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Posted to issues@hbase.apache.org by "ragarkar (via GitHub)" <gi...@apache.org> on 2023/04/28 11:38:58 UTC
[GitHub] [hbase] ragarkar opened a new pull request, #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
ragarkar opened a new pull request, #5210:
URL: https://github.com/apache/hbase/pull/5210
…th javax.ws.rs.api jar
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[GitHub] [hbase] Apache-HBase commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1553196780
:broken_heart: **-1 overall**
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| GITHUB PR | https://github.com/apache/hbase/pull/5210 |
| JIRA Issue | HBASE-27820 |
| Optional Tests | javac javadoc unit shadedjars compile |
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[GitHub] [hbase] ragarkar commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "ragarkar (via GitHub)" <gi...@apache.org>.
ragarkar commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1535724946
> And we have shaded jersey in hbase-thirdparty and in hbase we should be using the shaded one, so could you please provide more information about the conflicts? What is the stack trace looks like?
>
> Thanks.
Yes. I could see that hbase is using the shaded library, but it also adds the javax.ws.rs-api*.jar to the classpath while starting the server. Atlas co-processor on the other hand is using the non-shaded version of javax libraries which I think, is causing the conflict. Since HBase is not using the non-shaded version, I think, it's safe for HBase to not add it to the classpath. However, the library might be needed by some other components and hence, I am not sure if removing it from the bundle is safe or not.
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[GitHub] [hbase] Apache-HBase commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1568410516
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| GITHUB PR | https://github.com/apache/hbase/pull/5210 |
| JIRA Issue | HBASE-27820 |
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[GitHub] [hbase] Apache9 commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "Apache9 (via GitHub)" <gi...@apache.org>.
Apache9 commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1535769913
The jars are required when running UTs, where we want to start mini MR cluster, IIRC.
For me I do not think we need to ship these jars, as we do not want to start a mini MR cluster even when starting a standalone mini hbase cluster.
But better ask this on the dev list. If no objections, we could remove these jars from the bundle.
Thanks.
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[GitHub] [hbase] Apache-HBase commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1553036626
:broken_heart: **-1 overall**
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| JIRA Issue | HBASE-27820 |
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[GitHub] [hbase] Apache-HBase commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1568158640
:broken_heart: **-1 overall**
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| JIRA Issue | HBASE-27820 |
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[GitHub] [hbase] wchevreuil merged pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "wchevreuil (via GitHub)" <gi...@apache.org>.
wchevreuil merged PR #5210:
URL: https://github.com/apache/hbase/pull/5210
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[GitHub] [hbase] Apache-HBase commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1536649646
:broken_heart: **-1 overall**
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| GITHUB PR | https://github.com/apache/hbase/pull/5210 |
| JIRA Issue | HBASE-27820 |
| Optional Tests | javac javadoc unit shadedjars compile |
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[GitHub] [hbase] ragarkar commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "ragarkar (via GitHub)" <gi...@apache.org>.
ragarkar commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1558691748
The test failures seen above are because of timeouts. Is it possible to either suppress these errors or rerun the tests to see if they pass during rerun?
[ERROR] org.apache.hadoop.hbase.io.hfile.TestBlockEvictionOnRegionMovement Time elapsed: 772.781 s <<< ERROR!
