultipleProducersConsumersTopics.java   |  126 -
 .../airavata/wsmg/samples/wse/Producer.java     |   94 -
 .../README.txt                                  |   25 -
 .../build.properties                            |   23 -
 .../build.xml                                   |   87 -
 .../conf/configurations.properties              |   29 -
 .../airavata/wsmg/samples/util/ConfigKeys.java  |   38 -
 .../airavata/wsmg/samples/wse/Consumer.java     |  154 -
 .../airavata/wsmg/samples/wse/MsgUtil.java      |   71 -
 .../wse/MultipleProducersConsumersTopics.java   |  163 -
 .../airavata/wsmg/samples/wse/Producer.java     |   94 -
 .../README.txt                                  |   25 -
 .../build.properties                            |   23 -
 .../build.xml                                   |   87 -
 .../conf/configurations.properties              |   28 -
 .../airavata/wsmg/samples/util/ConfigKeys.java  |   39 -
 .../airavata/wsmg/samples/wse/Consumer.java     |  147 -
 .../samples/wse/MultipleProducersConsumers.java |   90 -
 .../airavata/wsmg/samples/wse/Producer.java     |  108 -
 .../wse-multiple-producers-consumers/README.txt |   25 -
 .../build.properties                            |   21 -
 .../wse-multiple-producers-consumers/build.xml  |   87 -
 .../conf/configurations.properties              |   28 -
 .../airavata/wsmg/samples/util/ConfigKeys.java  |   39 -
 .../airavata/wsmg/samples/wse/Consumer.java     |  146 -
 .../samples/wse/MultipleProducersConsumers.java |   93 -
 .../airavata/wsmg/samples/wse/Producer.java     |  108 -
 .../messagebroker/wse-round-trip/README.txt     |   26 -
 .../wse-round-trip/build.properties             |   23 -
 .../messagebroker/wse-round-trip/build.xml      |   88 -
 .../conf/configurations.properties              |   27 -
 .../airavata/wsmg/samples/util/ConfigKeys.java  |   38 -
 .../airavata/wsmg/samples/wse/Consumer.java     |  143 -
 .../airavata/wsmg/samples/wse/Producer.java     |   87 -
 .../airavata/wsmg/samples/wse/WSERoundTrip.java |   70 -
 .../wse-topic-subscription/README.txt           |   25 -
 .../wse-topic-subscription/build.properties     |   23 -
 .../wse-topic-subscription/build.xml            |   87 -
 .../conf/configurations.properties              |   28 -
 .../airavata/wsmg/samples/util/ConfigKeys.java  |   37 -
 .../wsmg/samples/wse/TopicSubscribe.java        |   66 -
 .../wse-xpath-subscription/README.txt           |   24 -
 .../wse-xpath-subscription/build.properties     |   23 -
 .../wse-xpath-subscription/build.xml            |   87 -
 .../conf/configurations.properties              |   28 -
 .../airavata/wsmg/samples/util/ConfigKeys.java  |   37 -
 .../wsmg/samples/wse/XpathSubscribe.java        |   67 -
 .../samples/messagebroker/wsmg-gui/README.txt   |   22 -
 .../messagebroker/wsmg-gui/build.properties     |   23 -
 .../samples/messagebroker/wsmg-gui/build.xml    |   51 -
 modules/xbaya-gui/pom.xml                       |  322 --
 .../java/org/apache/airavata/xbaya/XBaya.java   |  315 --
 .../airavata/xbaya/XBayaConfiguration.java      |  974 -----
 .../apache/airavata/xbaya/XBayaConstants.java   |  205 -
 .../org/apache/airavata/xbaya/XBayaEngine.java  |  302 --
 .../org/apache/airavata/xbaya/XBayaVersion.java |   42 -
 .../component/registry/ComponentController.java |   50 -
 .../registry/ComponentRegistryLoader.java       |  195 -
 .../xbaya/concurrent/PredicatedExecutable.java  |   33 -
 .../xbaya/concurrent/PredicatedTaskRunner.java  |  153 -
 .../xbaya/core/amazon/AmazonCredential.java     |   79 -
 .../xbaya/core/amazon/EC2InstanceResult.java    |   94 -
 .../xbaya/core/generators/BPELFiler.java        |  145 -
 .../xbaya/core/generators/ImageFiler.java       |  106 -
 .../xbaya/core/generators/JythonFiler.java      |  128 -
 .../xbaya/core/generators/ODEScriptFiler.java   |  165 -
 .../xbaya/core/generators/ScuflFiler.java       |  127 -
 .../xbaya/core/generators/WorkflowFiler.java    |  267 --
 .../xbaya/core/generators/XmlBeansFiler.java    |   71 -
 .../core/ide/XBayaExecutionModeListener.java    |   34 -
 .../xbaya/core/workflow/ParameterListModel.java |   88 -
 .../xbaya/datadriven/WorkflowHarvester.java     |  191 -
 .../airavata/xbaya/file/XBayaPathConstants.java |   64 -
 .../airavata/xbaya/gfac/GFacRegistryClient.java |  169 -
 .../airavata/xbaya/gfac/SimpleWSClient.java     |  134 -
 .../xbaya/globus/FileTransferConstants.java     |   38 -
 .../xbaya/globus/GridFTPFileTransferClient.java |  238 --
 .../xbaya/graph/controller/NodeController.java  |  199 -
 .../xbaya/interpretor/DoWhileHandler.java       |  251 --
 .../xbaya/interpretor/ExperimentTemplate.java   |   37 -
 .../GUIWorkflowInterpreterInteractorImpl.java   |  211 -
 .../xbaya/interpretor/HeaderConstants.java      |   33 -
 .../SSWorkflowInterpreterInteractorImpl.java    |  118 -
 .../StandaloneNotificationSender.java           |  135 -
 .../interpretor/SystemComponentInvoker.java     |  114 -
 .../WorkFlowInterpreterException.java           |   37 -
 .../interpretor/WorkflowExecutionMessage.java   |   40 -
 .../interpretor/WorkflowExecutionTemplate.java  |   51 -
 .../xbaya/interpretor/WorkflowInterpreter.java  | 1508 -------
 .../WorkflowInterpreterConfiguration.java       |  233 --
 .../WorkflowInterpreterInteractor.java          |   94 -
 .../interpretor/WorkflowInterpreterInvoker.java |   66 -
 .../WorkflowInterpretorEventListener.java       |  387 --
 ...WorkflowInterpretorMessageReceiverInOut.java |  262 --
 .../WorkflowInterpretorSkeleton.java            |  572 ---
 .../xbaya/invoker/AsynchronousInvoker.java      |  118 -
 .../airavata/xbaya/invoker/DynamicInvoker.java  |  167 -
 .../xbaya/invoker/DynamicServiceCreator.java    |   86 -
 .../xbaya/invoker/EmbeddedGFacInvoker.java      |  686 ----
 .../airavata/xbaya/invoker/GFacInvoker.java     |  199 -
 .../airavata/xbaya/invoker/GenericInvoker.java  |  529 ---
 .../apache/airavata/xbaya/invoker/Invoker.java  |  105 -
 .../invoker/MsgBoxWsaResponsesCorrelator.java   |  140 -
 .../airavata/xbaya/invoker/SimpleInvoker.java   |  260 --
 .../xbaya/invoker/WorkflowInputUtil.java        |   84 -
 .../WorkflowInvokerWrapperForGFacInvoker.java   |  233 --
 .../xbaya/invoker/factory/InvokerFactory.java   |   90 -
 .../xbaya/jython/lib/GFacServiceCreator.java    |  168 -
 .../xbaya/jython/lib/NotificationSender.java    |  289 --
 .../xbaya/jython/lib/ServiceNotifiable.java     |   82 -
 .../jython/lib/ServiceNotificationSender.java   |  293 --
 .../StandaloneServiceNotificationSender.java    |   95 -
 .../xbaya/jython/lib/WorkflowNotifiable.java    |   92 -
 .../xbaya/jython/runner/JythonClassLoader.java  |  423 --
 .../jython/runner/JythonOneTimeRunner.java      |   35 -
 .../jython/runner/JythonOneTimeRunnerImpl.java  |   85 -
 .../xbaya/jython/runner/JythonRunner.java       |   73 -
 .../xbaya/jython/script/JythonScript.java       |  671 ---
 .../apache/airavata/xbaya/lead/LEADTypes.java   |  225 -
 .../xbaya/lead/LeadContextHeaderHelper.java     |  155 -
 .../xbaya/lead/NotificationHandler.java         |  190 -
 .../xbaya/menues/tools/ToolsMenuItem.java       |  100 -
 .../registrybrowser/AiravataConfigurations.java |   54 -
 .../ApplicationDeploymentDescriptionWrap.java   |   98 -
 .../ApplicationDeploymentDescriptions.java      |  107 -
 .../registrybrowser/EventingServiceURL.java     |   54 -
 .../registrybrowser/EventingServiceURLs.java    |   54 -
