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Posted to notifications@accumulo.apache.org by "Josh Elser (JIRA)" <ji...@apache.org> on 2014/10/29 05:03:34 UTC
[jira] [Updated] (ACCUMULO-3213) EOFException on metadata tablet
during DeleteTableDuringSplitIT
[ https://issues.apache.org/jira/browse/ACCUMULO-3213?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Josh Elser updated ACCUMULO-3213:
---------------------------------
Status: Patch Available (was: Open)
https://github.com/joshelser/accumulo/compare/ACCUMULO-3213-filearchive?expand=1
> EOFException on metadata tablet during DeleteTableDuringSplitIT
> ---------------------------------------------------------------
>
> Key: ACCUMULO-3213
> URL: https://issues.apache.org/jira/browse/ACCUMULO-3213
> Project: Accumulo
> Issue Type: Bug
> Components: tserver
> Affects Versions: 1.6.1
> Reporter: Josh Elser
> Assignee: Josh Elser
> Fix For: 1.6.2, 1.7.0
>
> Time Spent: 20m
> Remaining Estimate: 0h
>
> Notice the following on the tabletserver during a failed run of DeleteTableDuringSplitIT
> {noformat}
> 2014-10-07 09:00:45,769 [tserver.TabletServer] WARN : lookup failed for tablet !0;~<
> java.io.EOFException
> at java.io.DataInputStream.readByte(DataInputStream.java:267)
> at org.apache.accumulo.core.file.rfile.RelativeKey.fastSkip(RelativeKey.java:314)
> at org.apache.accumulo.core.file.rfile.RFile$LocalityGroupReader._seek(RFile.java:675)
> at org.apache.accumulo.core.file.rfile.RFile$LocalityGroupReader.seek(RFile.java:607)
> at org.apache.accumulo.core.iterators.system.LocalityGroupIterator.seek(LocalityGroupIterator.java:138)
> at org.apache.accumulo.core.file.rfile.RFile$Reader.seek(RFile.java:979)
> at org.apache.accumulo.server.problems.ProblemReportingIterator.seek(ProblemReportingIterator.java:94)
> at org.apache.accumulo.core.iterators.system.MultiIterator.seek(MultiIterator.java:105)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.system.StatsIterator.seek(StatsIterator.java:64)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.system.DeletingIterator.seek(DeletingIterator.java:67)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.SkippingIterator.seek(SkippingIterator.java:42)
> at org.apache.accumulo.core.iterators.system.ColumnFamilySkippingIterator.seek(ColumnFamilySkippingIterator.java:123)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.Filter.seek(Filter.java:64)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.Filter.seek(Filter.java:64)
> at org.apache.accumulo.core.iterators.system.SynchronizedIterator.seek(SynchronizedIterator.java:56)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.Combiner.seek(Combiner.java:179)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.user.VersioningIterator.seek(VersioningIterator.java:81)
> at org.apache.accumulo.core.iterators.user.RowEncodingIterator.seek(RowEncodingIterator.java:162)
> at org.apache.accumulo.core.iterators.system.SourceSwitchingIterator.readNext(SourceSwitchingIterator.java:121)
> at org.apache.accumulo.core.iterators.system.SourceSwitchingIterator.seek(SourceSwitchingIterator.java:167)
> at org.apache.accumulo.tserver.Tablet.lookup(Tablet.java:1570)
> at org.apache.accumulo.tserver.Tablet.lookup(Tablet.java:1677)
> at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler$LookupTask.run(TabletServer.java:1140)
> at org.apache.accumulo.trace.instrument.TraceRunnable.run(TraceRunnable.java:47)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> at org.apache.accumulo.trace.instrument.TraceRunnable.run(TraceRunnable.java:47)
> at org.apache.accumulo.core.util.LoggingRunnable.run(LoggingRunnable.java:34)
> at java.lang.Thread.run(Thread.java:745)
> 2014-10-07 09:00:45,773 [tserver.TabletServer] WARN : exception while doing multi-scan
> java.lang.RuntimeException: java.io.EOFException
> at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler$LookupTask.run(TabletServer.java:1151)
