You are viewing a plain text version of this content. The canonical link for it is here.
Posted to dev@ctakes.apache.org by Peter Abramowitsch <pa...@gmail.com> on 2021/10/26 13:09:47 UTC
Question about use of Time Annotators in 4.0.1 (trunk)
I have a couple of questions about the TimeAnnotators forward and backward
1. The BackwardsTimeAnnotator complains that it doesn't know whether it is
in training mode when there is no "inTraining" parameter. But when I
supply it with the value false, then it complains that it doesn't have a
classifier jar path, as if it now really thinks it's in training! So
what's the trick to make it happy that it's not in training.
2. The unit tests for the time annotators contain the two extra pipeline
steps:
- CopyNPChunksToLookupWindowAnnotations.class
- RemoveEnclosedLookupWindows.class
Are these needed for regular use of the Time annotators or is this just a
Unit test feature.
Peter
Re: Question about use of Time Annotators in 4.0.1 (trunk) [EXTERNAL]
Posted by Peter Abramowitsch <pa...@gmail.com>.
That's great info, thank you, Sean!
I keep forgetting that the sub pipers may have more recent information that
some of the unit tests.
P.
On Tue, Oct 26, 2021 at 3:24 PM Finan, Sean <
Sean.Finan@childrens.harvard.edu> wrote:
> Hi Peter,
>
> I use the piper files, and temporal sub piper TemporalSubPipe.piper in
> ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/pipeline
>
> contains the following:
>
> // Commands and parameters to create a default temporal processing
> sub-pipeline. This is not a full pipeline.
>
> // 'Generic' Events. Use addDescription and let the EventAnnotator set
> itself up with defaults.
> addDescription EventAnnotator
>
> // Times. Use addLogged to log start and finish of processing. There
> aren't default models, so set specifically
> add BackwardsTimeAnnotator
> classifierJarPath=/org/apache/ctakes/temporal/ae/timeannotator/model.jar
>
> // DocTimeRel: the relation bin for Events to the Document Creation Time.
> add DocTimeRelAnnotator
> classifierJarPath=/org/apache/ctakes/temporal/ae/doctimerel/model.jar
>
> // Event - Time binary relations.
> add EventTimeRelationAnnotator
> classifierJarPath=/org/apache/ctakes/temporal/ae/eventtime/model.jar
>
> // Event - Event binary relations.
> add EventEventRelationAnnotator
> classifierJarPath=/org/apache/ctakes/temporal/ae/eventevent/model.jar
>
>
> The last time that I ran this it completed successfully.
>
> Sean
>
>
> ________________________________________
> From: Peter Abramowitsch <pa...@gmail.com>
> Sent: Tuesday, October 26, 2021 9:09 AM
> To: dev@ctakes.apache.org
> Subject: Question about use of Time Annotators in 4.0.1 (trunk) [EXTERNAL]
>
> * External Email - Caution *
>
>
> I have a couple of questions about the TimeAnnotators forward and backward
>
> 1. The BackwardsTimeAnnotator complains that it doesn't know whether it is
> in training mode when there is no "inTraining" parameter. But when I
> supply it with the value false, then it complains that it doesn't have a
> classifier jar path, as if it now really thinks it's in training! So
> what's the trick to make it happy that it's not in training.
>
> 2. The unit tests for the time annotators contain the two extra pipeline
> steps:
>
> - CopyNPChunksToLookupWindowAnnotations.class
> - RemoveEnclosedLookupWindows.class
>
> Are these needed for regular use of the Time annotators or is this just a
> Unit test feature.
>
> Peter
>
Re: Question about use of Time Annotators in 4.0.1 (trunk) [EXTERNAL]
Posted by "Finan, Sean" <Se...@childrens.harvard.edu>.
Hi Peter,
I use the piper files, and temporal sub piper TemporalSubPipe.piper in
ctakes-temporal-res/src/main/resources/org/apache/ctakes/temporal/pipeline
contains the following:
// Commands and parameters to create a default temporal processing sub-pipeline. This is not a full pipeline.
// 'Generic' Events. Use addDescription and let the EventAnnotator set itself up with defaults.
addDescription EventAnnotator
// Times. Use addLogged to log start and finish of processing. There aren't default models, so set specifically
add BackwardsTimeAnnotator classifierJarPath=/org/apache/ctakes/temporal/ae/timeannotator/model.jar
// DocTimeRel: the relation bin for Events to the Document Creation Time.
add DocTimeRelAnnotator classifierJarPath=/org/apache/ctakes/temporal/ae/doctimerel/model.jar
// Event - Time binary relations.
add EventTimeRelationAnnotator classifierJarPath=/org/apache/ctakes/temporal/ae/eventtime/model.jar
// Event - Event binary relations.
add EventEventRelationAnnotator classifierJarPath=/org/apache/ctakes/temporal/ae/eventevent/model.jar
The last time that I ran this it completed successfully.
Sean
________________________________________
From: Peter Abramowitsch <pa...@gmail.com>
Sent: Tuesday, October 26, 2021 9:09 AM
To: dev@ctakes.apache.org
Subject: Question about use of Time Annotators in 4.0.1 (trunk) [EXTERNAL]
* External Email - Caution *
I have a couple of questions about the TimeAnnotators forward and backward
1. The BackwardsTimeAnnotator complains that it doesn't know whether it is
in training mode when there is no "inTraining" parameter. But when I
supply it with the value false, then it complains that it doesn't have a
classifier jar path, as if it now really thinks it's in training! So
what's the trick to make it happy that it's not in training.
2. The unit tests for the time annotators contain the two extra pipeline
steps:
- CopyNPChunksToLookupWindowAnnotations.class
- RemoveEnclosedLookupWindows.class
Are these needed for regular use of the Time annotators or is this just a
Unit test feature.
Peter