 .../xbaya/model/registrybrowser/GFacURL.java    |   54 -
 .../xbaya/model/registrybrowser/GFacURLs.java   |   56 -
 .../model/registrybrowser/HostDescriptions.java |   50 -
 .../model/registrybrowser/InputParameters.java  |   36 -
 .../registrybrowser/InterpreterServiceURL.java  |   54 -
 .../registrybrowser/InterpreterServiceURLs.java |   56 -
 .../model/registrybrowser/MessageBoxURL.java    |   54 -
 .../model/registrybrowser/MessageBoxURLs.java   |   54 -
 .../model/registrybrowser/NodeParameter.java    |   60 -
 .../model/registrybrowser/OutputParameters.java |   36 -
 .../registrybrowser/ServiceDescriptions.java    |   50 -
 .../registrybrowser/ServiceParameters.java      |   57 -
 .../model/registrybrowser/XBayaWorkflow.java    |   94 -
 .../XBayaWorkflowExperiment.java                |   81 -
 .../XBayaWorkflowExperiments.java               |   65 -
 .../XBayaWorkflowNodeElement.java               |  107 -
 .../registrybrowser/XBayaWorkflowTemplate.java  |   50 -
 .../registrybrowser/XBayaWorkflowTemplates.java |   63 -
 .../xbaya/modifier/WorkflowModifier.java        |  260 --
 .../xbaya/provenance/ProvenanceReader.java      |   64 -
 .../xbaya/provenance/ProvenanceWrite.java       |  217 -
 .../provenance/WorkflowNodeStatusUpdater.java   |  135 -
 .../xbaya/provenance/WorkflowStatusUpdater.java |  103 -
 .../xbaya/registry/PasswordCallbackImpl.java    |   39 -
 .../xbaya/registry/RegistryAccesser.java        |  212 -
 .../nodes/AbstractAiravataTreeNode.java         |  255 --
 .../nodes/AiravataConfigurationsNode.java       |   94 -
 .../nodes/AiravataTreeNodeFactory.java          |  112 -
 .../ApplicationDeploymentDescriptionNode.java   |  131 -
 .../ApplicationDeploymentDescriptionsNode.java  |  139 -
 .../nodes/EventingServiceURLNode.java           |   98 -
 .../nodes/EventingServiceURLsNode.java          |   91 -
 .../registrybrowser/nodes/GFacURLNode.java      |   98 -
 .../registrybrowser/nodes/GFacURLsNode.java     |   91 -
 .../nodes/HostDescriptionNode.java              |  127 -
 .../nodes/HostDescriptionsNode.java             |  131 -
 .../nodes/InputParametersNode.java              |   46 -
 .../nodes/InterpreterServiceURLNode.java        |   98 -
 .../nodes/InterpreterServiceURLsNode.java       |   90 -
 .../registrybrowser/nodes/JCRBrowserIcons.java  |   50 -
 .../nodes/MessageBoxURLNode.java                |   98 -
 .../nodes/MessageBoxURLsNode.java               |   90 -
 .../nodes/OutputParametersNode.java             |   46 -
 .../registrybrowser/nodes/ParameterNode.java    |  136 -
 .../nodes/ParameterValueNode.java               |   90 -
 .../registrybrowser/nodes/ParametersNode.java   |   90 -
 .../registrybrowser/nodes/RegistryNode.java     |  130 -
 .../nodes/RegistryTreeCellRenderer.java         |   43 -
 .../nodes/ServiceDescriptionNode.java           |  142 -
 .../nodes/ServiceDescriptionsNode.java          |  137 -
 .../nodes/XBayaWorkflowExperimentNode.java      |  141 -
 .../nodes/XBayaWorkflowExperimentsNode.java     |   89 -
 .../nodes/XBayaWorkflowNode.java                |  107 -
 .../nodes/XBayaWorkflowNodeElementNode.java     |  101 -
 .../nodes/XBayaWorkflowTemplateNode.java        |  130 -
 .../nodes/XBayaWorkflowTemplatesNode.java       |   99 -
 .../xbaya/scufl/script/ScuflScript.java         |  539 ---
 .../airavata/xbaya/test/BPELScriptTestCase.java |  209 -
 .../airavata/xbaya/test/BrowserTestCase.java    |   38 -
 .../apache/airavata/xbaya/test/DSCTestCase.java |  131 -
 .../airavata/xbaya/test/DSCUtilTestCase.java    |   79 -
 .../xbaya/test/GFacServiceCreaterTestCase.java  |  120 -
 .../airavata/xbaya/test/GraphTestCase.java      |   54 -
 .../airavata/xbaya/test/MetadataTestCase.java   |  221 -
 .../airavata/xbaya/test/MonitorTestCase.java    |   67 -
 .../xbaya/test/ResourceNotifierTestCase.java    |   59 -
 .../airavata/xbaya/test/StringUtilTestCase.java |   55 -
 .../airavata/xbaya/test/WSDLTestCase.java       |   92 -
 .../airavata/xbaya/test/WSDLUtilTestCase.java   |   51 -
 .../airavata/xbaya/test/WSIFTestCase.java       |   53 -
 .../airavata/xbaya/test/WaitDialogTestCase.java |  282 --
 .../WebComponentRegistryClientTestCase.java     |  173 -
 .../test/WorkflowModificationTestCase.java      |  373 --
 .../airavata/xbaya/test/WorkflowTestCase.java   |  120 -
 .../xbaya/test/XBayaSecurityTestCase.java       |   68 -
 .../airavata/xbaya/test/XBayaTestCase.java      |   77 -
 .../apache/airavata/xbaya/test/XppTestCase.java |   71 -
 .../test/jython/JythonClassLoaderTestCase.java  |   44 -
 .../xbaya/test/jython/JythonLibraryTest.java    |  115 -
 .../jython/JythonOneTimeRunnerTestCase.java     |   70 -
 .../xbaya/test/jython/JythonRunnerTestCase.java |   74 -
 .../xbaya/test/jython/JythonScriptTestCase.java |  131 -
 .../xbaya/test/service/AllServices.java         |  115 -
 .../airavata/xbaya/test/service/Service.java    |   44 -
 .../test/service/ServiceNotificationSender.java |  161 -
 .../xbaya/test/service/adder/Adder.java         |   54 -
 .../xbaya/test/service/adder/AdderClient.java   |  114 -
 .../xbaya/test/service/adder/AdderImpl.java     |   79 -
 .../xbaya/test/service/adder/AdderService.java  |  131 -
 .../xbaya/test/service/approver/Approver.java   |   54 -
 .../test/service/approver/ApproverClient.java   |  113 -
 .../test/service/approver/ApproverImpl.java     |   74 -
 .../test/service/approver/ApproverService.java  |  131 -
 .../test/service/arrayadder/ArrayAdder.java     |   54 -
 .../service/arrayadder/ArrayAdderClient.java    |  121 -
 .../test/service/arrayadder/ArrayAdderImpl.java |   83 -
 .../service/arrayadder/ArrayAdderService.java   |  131 -
 .../test/service/arraygen/ArrayGenerator.java   |   54 -
 .../service/arraygen/ArrayGeneratorClient.java  |  113 -
 .../service/arraygen/ArrayGeneratorImpl.java    |   77 -
 .../service/arraygen/ArrayGeneratorService.java |  131 -
 .../airavata/xbaya/test/service/echo/Echo.java  |   54 -
 .../xbaya/test/service/echo/EchoClient.java     |  116 -
 .../xbaya/test/service/echo/EchoImpl.java       |   73 -
 .../xbaya/test/service/echo/EchoService.java    |  113 -
 .../test/service/multiplier/Multiplier.java     |   54 -
 .../test/service/multiplier/MultiplierImpl.java |   80 -
 .../service/multiplier/MultiplierService.java   |  132 -
 .../xbaya/test/util/WorkflowCreator.java        |  741 ----
 .../org/apache/airavata/xbaya/ui/XBayaGUI.java  |  850 ----
 .../ui/actions/AbstractBrowserActionItem.java   |   90 -
 .../ui/actions/registry/browser/AddAction.java  |   43 -
 .../actions/registry/browser/BrowserAction.java |   39 -
 .../ui/actions/registry/browser/CopyAction.java |   39 -
 .../actions/registry/browser/DeleteAction.java  |   42 -
 .../ui/actions/registry/browser/EditAction.java |   39 -
 .../actions/registry/browser/ImportAction.java  |   39 -
 .../actions/registry/browser/RefreshAction.java |   43 -
 .../ui/actions/registry/browser/ViewAction.java |   39 -
 .../airavata/xbaya/ui/dialogs/AboutWindow.java  |  126 -
 .../airavata/xbaya/ui/dialogs/ErrorWindow.java  |  279 --
 .../ui/dialogs/GlobusFileTransferWindow.java    |  258 --
 .../airavata/xbaya/ui/dialogs/TextWindow.java   |  139 -
 .../airavata/xbaya/ui/dialogs/WaitDialog.java   |  140 -
 .../airavata/xbaya/ui/dialogs/XBayaDialog.java  |  267 --
 .../dialogs/amazon/AmazonEC2InvokerWindow.java  |  222 -