> at org.apache.accumulo.trace.instrument.TraceRunnable.run(TraceRunnable.java:47)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> at org.apache.accumulo.trace.instrument.TraceRunnable.run(TraceRunnable.java:47)
> at org.apache.accumulo.core.util.LoggingRunnable.run(LoggingRunnable.java:34)
> at java.lang.Thread.run(Thread.java:745)
> Caused by: java.io.EOFException
> at java.io.DataInputStream.readByte(DataInputStream.java:267)
> at org.apache.accumulo.core.file.rfile.RelativeKey.fastSkip(RelativeKey.java:314)
> at org.apache.accumulo.core.file.rfile.RFile$LocalityGroupReader._seek(RFile.java:675)
> at org.apache.accumulo.core.file.rfile.RFile$LocalityGroupReader.seek(RFile.java:607)
> at org.apache.accumulo.core.iterators.system.LocalityGroupIterator.seek(LocalityGroupIterator.java:138)
> at org.apache.accumulo.core.file.rfile.RFile$Reader.seek(RFile.java:979)
> at org.apache.accumulo.server.problems.ProblemReportingIterator.seek(ProblemReportingIterator.java:94)
> at org.apache.accumulo.core.iterators.system.MultiIterator.seek(MultiIterator.java:105)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.system.StatsIterator.seek(StatsIterator.java:64)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.system.DeletingIterator.seek(DeletingIterator.java:67)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.SkippingIterator.seek(SkippingIterator.java:42)
> at org.apache.accumulo.core.iterators.system.ColumnFamilySkippingIterator.seek(ColumnFamilySkippingIterator.java:123)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.Filter.seek(Filter.java:64)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.Filter.seek(Filter.java:64)
> at org.apache.accumulo.core.iterators.system.SynchronizedIterator.seek(SynchronizedIterator.java:56)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.Combiner.seek(Combiner.java:179)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.user.VersioningIterator.seek(VersioningIterator.java:81)
> at org.apache.accumulo.core.iterators.user.RowEncodingIterator.seek(RowEncodingIterator.java:162)
> at org.apache.accumulo.core.iterators.system.SourceSwitchingIterator.readNext(SourceSwitchingIterator.java:121)
> at org.apache.accumulo.core.iterators.system.SourceSwitchingIterator.seek(SourceSwitchingIterator.java:167)
> at org.apache.accumulo.tserver.Tablet.lookup(Tablet.java:1570)
> at org.apache.accumulo.tserver.Tablet.lookup(Tablet.java:1677)
> at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler$LookupTask.run(TabletServer.java:1140)
> ... 6 more
> 2014-10-07 09:00:45,773 [problems.ProblemReports] DEBUG: Filing problem report !0 FILE_READ file:/grid/0/hadoopqe/artifacts/accumulo/test/target/mini-tests/org.apache.accumulo.test.functional.SimpleMacIT/1412669116364_24699/accumulo/tables/!0/default_tablet/A000018n.rf
> 2014-10-07 09:00:45,775 [tserver.TabletServer] WARN : Failed to get multiscan result
> java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.io.EOFException
> at org.apache.accumulo.tserver.TabletServer$ScanTask.get(TabletServer.java:780)
> at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.continueMultiScan(TabletServer.java:1443)
> at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.continueMultiScan(TabletServer.java:1429)
> at sun.reflect.GeneratedMethodAccessor24.invoke(Unknown Source)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:606)
> at org.apache.accumulo.trace.instrument.thrift.RpcServerInvocationHandler.invoke(RpcServerInvocationHandler.java:46)
> at org.apache.accumulo.server.util.RpcWrapper$1.invoke(RpcWrapper.java:44)
> at com.sun.proxy.$Proxy14.continueMultiScan(Unknown Source)
> at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$continueMultiScan.getResult(TabletClientService.java:2278)
> at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$continueMultiScan.getResult(TabletClientService.java:2262)
> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> at org.apache.accumulo.server.util.TServerUtils$TimedProcessor.process(TServerUtils.java:168)