org.junit.runners.model.TestTimedOutException: test timed out after 780 seconds
at java.base@11.0.17/java.lang.Object.wait(Native Method)
at java.base@11.0.17/java.lang.Thread.join(Thread.java:1308)
at app//org.apache.hadoop.hbase.util.Threads.threadDumpingIsAlive(Threads.java:111)
at app//org.apache.hadoop.hbase.LocalHBaseCluster.join(LocalHBaseCluster.java:396)
at app//org.apache.hadoop.hbase.SingleProcessHBaseCluster.waitUntilShutDown(SingleProcessHBaseCluster.java:886)
at app//org.apache.hadoop.hbase.HBaseTestingUtil.shutdownMiniHBaseCluster(HBaseTestingUtil.java:1060)
at app//org.apache.hadoop.hbase.HBaseTestingUtil.shutdownMiniCluster(HBaseTestingUtil.java:1042)
at app//org.apache.hadoop.hbase.io.hfile.TestBlockEvictionOnRegionMovement.tearDown(TestBlockEvictionOnRegionMovement.java:173)
at java.base@11.0.17/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base@11.0.17/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base@11.0.17/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base@11.0.17/java.lang.reflect.Method.invoke(Method.java:566)
at app//org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at app//org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at app//org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at app//org.junit.internal.runners.statements.RunAfters.invokeMethod(RunAfters.java:46)
at app//org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:33)
at app//org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at app//org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at app//org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at app//org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at app//org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at app//org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at app//org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
at app//org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at app//org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at app//org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at app//org.junit.internal.runners.statements.FailOnTimeout$CallableStatement.call(FailOnTimeout.java:299)
at app//org.junit.internal.runners.statements.FailOnTimeout$CallableStatement.call(FailOnTimeout.java:293)
at java.base@11.0.17/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base@11.0.17/java.lang.Thread.run(Thread.java:829)
[ERROR] org.apache.hadoop.hbase.replication.TestReplicationSmallTests.testGetReplicationPeerState[0: serialPeer=true] Time elapsed: 606.411 s <<< ERROR!
org.apache.hadoop.hbase.exceptions.TimeoutIOException: java.util.concurrent.TimeoutException
at org.apache.hadoop.hbase.util.FutureUtils.get(FutureUtils.java:202)
at org.apache.hadoop.hbase.client.Admin.removeReplicationPeer(Admin.java:1998)
at org.apache.hadoop.hbase.replication.TestReplicationBase.removePeer(TestReplicationBase.java:309)
at org.apache.hadoop.hbase.replication.TestReplicationBase.tearDownBase(TestReplicationBase.java:315)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.RunAfters.invokeMethod(RunAfters.java:46)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:33)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27)
at org.junit.internal.runners.statements.FailOnTimeout$CallableStatement.call(FailOnTimeout.java:299)
at org.junit.internal.runners.statements.FailOnTimeout$CallableStatement.call(FailOnTimeout.java:293)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.lang.Thread.run(Thread.java:750)
Caused by: java.util.concurrent.TimeoutException
at java.util.concurrent.CompletableFuture.timedGet(CompletableFuture.java:1784)
at java.util.concurrent.CompletableFuture.get(CompletableFuture.java:1928)
at org.apache.hadoop.hbase.util.FutureUtils.get(FutureUtils.java:196)
... 36 more
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[GitHub] [hbase] Apache-HBase commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1567832419