 .../ui/dialogs/amazon/AmazonS3UtilsWindow.java  |  312 --
 .../xbaya/ui/dialogs/amazon/BucketsLoader.java  |  123 -
 .../dialogs/amazon/ChangeCredentialWindow.java  |  204 -
 .../amazon/EC2InstancesManagementWindow.java    |  183 -
 .../ui/dialogs/amazon/EC2LaunchWindow.java      |  181 -
 .../ui/dialogs/amazon/InstancesLoader.java      |  105 -
 .../xbaya/ui/dialogs/amazon/S3Downloader.java   |  137 -
 .../xbaya/ui/dialogs/amazon/S3Uploader.java     |  127 -
 .../ui/dialogs/component/URLRegistryWindow.java |  132 -
 .../ui/dialogs/component/WebResigtryWindow.java |  131 -
 ...licationDescriptionAdvancedOptionDialog.java |  358 --
 .../ApplicationDescriptionDialog.java           |  822 ----
 ...tionDescriptionHostAdvancedOptionDialog.java |  459 ---
 .../DeploymentDescriptionDialog.java            |  816 ----
 .../descriptors/DescriptorEditorDialog.java     |  424 --
 .../descriptors/DescriptorListDialog.java       |  261 --
 .../descriptors/HostDeploymentDialog.java       |  617 ---
 .../descriptors/HostDescriptionDialog.java      |  592 ---
 .../descriptors/ServiceDescriptionDialog.java   |  727 ----
 .../amazon/InstanceConfigurationDialog.java     |  224 -
 .../graph/dynamic/DynamicNodeWindow.java        |  472 ---
 .../dynamic/DynamicWorkflowRunnerWindow.java    |  394 --
 .../system/ConstantConfigurationDialog.java     |  213 -
 .../DifferedInputConfigurationDialog.java       |  263 --
 .../graph/system/DoWhileConfigrationDialog.java |  189 -
 .../system/EndBlockConfigurationDialog.java     |  163 -
 .../system/EndDoWhileConfigurationDialog.java   |  172 -
 .../system/EndForEachConfigurationDialog.java   |  161 -
 .../graph/system/EndifConfigurationDialog.java  |  163 -
 .../system/ForEachConfigurationDialog.java      |  161 -
 .../graph/system/IfConfigurationDialog.java     |  190 -
 .../graph/system/InputConfigurationDialog.java  |  261 --
 .../graph/system/MemoConfigurationDialog.java   |  115 -
 .../graph/system/OutputConfigurationDialog.java |  172 -
 .../system/ReceiveConfigurationDialog.java      |  161 -
 .../ui/dialogs/graph/system/S3FileChooser.java  |  193 -
 .../system/StreamSourceConfigurationDialog.java |  129 -
 .../graph/ws/ServiceInteractionWindow.java      |  132 -
 .../xbaya/ui/dialogs/graph/ws/WSNodeWindow.java |  140 -
 .../monitor/MonitorConfigurationWindow.java     |  196 -
 .../xbaya/ui/dialogs/monitor/MonitorWindow.java |  178 -
 .../dialogs/registry/NewRegistryUserDialog.java |  305 --
 .../ui/dialogs/registry/RegistryWindow.java     |  313 --
 .../registry/browser/JCRBrowserDialog.java      |  117 -
 .../workflow/ParameterPropertyWindow.java       |  170 -
 .../workflow/WorkflowPropertyWindow.java        |  216 -
 .../xbaya/ui/experiment/ExperimentMenu.java     |  110 -
 .../ui/experiment/RegistryLoaderWindow.java     |  239 --
 .../ui/experiment/RegistrySearchResult.java     |  131 -
 .../RegistryWorkflowPublisherWindow.java        |  144 -
 .../WorkflowInterpreterLaunchWindow.java        |  350 --
 .../apache/airavata/xbaya/ui/graph/EdgeGUI.java |  142 -
 .../airavata/xbaya/ui/graph/GraphCanvas.java    | 1375 -------
 .../xbaya/ui/graph/GraphCanvasEvent.java        |   99 -
 .../xbaya/ui/graph/GraphCanvasListener.java     |   32 -
 .../airavata/xbaya/ui/graph/GraphGUI.java       |  198 -
 .../airavata/xbaya/ui/graph/GraphPieceGUI.java  |   36 -
 .../apache/airavata/xbaya/ui/graph/NodeGUI.java |  535 ---
 .../airavata/xbaya/ui/graph/Paintable.java      |   35 -
 .../apache/airavata/xbaya/ui/graph/PortGUI.java |  274 --
 .../xbaya/ui/graph/amazon/InstanceNodeGUI.java  |  166 -
 .../graph/amazon/TerminateInstanceNodeGUI.java  |  160 -
 .../xbaya/ui/graph/dynamic/DynamicNodeGUI.java  |   73 -
 .../graph/subworkflow/SubWorkflowNodeGUI.java   |   89 -
 .../xbaya/ui/graph/system/BlockNodeGUI.java     |   87 -
 .../ui/graph/system/ConfigurableNodeGUI.java    |  140 -
 .../xbaya/ui/graph/system/ConstantNodeGUI.java  |   63 -
 .../ui/graph/system/DifferedInputHandler.java   |   87 -
 .../ui/graph/system/DifferedInputNodeGUI.java   |  101 -
 .../xbaya/ui/graph/system/DoWhileNodeGUI.java   |  191 -
 .../xbaya/ui/graph/system/EndBlockNodeGUI.java  |  176 -
 .../ui/graph/system/EndDoWhileNodeGUI.java      |  178 -
 .../ui/graph/system/EndForEachNodeGUI.java      |  148 -
 .../xbaya/ui/graph/system/EndifNodeGUI.java     |  176 -
 .../xbaya/ui/graph/system/ExitNodeGUI.java      |   98 -
 .../xbaya/ui/graph/system/ForEachNodeGUI.java   |  155 -
 .../xbaya/ui/graph/system/IfNodeGUI.java        |  183 -
 .../xbaya/ui/graph/system/InputNodeGUI.java     |   81 -
 .../xbaya/ui/graph/system/MemoNodeGUI.java      |  107 -
 .../xbaya/ui/graph/system/OutputNodeGUI.java    |   91 -
 .../xbaya/ui/graph/system/ReceiveNodeGUI.java   |  150 -
 .../xbaya/ui/graph/system/S3InputNodeGUI.java   |   81 -
 .../ui/graph/system/StreamSourceNodeGUI.java    |   73 -
 .../airavata/xbaya/ui/graph/ws/WSNodeGUI.java   |  156 -
 .../xbaya/ui/graph/ws/WorkflowNodeGUI.java      |   74 -
 .../xbaya/ui/menues/AmazonEC2MenuItem.java      |  160 -
 .../airavata/xbaya/ui/menues/EditMenuItem.java  |  169 -
 .../airavata/xbaya/ui/menues/MenuIcons.java     |   39 -
 .../xbaya/ui/menues/RegistryMenuItem.java       |  118 -
 .../airavata/xbaya/ui/menues/RunMenuItem.java   |  412 --
 .../airavata/xbaya/ui/menues/ViewMenuItem.java  |  140 -
 .../airavata/xbaya/ui/menues/XBayaMenu.java     |  158 -
 .../airavata/xbaya/ui/menues/XBayaMenuItem.java |  610 ---
 .../xbaya/ui/monitor/MonitorEventHandler.java   |  547 ---
 .../xbaya/ui/monitor/MonitorStarter.java        |  125 -
 .../xbaya/ui/monitor/ResourcePaintable.java     |   65 -
 .../airavata/xbaya/ui/utils/Cancelable.java     |   30 -
 .../airavata/xbaya/ui/utils/DrawUtils.java      |  108 -
 .../airavata/xbaya/ui/utils/ErrorMessages.java  |  240 --
 .../xbaya/ui/views/ComponentViewer.java         |  139 -
 .../xbaya/ui/views/JCRBrowserPanel.java         |  287 --
 .../airavata/xbaya/ui/views/MonitorPanel.java   |  307 --
 .../xbaya/ui/views/ParameterPropertyPanel.java  |  194 -
 .../airavata/xbaya/ui/views/PortViewer.java     |  167 -
 .../airavata/xbaya/ui/widgets/GridPanel.java    |  165 -
 .../airavata/xbaya/ui/widgets/ScrollPanel.java  |  124 -
 .../xbaya/ui/widgets/TabLabelButton.java        |  142 -
 .../xbaya/ui/widgets/TableRenderable.java       |   31 -
 .../xbaya/ui/widgets/ToolbarButton.java         |  109 -
 .../xbaya/ui/widgets/XBayaComboBox.java         |  100 -
 .../xbaya/ui/widgets/XBayaComponent.java        |   35 -
 .../airavata/xbaya/ui/widgets/XBayaLabel.java   |   95 -
 .../xbaya/ui/widgets/XBayaLinkButton.java       |  306 --
 .../airavata/xbaya/ui/widgets/XBayaList.java    |  169 -
 .../xbaya/ui/widgets/XBayaTextArea.java         |  120 -
 .../xbaya/ui/widgets/XBayaTextComponent.java    |   37 -
 .../xbaya/ui/widgets/XBayaTextField.java        |  124 -
 .../airavata/xbaya/ui/widgets/XBayaToolBar.java |  362 --
 .../xbaya/ui/widgets/XbayaEnhancedList.java     |  308 --
 .../xbaya/ui/widgets/amazon/S3Tree.java         |  133 -
 .../xbaya/ui/widgets/amazon/S3TreeModel.java    |   65 -
 .../ui/widgets/component/ComponentSelector.java |  530 ---
 .../component/ComponentSelectorEvent.java       |   85 -
 .../component/ComponentSelectorListener.java    |   32 -
 .../component/ComponentSourceTransferable.java  |   73 -
 .../widgets/component/ComponentTreeModel.java   |   71 -
 .../ui/widgets/component/ComponentTreeNode.java |  107 -