> at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> at java.lang.Thread.run(Thread.java:745)
> Caused by: java.lang.RuntimeException: java.io.EOFException
> at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler$LookupTask.run(TabletServer.java:1151)
> at org.apache.accumulo.trace.instrument.TraceRunnable.run(TraceRunnable.java:47)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> at org.apache.accumulo.trace.instrument.TraceRunnable.run(TraceRunnable.java:47)
> at org.apache.accumulo.core.util.LoggingRunnable.run(LoggingRunnable.java:34)
> ... 1 more
> Caused by: java.io.EOFException
> at java.io.DataInputStream.readByte(DataInputStream.java:267)
> at org.apache.accumulo.core.file.rfile.RelativeKey.fastSkip(RelativeKey.java:314)
> at org.apache.accumulo.core.file.rfile.RFile$LocalityGroupReader._seek(RFile.java:675)
> at org.apache.accumulo.core.file.rfile.RFile$LocalityGroupReader.seek(RFile.java:607)
> at org.apache.accumulo.core.iterators.system.LocalityGroupIterator.seek(LocalityGroupIterator.java:138)
> at org.apache.accumulo.core.file.rfile.RFile$Reader.seek(RFile.java:979)
> at org.apache.accumulo.server.problems.ProblemReportingIterator.seek(ProblemReportingIterator.java:94)
> at org.apache.accumulo.core.iterators.system.MultiIterator.seek(MultiIterator.java:105)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.system.StatsIterator.seek(StatsIterator.java:64)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.system.DeletingIterator.seek(DeletingIterator.java:67)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.SkippingIterator.seek(SkippingIterator.java:42)
> at org.apache.accumulo.core.iterators.system.ColumnFamilySkippingIterator.seek(ColumnFamilySkippingIterator.java:123)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.Filter.seek(Filter.java:64)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.Filter.seek(Filter.java:64)
> at org.apache.accumulo.core.iterators.system.SynchronizedIterator.seek(SynchronizedIterator.java:56)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.Combiner.seek(Combiner.java:179)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.user.VersioningIterator.seek(VersioningIterator.java:81)
> at org.apache.accumulo.core.iterators.user.RowEncodingIterator.seek(RowEncodingIterator.java:162)
> at org.apache.accumulo.core.iterators.system.SourceSwitchingIterator.readNext(SourceSwitchingIterator.java:121)
> at org.apache.accumulo.core.iterators.system.SourceSwitchingIterator.seek(SourceSwitchingIterator.java:167)
> at org.apache.accumulo.tserver.Tablet.lookup(Tablet.java:1570)
> at org.apache.accumulo.tserver.Tablet.lookup(Tablet.java:1677)
> at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler$LookupTask.run(TabletServer.java:1140)
> ... 6 more
> 2014-10-07 09:00:45,782 [tserver.TabletServer$ThriftClientHandler] ERROR: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.io.EOFException
> java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.io.EOFException
> at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.continueMultiScan(TabletServer.java:1456)
> at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.continueMultiScan(TabletServer.java:1429)
> at sun.reflect.GeneratedMethodAccessor24.invoke(Unknown Source)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:606)
> at org.apache.accumulo.trace.instrument.thrift.RpcServerInvocationHandler.invoke(RpcServerInvocationHandler.java:46)
> at org.apache.accumulo.server.util.RpcWrapper$1.invoke(RpcWrapper.java:44)
> at com.sun.proxy.$Proxy14.continueMultiScan(Unknown Source)
> at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$continueMultiScan.getResult(TabletClientService.java:2278)
> at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$continueMultiScan.getResult(TabletClientService.java:2262)
> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> at org.apache.accumulo.server.util.TServerUtils$TimedProcessor.process(TServerUtils.java:168)