:confetti_ball: **+1 overall**
| Vote | Subsystem | Runtime | Comment |
|:----:|----------:|--------:|:--------|
| +0 :ok: | reexec | 1m 5s | Docker mode activated. |
||| _ Prechecks _ |
| +1 :green_heart: | dupname | 0m 0s | No case conflicting files found. |
| +0 :ok: | shelldocs | 0m 0s | Shelldocs was not available. |
| +1 :green_heart: | @author | 0m 0s | The patch does not contain any @author tags. |
||| _ master Compile Tests _ |
| +0 :ok: | mvndep | 0m 12s | Maven dependency ordering for branch |
| +1 :green_heart: | mvninstall | 2m 46s | master passed |
| +1 :green_heart: | compile | 4m 42s | master passed |
| +1 :green_heart: | spotless | 0m 40s | branch has no errors when running spotless:check. |
||| _ Patch Compile Tests _ |
| +0 :ok: | mvndep | 0m 15s | Maven dependency ordering for patch |
| +1 :green_heart: | mvninstall | 2m 34s | the patch passed |
| +1 :green_heart: | compile | 4m 40s | the patch passed |
| +1 :green_heart: | javac | 4m 40s | the patch passed |
| +1 :green_heart: | shellcheck | 0m 0s | There were no new shellcheck issues. |
| +1 :green_heart: | whitespace | 0m 0s | The patch has no whitespace issues. |
| +1 :green_heart: | xml | 0m 7s | The patch has no ill-formed XML file. |
| +1 :green_heart: | hadoopcheck | 9m 6s | Patch does not cause any errors with Hadoop 3.2.4 3.3.5. |
| +1 :green_heart: | spotless | 0m 41s | patch has no errors when running spotless:check. |
||| _ Other Tests _ |
| +1 :green_heart: | asflicense | 0m 50s | The patch does not generate ASF License warnings. |
| | | 33m 30s | |
| Subsystem | Report/Notes |
|----------:|:-------------|
| Docker | ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/4/artifact/yetus-general-check/output/Dockerfile |
| GITHUB PR | https://github.com/apache/hbase/pull/5210 |
| JIRA Issue | HBASE-27820 |
| Optional Tests | dupname asflicense spotless shellcheck shelldocs javac hadoopcheck xml compile |
| uname | Linux a13f317b7108 5.4.0-144-generic #161-Ubuntu SMP Fri Feb 3 14:49:04 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux |
| Build tool | maven |
| Personality | dev-support/hbase-personality.sh |
| git revision | master / 79c985f246 |
| Default Java | Eclipse Adoptium-11.0.17+8 |
| Max. process+thread count | 75 (vs. ulimit of 30000) |
| modules | C: hbase-resource-bundle hbase-http hbase-mapreduce hbase-it hbase-rest . U: . |
| Console output | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/4/console |
| versions | git=2.34.1 maven=3.8.6 shellcheck=0.8.0 |
| Powered by | Apache Yetus 0.12.0 https://yetus.apache.org |
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[GitHub] [hbase] ragarkar commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "ragarkar (via GitHub)" <gi...@apache.org>.
ragarkar commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1539450137
Tests are failing with the following stacktrace:
[ERROR] org.apache.hadoop.hbase.mapreduce.TestHBaseMRTestingUtility.testMRYarnConfigsPopulation Time elapsed: 0.214 s <<< ERROR!
java.lang.NoClassDefFoundError: javax/ws/rs/WebApplicationException
at java.base/java.lang.ClassLoader.defineClass1(Native Method)
at java.base/java.lang.ClassLoader.defineClass(ClassLoader.java:1017)
at java.base/java.security.SecureClassLoader.defineClass(SecureClassLoader.java:174)
at java.base/jdk.internal.loader.BuiltinClassLoader.defineClass(BuiltinClassLoader.java:800)
at java.base/jdk.internal.loader.BuiltinClassLoader$4.run(BuiltinClassLoader.java:711)
at java.base/jdk.internal.loader.BuiltinClassLoader$4.run(BuiltinClassLoader.java:706)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/jdk.internal.loader.BuiltinClassLoader.findClassOnClassPathOrNull(BuiltinClassLoader.java:719)
at java.base/jdk.internal.loader.BuiltinClassLoader.loadClassOrNull(BuiltinClassLoader.java:621)
at java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:579)