 .../apache/airavata/xbaya/util/AmazonUtil.java  |  150 -
 .../org/apache/airavata/xbaya/util/Data.java    |   70 -
 .../apache/airavata/xbaya/util/GOConstants.java |   30 -
 .../airavata/xbaya/util/GlobusOnlineUtils.java  |  245 --
 .../airavata/xbaya/util/InterpreterUtil.java    |  391 --
 .../airavata/xbaya/util/RegistryConstants.java  |   30 -
 .../airavata/xbaya/util/TransferFile.java       |  170 -
 .../apache/airavata/xbaya/util/XBayaUtil.java   |  353 --
 .../airavata/xbaya/workflow/WorkflowClient.java |  246 --
 .../xbaya/workflow/WorkflowEngineException.java |   42 -
 .../xbaya/workflow/proxy/ProxyWSDL.java         |   87 -
 .../xbaya/workflow/proxy/WorkflowClient.java    |   35 -
 .../xbaya/workflow/proxy/WorkflowContext.java   |   42 -
 .../workflow/proxy/WorkflowProxyException.java  |   64 -
 .../src/main/resources/WorkflowInterpretor.wsdl |   72 -
 .../src/main/resources/images/airavata-2.png    |  Bin 5582 -> 0 bytes
 .../main/resources/images/airavata-config.png   |  Bin 1297 -> 0 bytes
 .../src/main/resources/images/airavata-icon.png |  Bin 584 -> 0 bytes
 .../main/resources/images/airavata-icon2.png    |  Bin 981 -> 0 bytes
 .../src/main/resources/images/airavata-name.png |  Bin 8261 -> 0 bytes
 .../resources/images/airavata-title-text.png    |  Bin 16438 -> 0 bytes
 .../src/main/resources/images/airavata.png      |  Bin 17280 -> 0 bytes
 .../src/main/resources/images/application.png   |  Bin 894 -> 0 bytes
 .../src/main/resources/images/applications.png  |  Bin 657 -> 0 bytes
 .../src/main/resources/images/closed.gif        |  Bin 923 -> 0 bytes
 .../src/main/resources/images/cloud.png         |  Bin 573 -> 0 bytes
 .../src/main/resources/images/experiment.png    |  Bin 543 -> 0 bytes
 .../src/main/resources/images/experiments.png   |  Bin 1142 -> 0 bytes
 .../src/main/resources/images/gfac_url.png      |  Bin 739 -> 0 bytes
 .../src/main/resources/images/gfac_urls.png     |  Bin 816 -> 0 bytes
 .../src/main/resources/images/host.png          |  Bin 652 -> 0 bytes
 .../src/main/resources/images/hosts.png         |  Bin 671 -> 0 bytes
 .../src/main/resources/images/input_para.png    |  Bin 428 -> 0 bytes
 .../src/main/resources/images/jcr-repo.png      |  Bin 1010 -> 0 bytes
 .../src/main/resources/images/leaf.gif          |  Bin 906 -> 0 bytes
 .../src/main/resources/images/menu/jcr.png      |  Bin 1158 -> 0 bytes
 .../src/main/resources/images/menu/new2.png     |  Bin 1175 -> 0 bytes
 .../src/main/resources/images/menu/open1.png    |  Bin 925 -> 0 bytes
 .../src/main/resources/images/menu/open2.png    |  Bin 964 -> 0 bytes
 .../src/main/resources/images/menu/open_dir.png |  Bin 749 -> 0 bytes
 .../src/main/resources/images/menu/pause1.png   |  Bin 1101 -> 0 bytes
 .../resources/images/menu/pause_monitor1.png    |  Bin 873 -> 0 bytes
 .../src/main/resources/images/menu/play3.png    |  Bin 1192 -> 0 bytes
 .../src/main/resources/images/menu/play4.png    |  Bin 765 -> 0 bytes
 .../images/menu/resume_monitoring1.png          |  Bin 957 -> 0 bytes
 .../src/main/resources/images/menu/save1.png    |  Bin 1200 -> 0 bytes
 .../src/main/resources/images/menu/stop.png     |  Bin 316 -> 0 bytes
 .../src/main/resources/images/opened.gif        |  Bin 917 -> 0 bytes
 .../src/main/resources/images/output_para.png   |  Bin 490 -> 0 bytes
 .../src/main/resources/images/parameter.png     |  Bin 544 -> 0 bytes
 .../src/main/resources/images/pause.jpeg        |  Bin 458 -> 0 bytes
 .../src/main/resources/images/play.jpeg         |  Bin 471 -> 0 bytes
 .../src/main/resources/images/registry.png      |  Bin 3419 -> 0 bytes
 .../src/main/resources/images/service.png       |  Bin 871 -> 0 bytes
 .../src/main/resources/images/services.png      |  Bin 899 -> 0 bytes
 .../src/main/resources/images/step.gif          |  Bin 211 -> 0 bytes
 .../src/main/resources/images/stop.jpeg         |  Bin 497 -> 0 bytes
 .../src/main/resources/images/workflow.png      |  Bin 601 -> 0 bytes
 .../resources/images/workflow_templates.png     |  Bin 710 -> 0 bytes
 .../src/main/resources/images/workflows.png     |  Bin 778 -> 0 bytes
 .../xbaya-gui/src/main/resources/services.xml   |   30 -
 .../resources/wsdls/TestCMD_Example1_AWSDL.xml  |   56 -
 .../src/main/resources/wsdls/adder-awsdl.xml    |   63 -
 .../src/main/resources/wsdls/eventing.wsdl      |  332 --
 .../interpreter/ComplexForEachWorkflowTest.java |   73 -
 .../xbaya/interpreter/ComplexMathService.java   |   40 -
 .../interpreter/ComplexMathWorkflowTest.java    |   71 -
 .../interpreter/CrossProductWorkflowTest.java   |   71 -
 .../airavata/xbaya/interpreter/EchoService.java |   28 -
 .../xbaya/interpreter/ForEachWorkflowTest.java  |   73 -
 .../interpreter/LevenshteinDistanceService.java |   48 -
 .../airavata/xbaya/interpreter/Listener.java    |   31 -
 .../xbaya/interpreter/NotificationSender.java   |  204 -
 .../xbaya/interpreter/RegistryServiceTest.java  |  105 -
 .../interpreter/SimpleForEachWorkflowTest.java  |   72 -
 .../interpreter/SimpleMathWorkflowTest.java     |   73 -
 .../xbaya/interpreter/WorkflowTest.java         |   74 -
 .../xbaya/interpreter/WorkflowTrackingTest.java |  105 -
 .../xbaya/interpreter/XBayaClientTest.java      |   80 -
 .../interpreter/XBayaConsolidatedTestSuite.java |   67 -
 .../xbaya/interpreter/utils/ConfigKeys.java     |   34 -
 .../xbaya/interpreter/utils/TestUtilServer.java |  243 --
 .../interpreter/utils/WorkflowTestUtils.java    |   97 -
 modules/xbaya-gui/src/test/java/test.xwf        |  251 --
 .../src/test/resources/axis2_default.xml        |  278 --
 pom.xml                                         |    4 -
 .../airavata-client/create-application/README   |   24 -
 .../create-application/build.xml                |   50 -
 .../airavata-client/create-application/pom.xml  |  118 -
 .../airavata/api/samples/CreateApplication.java |  160 -
 .../main/resources/airavata-client.properties   |   61 -
 samples/airavata-client/pom.xml                 |   29 -
 samples/airavata-client/workflow-run/README     |   24 -
 samples/airavata-client/workflow-run/build.xml  |   50 -
 samples/airavata-client/workflow-run/pom.xml    |  118 -
 .../client/samples/MonitorListener.java         |   83 -
 .../client/samples/MonitorWorkflow.java         |   50 -
 .../airavata/client/samples/RunWorkflow.java    |  159 -
 .../src/main/resources/EchoWorkflow.xwf         |  149 -
 .../main/resources/airavata-client.properties   |   61 -
 .../application-emulators/MockPwscf/Pwscf_Input |   44 -
 .../MockPwscf/Pwscf_Output                      |   30 -
 samples/application-emulators/MockPwscf/README  |   59 -
 .../application-emulators/MockPwscf/pseudo_1    |   25 -
 .../application-emulators/MockPwscf/pseudo_2    |   25 -
 samples/application-emulators/MockPwscf/pwscf.c |  140 -
 samples/application-emulators/mpi/README        |   52 -
 .../application-emulators/mpi/mpi-hello-world.c |   37 -
 .../application-emulators/parameter-app/README  |   36 -
 samples/applications/echo.bat                   |   18 -
 samples/applications/echo.sh                    |   22 -
 samples/applications/echo_out.sh                |   21 -
 samples/complex-math-service/README.txt         |    7 -
 samples/complex-math-service/pom.xml            |   58 -
 .../airavata/samples/ComplexMathService.java    |   40 -
 .../src/main/resources/ComplexMathService.wsdl  |  140 -