> at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> at java.lang.Thread.run(Thread.java:745)
> Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.io.EOFException
> at org.apache.accumulo.tserver.TabletServer$ScanTask.get(TabletServer.java:780)
> at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.continueMultiScan(TabletServer.java:1443)
> ... 16 more
> Caused by: java.lang.RuntimeException: java.io.EOFException
> at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler$LookupTask.run(TabletServer.java:1151)
> at org.apache.accumulo.trace.instrument.TraceRunnable.run(TraceRunnable.java:47)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> at org.apache.accumulo.trace.instrument.TraceRunnable.run(TraceRunnable.java:47)
> at org.apache.accumulo.core.util.LoggingRunnable.run(LoggingRunnable.java:34)
> ... 1 more
> Caused by: java.io.EOFException
> at java.io.DataInputStream.readByte(DataInputStream.java:267)
> at org.apache.accumulo.core.file.rfile.RelativeKey.fastSkip(RelativeKey.java:314)
> at org.apache.accumulo.core.file.rfile.RFile$LocalityGroupReader._seek(RFile.java:675)
> at org.apache.accumulo.core.file.rfile.RFile$LocalityGroupReader.seek(RFile.java:607)
> at org.apache.accumulo.core.iterators.system.LocalityGroupIterator.seek(LocalityGroupIterator.java:138)
> at org.apache.accumulo.core.file.rfile.RFile$Reader.seek(RFile.java:979)
> at org.apache.accumulo.server.problems.ProblemReportingIterator.seek(ProblemReportingIterator.java:94)
> at org.apache.accumulo.core.iterators.system.MultiIterator.seek(MultiIterator.java:105)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.system.StatsIterator.seek(StatsIterator.java:64)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.system.DeletingIterator.seek(DeletingIterator.java:67)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.SkippingIterator.seek(SkippingIterator.java:42)
> at org.apache.accumulo.core.iterators.system.ColumnFamilySkippingIterator.seek(ColumnFamilySkippingIterator.java:123)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.Filter.seek(Filter.java:64)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.Filter.seek(Filter.java:64)
> at org.apache.accumulo.core.iterators.system.SynchronizedIterator.seek(SynchronizedIterator.java:56)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.Combiner.seek(Combiner.java:179)
> at org.apache.accumulo.core.iterators.WrappingIterator.seek(WrappingIterator.java:101)
> at org.apache.accumulo.core.iterators.user.VersioningIterator.seek(VersioningIterator.java:81)
> at org.apache.accumulo.core.iterators.user.RowEncodingIterator.seek(RowEncodingIterator.java:162)
> at org.apache.accumulo.core.iterators.system.SourceSwitchingIterator.readNext(SourceSwitchingIterator.java:121)
> at org.apache.accumulo.core.iterators.system.SourceSwitchingIterator.seek(SourceSwitchingIterator.java:167)
> at org.apache.accumulo.tserver.Tablet.lookup(Tablet.java:1570)
> at org.apache.accumulo.tserver.Tablet.lookup(Tablet.java:1677)
> at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler$LookupTask.run(TabletServer.java:1140)
> ... 6 more
> 2014-10-07 09:00:45,783 [thrift.ProcessFunction] ERROR: Internal error processing continueMultiScan
> org.apache.thrift.TException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.io.EOFException
> at org.apache.accumulo.server.util.RpcWrapper$1.invoke(RpcWrapper.java:48)
> at com.sun.proxy.$Proxy14.continueMultiScan(Unknown Source)
> at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$continueMultiScan.getResult(TabletClientService.java:2278)
> at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$continueMultiScan.getResult(TabletClientService.java:2262)
> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> at org.apache.accumulo.server.util.TServerUtils$TimedProcessor.process(TServerUtils.java:168)
> at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> at java.lang.Thread.run(Thread.java:745)
> {noformat}
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