at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:522)
at org.apache.hadoop.yarn.server.MiniYARNCluster.setNonHARMConfigurationWithEphemeralPorts(MiniYARNCluster.java:338)
at org.apache.hadoop.yarn.server.MiniYARNCluster.serviceInit(MiniYARNCluster.java:306)
at org.apache.hadoop.mapreduce.v2.MiniMRYarnCluster.serviceInit(MiniMRYarnCluster.java:211)
at org.apache.hadoop.service.AbstractService.init(AbstractService.java:164)
at org.apache.hadoop.mapred.MiniMRClientClusterFactory.create(MiniMRClientClusterFactory.java:80)
at org.apache.hadoop.mapred.MiniMRCluster.<init>(MiniMRCluster.java:188)
at org.apache.hadoop.mapred.MiniMRCluster.<init>(MiniMRCluster.java:176)
at org.apache.hadoop.mapred.MiniMRCluster.<init>(MiniMRCluster.java:168)
at org.apache.hadoop.mapred.MiniMRCluster.<init>(MiniMRCluster.java:129)
at org.apache.hadoop.hbase.HBaseTestingUtil.startMiniMapReduceCluster(HBaseTestingUtil.java:2352)
at org.apache.hadoop.hbase.HBaseTestingUtil.startMiniMapReduceCluster(HBaseTestingUtil.java:2285)
at org.apache.hadoop.hbase.mapreduce.TestHBaseMRTestingUtility.testMRYarnConfigsPopulation(TestHBaseMRTestingUtility.java:64)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.apache.hadoop.hbase.SystemExitRule$1.evaluate(SystemExitRule.java:39)
at org.junit.internal.runners.statements.FailOnTimeout$CallableStatement.call(FailOnTimeout.java:299)
at org.junit.internal.runners.statements.FailOnTimeout$CallableStatement.call(FailOnTimeout.java:293)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.lang.Thread.run(Thread.java:829)
Caused by: java.lang.ClassNotFoundException: javax.ws.rs.WebApplicationException
at java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:581)
at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:522)
... 47 more
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[GitHub] [hbase] Apache-HBase commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1527437347
:confetti_ball: **+1 overall**
| Vote | Subsystem | Runtime | Comment |
|:----:|----------:|--------:|:--------|
| +0 :ok: | reexec | 0m 38s | Docker mode activated. |
| -0 :warning: | yetus | 0m 2s | Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck |
||| _ Prechecks _ |
||| _ master Compile Tests _ |
||| _ Patch Compile Tests _ |
||| _ Other Tests _ |
| | | 1m 46s | |
| Subsystem | Report/Notes |
|----------:|:-------------|
| Docker | ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/1/artifact/yetus-jdk11-hadoop3-check/output/Dockerfile |
| GITHUB PR | https://github.com/apache/hbase/pull/5210 |
| JIRA Issue | HBASE-27820 |
| Optional Tests | |
| uname | Linux b302c94269bf 5.4.0-1099-aws #107~18.04.1-Ubuntu SMP Fri Mar 17 16:49:05 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux |
| Build tool | maven |
| Personality | dev-support/hbase-personality.sh |
| git revision | master / a2cfa6822a |
| Max. process+thread count | 38 (vs. ulimit of 30000) |
| modules | C: . U: . |
| Console output | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/1/console |
| versions | git=2.34.1 maven=3.8.6 |
| Powered by | Apache Yetus 0.12.0 https://yetus.apache.org |
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[GitHub] [hbase] ragarkar commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "ragarkar (via GitHub)" <gi...@apache.org>.
ragarkar commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1534502909
> I think we should try to not ship this jar in the publish tarball, instead of excluding it when starting?
I will push a change similar to the one in HBASE-26813 to see what all failures are seen with the change. Regarding removing the jar from the publish tarball, not sure if any other components depend on it.
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[GitHub] [hbase] ankitsinghal commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "ankitsinghal (via GitHub)" <gi...@apache.org>.