 .../src/main/resources/services.xml             |   18 -
 samples/distribution/pom.xml                    |  101 -
 .../src/main/assembly/bin-assembly.xml          |  101 -
 samples/distribution/src/main/resources/INSTALL |   55 -
 samples/distribution/src/main/resources/LICENSE | 2273 -----------
 samples/distribution/src/main/resources/NOTICE  |  163 -
 samples/distribution/src/main/resources/README  |  121 -
 samples/echo-service/README.txt                 |    7 -
 samples/echo-service/pom.xml                    |   58 -
 .../apache/airavata/samples/EchoService.java    |   28 -
 .../src/main/resources/services.xml             |   18 -
 samples/gateway-developer-guide/README.txt      |    7 -
 samples/gateway-developer-guide/pom.xml         |   75 -
 .../airavata/samples/MonitorListener.java       |   84 -
 .../airavata/samples/PasswordCallbackImpl.java  |   39 -
 .../apache/airavata/samples/SimpleGateway.java  |  328 --
 .../src/main/resources/EchoWorkflow.xwf         |  149 -
 .../src/main/resources/SimpleEcho.xwf           |  404 --
 .../main/resources/airavata-client.properties   |   66 -
 .../src/main/resources/gateway.properties       |   24 -
 .../src/main/resources/log4j.properties         |   34 -
 samples/levenshtein-distance-service/README.txt |    7 -
 samples/levenshtein-distance-service/pom.xml    |   58 -
 .../samples/LevenshteinDistanceService.java     |   48 -
 .../resources/LevenshteinDistanceService.wsdl   |   88 -
 .../src/main/resources/services.xml             |   18 -
 samples/pom.xml                                 |   48 -
 samples/provenance-registry-handler/pom.xml     |   39 -
 .../CustomProvenanceDataHandler.java            |  306 --
 samples/sample-gateway/pom.xml                  |   67 -
 .../configurations/airavata-server.properties   |  220 -
 .../src/configurations/client.xml               |   35 -
 .../src/configurations/oauth-privkey.pk8        |   28 -
 .../src/configurations/oauth-pubkey.pem         |    9 -
 .../sample/gateway/ExecutionParameters.java     |  172 -
 .../airavata/sample/gateway/SampleGateway.java  |  176 -
 .../gateway/executor/PasswordCallbackImpl.java  |   54 -
 .../gateway/executor/WorkflowExecutor.java      |  304 --
 .../gateway/userstore/GatewayUserStore.java     |  448 --
 .../airavata/sample/gateway/userstore/User.java |   68 -
 .../src/main/resources/EchoWorkflow.xwf         |  149 -
 .../main/resources/airavata-client.properties   |   70 -
 .../src/main/resources/gateway.properties       |   23 -
 .../src/main/webapp/WEB-INF/web.xml             |   48 -
 .../src/main/webapp/gateway/acs.jsp             |   62 -
 .../src/main/webapp/gateway/callback.jsp        |   78 -
 .../src/main/webapp/gateway/job.jsp             |   95 -
 .../src/main/webapp/gateway/job_execute.jsp     |  120 -
 .../src/main/webapp/gateway/list_users.jsp      |   78 -
 .../src/main/webapp/gateway/logout.jsp          |   35 -
 .../src/main/webapp/gateway/user.jsp            |  102 -
 .../src/main/webapp/images/echowf.png           |  Bin 18770 -> 0 bytes
 .../sample-gateway/src/main/webapp/index.jsp    |   53 -
 .../gateway/executor/WorkflowExecutorTest.java  |  150 -
 samples/simple-math-service/README.txt          |    7 -
 samples/simple-math-service/pom.xml             |   65 -
 .../airavata/samples/SimpleMathService.java     |   81 -
 .../src/main/resources/SimpleMathService.wsdl   |  354 --
 .../src/main/resources/services.xml             |   20 -
 .../simple-service-tracking/README.txt          |   26 -
 .../simple-service-tracking/build.properties    |   25 -
 .../simple-service-tracking/build.xml           |   78 -
 .../conf/configuration.properties               |   24 -
 .../samples/invoke/NotificationSender.java      |  210 -
 .../samples/invoke/SimpleWorkflowTracker.java   |   94 -
 .../samples/util/ConfigKeys.java                |   34 -
 .../workflowtracking/samples/util/Listener.java |   33 -
 samples/workflows/ComplexForEach.xwf            | 3863 ------------------
 samples/workflows/ComplexMath.xwf               | 1880 ---------
 samples/workflows/LevenshteinDistance.xwf       |  844 ----
 samples/workflows/SimpleEcho.xwf                |  404 --
 samples/workflows/SimpleForEach.xwf             |  887 ----
 samples/workflows/SimpleMath.xwf                | 1863 ---------
 875 files changed, 133865 deletions(-)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/airavata/blob/0e2c10f5/modules/commons/json/pom.xml
----------------------------------------------------------------------
diff --git a/modules/commons/json/pom.xml b/modules/commons/json/pom.xml
deleted file mode 100644
index 4697998..0000000
--- a/modules/commons/json/pom.xml
+++ /dev/null
@@ -1,44 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-
-<!--Licensed to the Apache Software Foundation (ASF) under one or more contributor license agreements. See the NOTICE file
-    distributed with this work for additional information regarding copyright ownership. The ASF licenses this file to you under
-    the Apache License, Version 2.0 (theÏ "License"); you may not use this file except in compliance with the License. You may
-    obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to
-    in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
-    ANY ~ KIND, either express or implied. See the License for the specific language governing permissions and limitations under
-    the License. -->
-
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
-    <parent>
-        <artifactId>commons</artifactId>
-        <groupId>org.apache.airavata</groupId>
-        <version>0.12-SNAPSHOT</version>
-    </parent>
-    <modelVersion>4.0.0</modelVersion>
-
-    <artifactId>json</artifactId>
-    <packaging>jar</packaging>
-    <name>Airavata JSON </name>
-    <url>http://airavata.apache.org/</url>
-
-    <dependencies>
-        <dependency>
-            <groupId>org.apache.axis2</groupId>
-            <artifactId>axis2-kernel</artifactId>
-            <version>${axis2.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>de.odysseus.staxon</groupId>
-            <artifactId>staxon</artifactId>
-            <version>1.2</version>
-        </dependency>
-        <dependency>
-            <groupId>de.odysseus.staxon</groupId>
-            <artifactId>staxon-jackson</artifactId>
-            <version>1.2</version>
-        </dependency>
-
-
-    </dependencies>
-
-</project>

http://git-wip-us.apache.org/repos/asf/airavata/blob/0e2c10f5/modules/commons/json/src/main/java/org/apache/airavata/json/StaxonJSONBuilder.java
----------------------------------------------------------------------
diff --git a/modules/commons/json/src/main/java/org/apache/airavata/json/StaxonJSONBuilder.java b/modules/commons/json/src/main/java/org/apache/airavata/json/StaxonJSONBuilder.java
deleted file mode 100644
index 505c423..0000000
--- a/modules/commons/json/src/main/java/org/apache/airavata/json/StaxonJSONBuilder.java
+++ /dev/null
@@ -1,63 +0,0 @@
-/*
- *
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements.  See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership.  The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License.  You may obtain a copy of the License at
- *
- *   http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied.  See the License for the
- * specific language governing permissions and limitations
- * under the License.