ankitsinghal commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1567791437
@ragarkar , the changes look good to me
I have re-triggered the Precommit job , let's see how the test responds, but it will be wise if you can execute the failed tests locally to confirm the same meanwhile
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[GitHub] [hbase] Apache-HBase commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1552797674
:confetti_ball: **+1 overall**
| Vote | Subsystem | Runtime | Comment |
|:----:|----------:|--------:|:--------|
| +0 :ok: | reexec | 3m 26s | Docker mode activated. |
||| _ Prechecks _ |
| +1 :green_heart: | dupname | 0m 0s | No case conflicting files found. |
| +0 :ok: | shelldocs | 0m 0s | Shelldocs was not available. |
| +1 :green_heart: | @author | 0m 0s | The patch does not contain any @author tags. |
||| _ master Compile Tests _ |
| +0 :ok: | mvndep | 0m 18s | Maven dependency ordering for branch |
| +1 :green_heart: | mvninstall | 3m 32s | master passed |
| +1 :green_heart: | compile | 4m 44s | master passed |
| +1 :green_heart: | spotless | 0m 42s | branch has no errors when running spotless:check. |
||| _ Patch Compile Tests _ |
| +0 :ok: | mvndep | 0m 15s | Maven dependency ordering for patch |
| +1 :green_heart: | mvninstall | 3m 18s | the patch passed |
| +1 :green_heart: | compile | 4m 45s | the patch passed |
| +1 :green_heart: | javac | 4m 45s | the patch passed |
| +1 :green_heart: | shellcheck | 0m 1s | There were no new shellcheck issues. |
| +1 :green_heart: | whitespace | 0m 0s | The patch has no whitespace issues. |
| +1 :green_heart: | xml | 0m 7s | The patch has no ill-formed XML file. |
| +1 :green_heart: | hadoopcheck | 12m 33s | Patch does not cause any errors with Hadoop 3.2.4 3.3.5. |
| +1 :green_heart: | spotless | 0m 40s | patch has no errors when running spotless:check. |
||| _ Other Tests _ |
| +1 :green_heart: | asflicense | 0m 59s | The patch does not generate ASF License warnings. |
| | | 43m 2s | |
| Subsystem | Report/Notes |
|----------:|:-------------|
| Docker | ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/3/artifact/yetus-general-check/output/Dockerfile |
| GITHUB PR | https://github.com/apache/hbase/pull/5210 |
| JIRA Issue | HBASE-27820 |
| Optional Tests | dupname asflicense spotless shellcheck shelldocs javac hadoopcheck xml compile |
| uname | Linux 318da376e8c8 5.4.0-144-generic #161-Ubuntu SMP Fri Feb 3 14:49:04 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux |
| Build tool | maven |
| Personality | dev-support/hbase-personality.sh |
| git revision | master / 93ddd7060d |
| Default Java | Eclipse Adoptium-11.0.17+8 |
| Max. process+thread count | 86 (vs. ulimit of 30000) |
| modules | C: hbase-resource-bundle hbase-http hbase-mapreduce hbase-it hbase-rest . U: . |
| Console output | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/3/console |
| versions | git=2.34.1 maven=3.8.6 shellcheck=0.8.0 |
| Powered by | Apache Yetus 0.12.0 https://yetus.apache.org |
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[GitHub] [hbase] ragarkar commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "ragarkar (via GitHub)" <gi...@apache.org>.
ragarkar commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1561341584
@Apache9 , can you please take a look at the latest patch? The changes essentially avoid adding the javax.ws.rs-api jar to the bundle. There are couple of test failures reported during the test runs, but they are all timeout exceptions which I believe might be flaky and may go away on a rerun. Can we trigger a rerun to check that?
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[GitHub] [hbase] Apache-HBase commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1527440017
:confetti_ball: **+1 overall**
| Vote | Subsystem | Runtime | Comment |
|:----:|----------:|--------:|:--------|
| +0 :ok: | reexec | 0m 47s | Docker mode activated. |
||| _ Prechecks _ |
| +1 :green_heart: | dupname | 0m 1s | No case conflicting files found. |
| +0 :ok: | shelldocs | 0m 1s | Shelldocs was not available. |
| +1 :green_heart: | @author | 0m 0s | The patch does not contain any @author tags. |
||| _ master Compile Tests _ |
| +1 :green_heart: | spotless | 1m 0s | branch has no errors when running spotless:check. |
||| _ Patch Compile Tests _ |
| -0 :warning: | shellcheck | 0m 2s | The patch generated 2 new + 38 unchanged - 1 fixed = 40 total (was 39) |
| +1 :green_heart: | whitespace | 0m 0s | The patch has no whitespace issues. |
| +1 :green_heart: | spotless | 0m 57s | patch has no errors when running spotless:check. |
||| _ Other Tests _ |
| +1 :green_heart: | asflicense | 0m 15s | The patch does not generate ASF License warnings. |
| | | 4m 19s | |
| Subsystem | Report/Notes |
|----------:|:-------------|
| Docker | ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/1/artifact/yetus-general-check/output/Dockerfile |
| GITHUB PR | https://github.com/apache/hbase/pull/5210 |
| JIRA Issue | HBASE-27820 |
| Optional Tests | dupname asflicense spotless shellcheck shelldocs |
| uname | Linux 01cceee51d71 5.4.0-1094-aws #102~18.04.1-Ubuntu SMP Tue Jan 10 21:07:03 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux |
| Build tool | maven |
| Personality | dev-support/hbase-personality.sh |
| git revision | master / a2cfa6822a |
| shellcheck | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/1/artifact/yetus-general-check/output/diff-patch-shellcheck.txt |
| Max. process+thread count | 44 (vs. ulimit of 30000) |
| modules | C: . U: . |
| Console output | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/1/console |
| versions | git=2.34.1 maven=3.8.6 shellcheck=0.8.0 |
| Powered by | Apache Yetus 0.12.0 https://yetus.apache.org |
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[GitHub] [hbase] Apache9 commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "Apache9 (via GitHub)" <gi...@apache.org>.