- *
- */
-
-package org.apache.airavata.json;
-
-import de.odysseus.staxon.json.JsonXMLConfig;
-import de.odysseus.staxon.json.JsonXMLConfigBuilder;
-import de.odysseus.staxon.json.JsonXMLInputFactory;
-import org.apache.axiom.om.OMAbstractFactory;
-import org.apache.axiom.om.OMElement;
-import org.apache.axiom.om.impl.builder.StAXOMBuilder;
-import org.apache.axiom.soap.SOAPBody;
-import org.apache.axiom.soap.SOAPEnvelope;
-import org.apache.axiom.soap.SOAPFactory;
-import org.apache.axis2.AxisFault;
-import org.apache.axis2.Constants;
-import org.apache.axis2.builder.Builder;
-import org.apache.axis2.context.MessageContext;
-
-
-import javax.xml.stream.XMLStreamException;
-import javax.xml.stream.XMLStreamReader;
-import java.io.InputStream;
-
-
-public class StaxonJSONBuilder implements Builder {
-    @Override
-    public OMElement processDocument(InputStream inputStream, String s, MessageContext messageContext) throws AxisFault {
-        SOAPFactory factory = OMAbstractFactory.getSOAP11Factory();
-        SOAPEnvelope envelope = factory.createSOAPEnvelope();
-        // configure JSON to XML conversion property
-        JsonXMLConfig config = new JsonXMLConfigBuilder().multiplePI(false).prettyPrint(false).build();
-        //
-        try {
-            String charSetEncoding = (String) messageContext.getProperty(Constants.Configuration.CHARACTER_SET_ENCODING);
-            XMLStreamReader reader = new JsonXMLInputFactory(config).createXMLStreamReader(inputStream, charSetEncoding);
-            StAXOMBuilder stAXOMBuilder = new StAXOMBuilder(reader);
-            OMElement message = stAXOMBuilder.getDocumentElement();
-            envelope.getBody().addChild(message);
-        } catch (XMLStreamException e) {
-            throw new AxisFault("Error while creating XMLStreamReader with JsonXMLInputFactory");
-        }
-        return envelope;
-    }
-}

http://git-wip-us.apache.org/repos/asf/airavata/blob/0e2c10f5/modules/commons/json/src/main/java/org/apache/airavata/json/StaxonJSONFormatter.java
----------------------------------------------------------------------
diff --git a/modules/commons/json/src/main/java/org/apache/airavata/json/StaxonJSONFormatter.java b/modules/commons/json/src/main/java/org/apache/airavata/json/StaxonJSONFormatter.java
deleted file mode 100644
index dc42e78..0000000
--- a/modules/commons/json/src/main/java/org/apache/airavata/json/StaxonJSONFormatter.java
+++ /dev/null
@@ -1,106 +0,0 @@
-/*
- *
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements.  See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership.  The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License.  You may obtain a copy of the License at
- *
- *   http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied.  See the License for the
- * specific language governing permissions and limitations
- * under the License.
- *
- */
-
-package org.apache.airavata.json;
-
-import de.odysseus.staxon.json.JsonXMLConfig;
-import de.odysseus.staxon.json.JsonXMLConfigBuilder;
-import de.odysseus.staxon.json.JsonXMLOutputFactory;
-import de.odysseus.staxon.json.stream.jackson.JacksonStreamFactory;
-import org.apache.axiom.om.OMElement;
-import org.apache.axiom.om.OMOutputFormat;
-import org.apache.axis2.AxisFault;
-import org.apache.axis2.Constants;
-import org.apache.axis2.context.MessageContext;
-import org.apache.axis2.transport.MessageFormatter;
-
-import javax.xml.stream.XMLStreamException;
-import javax.xml.stream.XMLStreamReader;
-import javax.xml.stream.XMLStreamWriter;
-import javax.xml.transform.*;
-import javax.xml.transform.stax.StAXResult;
-import javax.xml.transform.stax.StAXSource;
-import java.io.OutputStream;
-import java.net.URL;
-
-public class StaxonJSONFormatter implements MessageFormatter {
-    @Override
-    public byte[] getBytes(MessageContext messageContext, OMOutputFormat omOutputFormat) throws AxisFault {
-        return new byte[0];
-    }
-
-    @Override
-    public void writeTo(MessageContext messageContext, OMOutputFormat omOutputFormat, OutputStream outputStream,
-                        boolean preserve) throws AxisFault {
-        String charSetEncoding = (String) messageContext.getProperty(Constants.Configuration.CHARACTER_SET_ENCODING);
-        JsonXMLConfig config = new JsonXMLConfigBuilder()
-                .autoArray(true)
-                .autoPrimitive(true)
-                .prettyPrint(true)
-                .build();
-
-
-
-        try {
-            OMElement outMessage = messageContext.getEnvelope().getBody().getFirstElement();
-            XMLStreamReader reader = null;
-            if (preserve) {
-                // do not consume the OM
-                reader = outMessage.getXMLStreamReader();
-            }else{
-                // consume the OM
-                reader = outMessage.getXMLStreamReaderWithoutCaching();
-            }
-            Source source = new StAXSource(reader);
-
-            XMLStreamWriter writer = new JsonXMLOutputFactory(config, new JacksonStreamFactory())
-                    .createXMLStreamWriter(outputStream, charSetEncoding);
-            Result result = new StAXResult(writer);
-            String backupProp = System.getProperty("javax.xml.transform.TransformerFactory");
-            System.setProperty("javax.xml.transform.TransformerFactory",
-                    "com.sun.org.apache.xalan.internal.xsltc.trax.TransformerFactoryImpl");
-            TransformerFactory.newInstance().newTransformer().transform(source, result);
-            System.setProperty("javax.xml.transform.TransformerFactory", backupProp);
-        } catch (XMLStreamException e) {
-            throw new AxisFault("Error while writing OMElement to output writer ", e);
-        } catch (TransformerConfigurationException e) {
-            throw new AxisFault("StaxonJSONFormatter threw an error while writing to output ",e);
-        } catch (TransformerException e) {
-            throw new AxisFault("StaxonJSONFormatter threw an error while writing to output",e);
-        }
-
-    }
-
-    @Override
-    public String getContentType(MessageContext messageContext, OMOutputFormat omOutputFormat, String s) {
-        return (String) messageContext.getProperty(Constants.Configuration.CONTENT_TYPE);
-    }
-
-    @Override
-    public URL getTargetAddress(MessageContext messageContext, OMOutputFormat omOutputFormat, URL url) throws AxisFault {
-        return null;
-    }
-
-    @Override
-    public String formatSOAPAction(MessageContext messageContext, OMOutputFormat omOutputFormat, String s) {
-        return null;
-    }
-}

http://git-wip-us.apache.org/repos/asf/airavata/blob/0e2c10f5/modules/commons/pom.xml
----------------------------------------------------------------------
diff --git a/modules/commons/pom.xml b/modules/commons/pom.xml
index e53c3d0..8c55a9f 100644
--- a/modules/commons/pom.xml
+++ b/modules/commons/pom.xml
@@ -34,7 +34,6 @@
                 <module>gfac-schema</module>
                 <module>utils</module>
                 <module>workflow-execution-context</module>
-                <!--module>json</module-->
             </modules>
         </profile>
     </profiles>

http://git-wip-us.apache.org/repos/asf/airavata/blob/0e2c10f5/modules/distribution/pom.xml
----------------------------------------------------------------------
diff --git a/modules/distribution/pom.xml b/modules/distribution/pom.xml
index f236ce9..7ee358f 100644
--- a/modules/distribution/pom.xml
+++ b/modules/distribution/pom.xml
@@ -30,7 +30,6 @@
             <modules>
                 <module>airavata-server</module>
                 <module>airavata-client</module>
-                <!--module>xbaya-gui</module-->
 		<module>release</module>
             </modules>
         </profile>

http://git-wip-us.apache.org/repos/asf/airavata/blob/0e2c10f5/modules/distribution/xbaya-gui/pom.xml
----------------------------------------------------------------------
diff --git a/modules/distribution/xbaya-gui/pom.xml b/modules/distribution/xbaya-gui/pom.xml
deleted file mode 100644
index e3e185f..0000000
--- a/modules/distribution/xbaya-gui/pom.xml
+++ /dev/null
@@ -1,558 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-
-<!--Licensed to the Apache Software Foundation (ASF) under one or more contributor license agreements. See the NOTICE file 
-    distributed with this work for additional information regarding copyright ownership. The ASF licenses this file to you under 
-    the Apache License, Version 2.0 (theÏ "License"); you may not use this file except in compliance with the License. You may 
-    obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to 
-    in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF 
-    ANY ~ KIND, either express or implied. See the License for the specific language governing permissions and limitations under 
-    the License. -->
-
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
-    <parent>
-        <groupId>org.apache.airavata</groupId>
-        <artifactId>distribution</artifactId>
-        <version>0.12-SNAPSHOT</version>
-        <relativePath>../pom.xml</relativePath>
-    </parent>
-
-    <modelVersion>4.0.0</modelVersion>
-    <artifactId>apache-airavata-xbaya-gui</artifactId>
-    <name>Airavata xbaya-gui distribution</name>
-    <packaging>pom</packaging>
-    <url>http://airavata.apache.org/</url>
-
-    <profiles>
-        <profile>
-            <id>default</id>
-            <activation>
-                <activeByDefault>true</activeByDefault>
-            </activation>
-            <build>
-                <plugins>
-                    <plugin>
-                        <groupId>org.apache.maven.plugins</groupId>
-                        <artifactId>maven-compiler-plugin</artifactId>
-                        <configuration>
-                            <encoding>UTF-8</encoding>
-                            <source>1.6</source>
-                            <target>1.6</target>
-                        </configuration>
-                        <executions>
-                            <execution>
-                                <id>default</id>
-                                <phase>compile</phase>
-                                <goals>
-                                    <goal>compile</goal>
-                                </goals>
-                            </execution>
-                        </executions>
-                    </plugin>
-		    <plugin>
-		        <groupId>org.apache.maven.plugins</groupId>
-		        <artifactId>maven-dependency-plugin</artifactId>
-		        <version>2.8</version>
-		        <executions>
-		            <execution>
-		                <id>unpack</id>
-		                <phase>compile</phase>
-		                <goals>
-		                    <goal>unpack</goal>
-		                </goals>
-		                <configuration>
-		                    <artifactItems>
-		                        <artifactItem>
-		                            <groupId>org.apache.airavata</groupId>
-		                            <artifactId>airavata-client-configuration</artifactId>
-		                            <version>${project.version}</version>
-		                            <type>jar</type>
-		                        </artifactItem>
-		                    </artifactItems>
-		                    <outputDirectory>${project.build.directory}/conf</outputDirectory>
-		                </configuration>
-		            </execution>
-		        </executions>
-		    </plugin>
-                    <plugin>
-                        <groupId>org.apache.maven.plugins</groupId>
-                        <artifactId>maven-assembly-plugin</artifactId>
-                        <executions>
-                            <execution>
-                                <id>distribution-package</id>
-                                <phase>compile</phase>
-                                <goals>
-                                    <goal>single</goal>
-                                </goals>
-                                <configuration>
-                                    <finalName>${archieve.name}-${project.version}</finalName>
-                                    <descriptors>
-                                        <descriptor>src/main/assembly/bin-assembly.xml</descriptor>
-                                    </descriptors>
-                                    <attach>false</attach>
-                                </configuration>
-                            </execution>
-                        </executions>
-                    </plugin>
-                    <plugin>
-                        <groupId>org.codehaus.mojo</groupId>
-                        <artifactId>build-helper-maven-plugin</artifactId>
-                        <version>1.7</version>
-                        <executions>
-                            <execution>
-                                <id>bin-artifacts</id>
-                                <phase>package</phase>
-                                <goals>
-                                    <goal>attach-artifact</goal>
-                                </goals>
-                                <configuration>
-                                    <artifacts>
-                                        <artifact>
-                                            <file>${airavata.xbaya-bin.zip}</file>
-                                            <type>zip</type>
-                                            <classifier>bin</classifier>
-                                        </artifact>
-                                        <artifact>
-                                            <file>${airavata.xbaya-bin.tar.gz}</file>
-                                            <type>tar.gz</type>
-                                            <classifier>bin</classifier>
-                                        </artifact>
-                                    </artifacts>
-                                </configuration>
-                            </execution>
-                        </executions>
-                    </plugin>
-                </plugins>
-            </build>
-        </profile>
-        <profile> <!-- JNLP -->
-            <id>jnlp</id>
-            <activation>
-                <activeByDefault>true</activeByDefault>
-            </activation>
-            <build>
-                <plugins>
-                    <plugin>
-                        <artifactId>maven-antrun-plugin</artifactId>
-                        <executions>
-                            <execution>
-                                <id>0-copy-xbaya</id>
-                                <phase>compile</phase>
-                                <configuration>
-                                    <target>
-                                        <taskdef resource="net/sf/antcontrib/antcontrib.properties" classpathref="maven.dependency.classpath" />
-                                        <unzip src="target/apache-airavata-xbaya-gui-${project.version}-bin.zip" dest="${project.build.directory}/temp" />
-                                        <mkdir dir="${jnlp.direcotry}" />
-                                        <mkdir dir="${jnlp.direcotry}/lib" />
-                                        <copy todir="${jnlp.direcotry}/lib">
-                                            <fileset dir="${xbaya.directory}/lib" />
-                                        </copy>
-                                        <copy todir="${jnlp.direcotry}">
-                                            <fileset dir="${project.basedir}/src/main/resources/jnlp" />
-                                        </copy>
-                                        <copy file="${project.basedir}/src/main/resources/airavata-logo.gif" todir="${jnlp.direcotry}" />
-                                    </target>
-                                </configuration>
-                                <goals>
-                                    <goal>run</goal>
-                                </goals>
-                            </execution>
-                        </executions>
-                    </plugin>
-                    <plugin>
-                        <groupId>org.apache.maven.plugins</groupId>
-                        <artifactId>maven-jarsigner-plugin</artifactId>
-                        <version>1.2</version>
-                        <executions>
-                            <execution>
-                                <id>1-sign</id>
-                                <phase>compile</phase>
-                                <goals>
-                                    <goal>sign</goal>
-                                </goals>
-                            </execution>
-                        </executions>
-                        <configuration>
-                            <archiveDirectory>${jnlp.direcotry}/lib</archiveDirectory>
-                            <keystore>${project.basedir}/src/main/resources/xbaya.jks</keystore>
-                            <alias>xbaya</alias>
-                            <storepass>xbaya-secret</storepass>
-                            <keypass>xbaya-secret</keypass>
-                        </configuration>
-                    </plugin>
-                    <plugin>
-                        <groupId>org.codehaus.mojo</groupId>
-                        <artifactId>exec-maven-plugin</artifactId>
-                        <version>1.1.1</version>
-                        <executions>
-                            <execution>
-                                <id>2-execute-jnlp-modifier</id>
-                                <phase>compile</phase>
-                                <goals>
-                                    <goal>java</goal>
-                                </goals>
-                                <configuration>
-                                    <mainClass>org.apache.airavata.distribution.xbaya.jnlp.Main</mainClass>
-                                    <arguments>
-                                        <argument>${jnlp.direcotry}/lib</argument>
-                                        <argument>${jnlp.direcotry}/xbaya.jnlp</argument>
-                                    </arguments>
-                                </configuration>
-                            </execution>
-                        </executions>
-                    </plugin>
-                </plugins>
-            </build>
-        </profile>
-        <profile>
-            <id>zip-jnlp</id>
-            <activation>
-                <activeByDefault>true</activeByDefault>
-            </activation>
-            <build>
-                <plugins>
-                    <plugin>
-                        <artifactId>maven-antrun-plugin</artifactId>
-                        <executions>
-                            <execution>
-                                <id>3-zip-xbaya-jnlp</id>
-                                <phase>package</phase>
-                                <configuration>
-                                    <target>
-                                        <zip destfile="${airavata.xbaya-jnlp.zip}" basedir="${jnlp.direcotry}" />
-                                        <tar destfile="${project.build.directory}/xbaya-jnlp-${project.version}.tar" basedir="${jnlp.direcotry}" />
-                                        <gzip destfile="${airavata.xbaya-jnlp.tar.gz}" src="${project.build.directory}/xbaya-jnlp-${project.version}.tar" />
-                                        <delete file="${project.build.directory}/xbaya-jnlp-${project.version}.tar" />
-                                    </target>
-                                </configuration>
-                                <goals>
-                                    <goal>run</goal>
-                                </goals>
-                            </execution>
-                        </executions>
-                    </plugin>
-                </plugins>
-            </build>
-        </profile> <!-- END JNLP -->
-    </profiles>
-
-    <dependencies>
-        <dependency>
-            <groupId>org.ogce</groupId>
-            <artifactId>xpp3</artifactId>
-            <version>${xpp3.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.ogce</groupId>
-            <artifactId>xpp5</artifactId>
-            <version>${xpp5.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.ogce</groupId>
-            <artifactId>xsul</artifactId>
-            <version>${xsul.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.ogce</groupId>
-            <artifactId>gpel-client</artifactId>
-            <version>${gpel.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.ogce</groupId>
-            <artifactId>atomixmiser</artifactId>
-            <version>${atomixmiser.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>commons-httpclient</groupId>
-            <artifactId>commons-httpclient</artifactId>
-            <version>3.1</version>
-            <exclusions>