Apache9 commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1527577124
I think we should try to not ship this jar in the publish tarball, instead of excluding it when starting?
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[GitHub] [hbase] Apache-HBase commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1536731160
:broken_heart: **-1 overall**
| Vote | Subsystem | Runtime | Comment |
|:----:|----------:|--------:|:--------|
| +0 :ok: | reexec | 2m 13s | Docker mode activated. |
| -0 :warning: | yetus | 0m 3s | Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck |
||| _ Prechecks _ |
||| _ master Compile Tests _ |
| +0 :ok: | mvndep | 0m 17s | Maven dependency ordering for branch |
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| +1 :green_heart: | compile | 1m 28s | master passed |
| +1 :green_heart: | shadedjars | 4m 43s | branch has no errors when building our shaded downstream artifacts. |
| +1 :green_heart: | javadoc | 1m 55s | master passed |
||| _ Patch Compile Tests _ |
| +0 :ok: | mvndep | 0m 13s | Maven dependency ordering for patch |
| +1 :green_heart: | mvninstall | 2m 49s | the patch passed |
| +1 :green_heart: | compile | 1m 30s | the patch passed |
| +1 :green_heart: | javac | 1m 30s | the patch passed |
| +1 :green_heart: | shadedjars | 4m 42s | patch has no errors when building our shaded downstream artifacts. |
| +1 :green_heart: | javadoc | 1m 53s | the patch passed |
||| _ Other Tests _ |
| -1 :x: | unit | 326m 56s | root in the patch failed. |
| | | 356m 41s | |
| Subsystem | Report/Notes |
|----------:|:-------------|
| Docker | ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/2/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile |
| GITHUB PR | https://github.com/apache/hbase/pull/5210 |
| JIRA Issue | HBASE-27820 |
| Optional Tests | javac javadoc unit shadedjars compile |
| uname | Linux 0d2548fdf979 5.4.0-1099-aws #107~18.04.1-Ubuntu SMP Fri Mar 17 16:49:05 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux |
| Build tool | maven |
| Personality | dev-support/hbase-personality.sh |
| git revision | master / dca0622b62 |
| Default Java | Temurin-1.8.0_352-b08 |
| unit | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/2/artifact/yetus-jdk8-hadoop3-check/output/patch-unit-root.txt |
| Test Results | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/2/testReport/ |
| Max. process+thread count | 2454 (vs. ulimit of 30000) |
| modules | C: hbase-resource-bundle hbase-http hbase-it hbase-rest . U: . |
| Console output | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/2/console |
| versions | git=2.34.1 maven=3.8.6 |
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[GitHub] [hbase] Apache9 commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "Apache9 (via GitHub)" <gi...@apache.org>.
Apache9 commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1534517115
And we have shaded jersey in hbase-thirdparty and in hbase we should be using the shaded one, so could you please provide more information about the conflicts? What is the stack trace looks like?
Thanks.