-                <exclusion>
-                    <groupId>commons-codec</groupId>
-                    <artifactId>commons-codec</artifactId>
-                </exclusion>
-            </exclusions>
-        </dependency>
-        <dependency>
-            <groupId>commons-codec</groupId>
-            <artifactId>commons-codec</artifactId>
-            <version>1.6</version>
-        </dependency>
-        <dependency>
-            <groupId>org.python</groupId>
-            <artifactId>jython</artifactId>
-            <version>${jython.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>junit</groupId>
-            <artifactId>junit</artifactId>
-            <version>${junit.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.xmlbeans</groupId>
-            <artifactId>xmlbeans</artifactId>
-            <version>${xmlbeans.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.axis2</groupId>
-            <artifactId>axis2-adb</artifactId>
-            <version>${axis2.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.axis2</groupId>
-            <artifactId>axis2-kernel</artifactId>
-            <version>${axis2.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.ws.commons.axiom</groupId>
-            <artifactId>axiom-api</artifactId>
-            <version>1.2.8</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.ws.commons.axiom</groupId>
-            <artifactId>axiom-impl</artifactId>
-            <version>1.2.8</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.ws.commons.axiom</groupId>
-            <artifactId>axiom-dom</artifactId>
-            <version>1.2.8</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.ws.commons.schema</groupId>
-            <artifactId>XmlSchema</artifactId>
-            <version>1.4.2</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.neethi</groupId>
-            <artifactId>neethi</artifactId>
-            <version>2.0.4</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.axis2</groupId>
-            <artifactId>axis2-transport-local</artifactId>
-            <version>${axis2.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.axis2</groupId>
-            <artifactId>axis2-transport-http</artifactId>
-            <version>${axis2.version}</version>
-        </dependency>
-
-        <!-- AMAZON STUFFS -->
-        <dependency>
-            <groupId>com.amazonaws</groupId>
-            <artifactId>aws-java-sdk</artifactId>
-            <version>1.3.20</version>
-        </dependency>
-        <dependency>
-            <groupId>net.java.dev.jets3t</groupId>
-            <artifactId>jets3t</artifactId>
-            <version>0.8.0</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.httpcomponents</groupId>
-            <artifactId>httpclient</artifactId>
-            <version>4.3</version>
-            <type>jar</type>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.httpcomponents</groupId>
-            <artifactId>httpcore</artifactId>
-            <version>4.3</version>
-            <type>jar</type>
-        </dependency>
-
-        <!-- AIRAVATA modules -->
-        <dependency>
-            <groupId>org.apache.airavata</groupId>
-            <artifactId>airavata-xbaya-gui</artifactId>
-            <version>${project.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.airavata</groupId>
-            <artifactId>airavata-workflow-model-core</artifactId>
-            <version>${project.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.airavata</groupId>
-            <artifactId>airavata-workflow-model-component</artifactId>
-            <version>${project.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.airavata</groupId>
-            <artifactId>airavata-message-monitor</artifactId>
-            <version>${project.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.airavata</groupId>
-            <artifactId>airavata-client-api</artifactId>
-            <version>${project.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.airavata</groupId>
-            <artifactId>airavata-message-broker</artifactId>
-            <version>${project.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.airavata</groupId>
-            <artifactId>airavata-common-utils</artifactId>
-            <version>${project.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.airavata</groupId>
-            <artifactId>airavata-workflow-tracking</artifactId>
-            <version>${project.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.airavata</groupId>
-            <artifactId>airavata-jpa-registry</artifactId>
-            <version>${project.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.airavata</groupId>
-            <artifactId>airavata-registry-api</artifactId>
-            <version>${project.version}</version>
-        </dependency>
-
-        <!-- JCR Support -->
-        <!-- TODO need clean up -->
-        <dependency>
-            <groupId>org.apache.airavata</groupId>
-            <artifactId>airavata-gfac-schema-utils</artifactId>
-            <version>${project.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.airavata</groupId>
-            <artifactId>airavata-gfac-core</artifactId>
-            <version>${project.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.airavata</groupId>
-            <artifactId>airavata-gfac-ec2</artifactId>
-            <version>${project.version}</version>
-        </dependency>
-
-        <dependency>
-            <groupId>org.slf4j</groupId>
-            <artifactId>slf4j-api</artifactId>
-        </dependency>
-        <dependency>
-            <groupId>org.slf4j</groupId>
-            <artifactId>jcl-over-slf4j</artifactId>
-            <scope>runtime</scope>
-        </dependency>
-        <dependency>
-            <groupId>org.slf4j</groupId>
-            <artifactId>slf4j-log4j12</artifactId>
-            <scope>runtime</scope>
-        </dependency>
-        <dependency>
-            <groupId>javax.jcr</groupId>
-            <artifactId>jcr</artifactId>
-            <version>${jcr.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.airavata</groupId>
-            <artifactId>airavata-workflow-execution-context</artifactId>
-            <version>${project.version}</version>
-        </dependency>
-        <!--dependency> <groupId>org.apache.airavata</groupId> <artifactId>airavata-jpa-registry</artifactId> <version>${project.version}</version> 
-            </dependency -->
-        <dependency>
-            <groupId>org.apache.derby</groupId>
-            <artifactId>derbyclient</artifactId>
-            <version>${derby.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>xerces</groupId>
-            <artifactId>xercesImpl</artifactId>
-            <version>2.9.1</version>
-        </dependency>
-        <dependency>
-            <groupId>org.codehaus.jackson</groupId>
-            <artifactId>jackson-mapper-asl</artifactId>
-            <version>1.9.2</version>
-        </dependency>
-        <dependency>
-            <groupId>org.codehaus.jackson</groupId>
-            <artifactId>jackson-xc</artifactId>
-            <version>1.9.2</version>
-        </dependency>
-        <dependency>
-            <groupId>org.codehaus.jackson</groupId>
-            <artifactId>jackson-jaxrs</artifactId>
-            <version>1.9.2</version>
-        </dependency>
-        <dependency>
-            <groupId>org.codehaus.jackson</groupId>
-            <artifactId>jackson-core-asl</artifactId>
-            <version>1.9.2</version>
-        </dependency>
-        <dependency>
-            <groupId>com.sun.jersey</groupId>
-            <artifactId>jersey-servlet</artifactId>
-            <version>${jersey.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>com.sun.jersey</groupId>
-            <artifactId>jersey-json</artifactId>
-            <version>${jersey.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>com.sun.jersey.contribs</groupId>
-            <artifactId>jersey-multipart</artifactId>
-            <version>${jersey.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>com.sun.jersey</groupId>
-            <artifactId>jersey-client</artifactId>
-            <version>${jersey.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>com.sun.jersey</groupId>
-            <artifactId>jersey-core</artifactId>
-            <version>${jersey.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>ant-contrib</groupId>
-            <artifactId>ant-contrib</artifactId>
-            <version>1.0b3</version>
-            <exclusions>
-                <exclusion>
-                    <groupId>ant</groupId>
-                    <artifactId>ant</artifactId>
-                </exclusion>
-            </exclusions>
-        </dependency>
-        <dependency>
-            <groupId>org.apache.ant</groupId>
-            <artifactId>ant-nodeps</artifactId>
-            <version>1.8.1</version>
-        </dependency>
-        <dependency>
-            <groupId>com.google.guava</groupId>
-            <artifactId>guava</artifactId>
-            <version>12.0</version>
-        </dependency>
-        <dependency>
-            <groupId>org.bouncycastle</groupId>
-            <artifactId>bcprov-jdk16</artifactId>
-            <version>1.45</version>
-        </dependency>
-    </dependencies>
-    <properties>
-        <jersey.version>1.13</jersey.version>
-        <grizzly.version>2.0.0-M3</grizzly.version>
-        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
-        <archieve.name>apache-airavata-xbaya-gui</archieve.name>
-        <used.axis2.release>${axis2.version}</used.axis2.release>
-        <airavata.xbaya-dist.name>${archieve.name}-${project.version}</airavata.xbaya-dist.name>
-        <airavata.xbaya-bin.zip>${project.build.directory}/${airavata.xbaya-dist.name}-bin.zip</airavata.xbaya-bin.zip>
-        <airavata.xbaya-bin.tar.gz>${project.build.directory}/${airavata.xbaya-dist.name}-bin.tar.gz</airavata.xbaya-bin.tar.gz>
-        <airavata.xbaya-jnlp.name>xbaya-jnlp-${project.version}</airavata.xbaya-jnlp.name>
-        <airavata.xbaya-jnlp.zip>${project.build.directory}/${airavata.xbaya-jnlp.name}.zip</airavata.xbaya-jnlp.zip>
-        <airavata.xbaya-jnlp.tar.gz>${project.build.directory}/${airavata.xbaya-jnlp.name}.tar.gz</airavata.xbaya-jnlp.tar.gz>
-        <xbaya.directory>${project.build.directory}/temp/apache-airavata-xbaya-gui-${project.version}</xbaya.directory>
-        <jnlp.direcotry>${project.build.directory}/jnlp</jnlp.direcotry>
-    </properties>
-</project>