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[GitHub] [hbase] ragarkar commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "ragarkar (via GitHub)" <gi...@apache.org>.
ragarkar commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1535690822
Here is the stacktrace that is seen while starting the master node:
2022-11-17 10:32:26,423 ERROR org.apache.hadoop.hbase.master.HMaster: ***** ABORTING master atlas-zahf7j-master0.atlas-d7.l2ov-m7vs.int.cldr.work,16000,1668681139462: The coprocessor org.apache.atlas.hbase.hook.HBaseAtlasCoprocessor threw java.io.IOException: java.lang.InstantiationException: org.apache.atlas.hbase.hook.HBaseAtlasCoprocessor *****
java.io.IOException: java.lang.InstantiationException: org.apache.atlas.hbase.hook.HBaseAtlasCoprocessor
at org.apache.hadoop.hbase.coprocessor.CoprocessorHost.checkAndLoadInstance(CoprocessorHost.java:280)
at org.apache.hadoop.hbase.coprocessor.CoprocessorHost.loadSystemCoprocessors(CoprocessorHost.java:171)
at org.apache.hadoop.hbase.master.MasterCoprocessorHost.<init>(MasterCoprocessorHost.java:155)
at org.apache.hadoop.hbase.master.HMaster.initializeCoprocessorHost(HMaster.java:3916)
at org.apache.hadoop.hbase.master.HMaster.finishActiveMasterInitialization(HMaster.java:895)
at org.apache.hadoop.hbase.master.HMaster.startActiveMasterManager(HMaster.java:2189)
at org.apache.hadoop.hbase.master.HMaster.lambda$run$0(HMaster.java:520)
at java.lang.Thread.run(Thread.java:750)
Caused by: java.lang.InstantiationException: org.apache.atlas.hbase.hook.HBaseAtlasCoprocessor
at org.apache.hadoop.hbase.master.MasterCoprocessorHost.checkAndGetInstance(MasterCoprocessorHost.java:189)
at org.apache.hadoop.hbase.master.MasterCoprocessorHost.checkAndGetInstance(MasterCoprocessorHost.java:70)
at org.apache.hadoop.hbase.coprocessor.CoprocessorHost.checkAndLoadInstance(CoprocessorHost.java:274)
... 7 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.hadoop.hbase.master.MasterCoprocessorHost.checkAndGetInstance(MasterCoprocessorHost.java:176)
... 9 more
Caused by: java.lang.AbstractMethodError: javax.ws.rs.core.UriBuilder.uri(Ljava/lang/String;)Ljavax/ws/rs/core/UriBuilder;
at javax.ws.rs.core.UriBuilder.fromUri(UriBuilder.java:96)
at org.apache.atlas.AtlasBaseClient.initializeState(AtlasBaseClient.java:483)
at org.apache.atlas.AtlasBaseClient.initializeState(AtlasBaseClient.java:469)
at org.apache.atlas.AtlasBaseClient.<init>(AtlasBaseClient.java:143)
at org.apache.atlas.AtlasBaseClient.<init>(AtlasBaseClient.java:139)
at org.apache.atlas.AtlasBaseClient.<init>(AtlasBaseClient.java:135)
at org.apache.atlas.AtlasClientV2.<init>(AtlasClientV2.java:146)
at org.apache.atlas.notification.rest.RestNotification.setupAtlasClientV2(RestNotification.java:88)
at org.apache.atlas.notification.rest.RestNotification.<init>(RestNotification.java:65)
at org.apache.atlas.kafka.NotificationProvider.get(NotificationProvider.java:55)
at org.apache.atlas.hook.AtlasHook.<clinit>(AtlasHook.java:107)
at org.apache.atlas.hbase.hook.HBaseAtlasCoprocessor.<init>(HBaseAtlasCoprocessor.java:46)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at java.lang.Class.newInstance(Class.java:442)
at org.apache.atlas.hbase.hook.HBaseAtlasCoprocessor.init(HBaseAtlasCoprocessor.java:80)
at org.apache.atlas.hbase.hook.HBaseAtlasCoprocessor.<init>(HBaseAtlasCoprocessor.java:60)
... 14 more
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[GitHub] [hbase] ragarkar commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "ragarkar (via GitHub)" <gi...@apache.org>.
ragarkar commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1539851434
@Apache9 I think, a fix is needed in apache/hadoop/yarn to remove these jars or use shaded jars to avoid this issue. Until, that is done, our builds will keep on failing with the above mentioned error. Do you think, we can go back to my original change to avoid adding the javax.ws.rs-api jar to the hbase classpath while starting?
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[GitHub] [hbase] Apache-HBase commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1527438075
:confetti_ball: **+1 overall**
| Vote | Subsystem | Runtime | Comment |
|:----:|----------:|--------:|:--------|
| +0 :ok: | reexec | 1m 16s | Docker mode activated. |
| -0 :warning: | yetus | 0m 4s | Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck |
||| _ Prechecks _ |
||| _ master Compile Tests _ |
||| _ Patch Compile Tests _ |
||| _ Other Tests _ |
| | | 2m 29s | |
| Subsystem | Report/Notes |
|----------:|:-------------|
| Docker | ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/1/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile |
| GITHUB PR | https://github.com/apache/hbase/pull/5210 |
| JIRA Issue | HBASE-27820 |
| Optional Tests | |
| uname | Linux 6c8680849bba 5.4.0-144-generic #161-Ubuntu SMP Fri Feb 3 14:49:04 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux |
| Build tool | maven |
| Personality | dev-support/hbase-personality.sh |
| git revision | master / a2cfa6822a |
| Max. process+thread count | 31 (vs. ulimit of 30000) |
| modules | C: . U: . |
| Console output | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/1/console |
| versions | git=2.34.1 maven=3.8.6 |
| Powered by | Apache Yetus 0.12.0 https://yetus.apache.org |
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[GitHub] [hbase] ragarkar commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "ragarkar (via GitHub)" <gi...@apache.org>.
ragarkar commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1558692051
retest
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[GitHub] [hbase] Apache-HBase commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1536390761
:confetti_ball: **+1 overall**
| Vote | Subsystem | Runtime | Comment |
|:----:|----------:|--------:|:--------|
| +0 :ok: | reexec | 1m 7s | Docker mode activated. |
||| _ Prechecks _ |
| +1 :green_heart: | dupname | 0m 0s | No case conflicting files found. |
| +0 :ok: | shelldocs | 0m 1s | Shelldocs was not available. |
| +1 :green_heart: | @author | 0m 0s | The patch does not contain any @author tags. |
||| _ master Compile Tests _ |
| +0 :ok: | mvndep | 0m 18s | Maven dependency ordering for branch |
| +1 :green_heart: | mvninstall | 3m 33s | master passed |
| +1 :green_heart: | compile | 4m 43s | master passed |
| +1 :green_heart: | spotless | 0m 42s | branch has no errors when running spotless:check. |
||| _ Patch Compile Tests _ |
| +0 :ok: | mvndep | 0m 15s | Maven dependency ordering for patch |
| +1 :green_heart: | mvninstall | 3m 19s | the patch passed |
| +1 :green_heart: | compile | 4m 38s | the patch passed |
| +1 :green_heart: | javac | 4m 38s | the patch passed |
| +1 :green_heart: | shellcheck | 0m 2s | There were no new shellcheck issues. |
| +1 :green_heart: | whitespace | 0m 0s | The patch has no whitespace issues. |
| +1 :green_heart: | xml | 0m 7s | The patch has no ill-formed XML file. |
| +1 :green_heart: | hadoopcheck | 12m 32s | Patch does not cause any errors with Hadoop 3.2.4 3.3.4. |
| +1 :green_heart: | spotless | 0m 41s | patch has no errors when running spotless:check. |
||| _ Other Tests _ |
| +1 :green_heart: | asflicense | 0m 48s | The patch does not generate ASF License warnings. |
| | | 40m 9s | |
| Subsystem | Report/Notes |
|----------:|:-------------|
| Docker | ClientAPI=1.42 ServerAPI=1.42 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/2/artifact/yetus-general-check/output/Dockerfile |
| GITHUB PR | https://github.com/apache/hbase/pull/5210 |
| JIRA Issue | HBASE-27820 |
| Optional Tests | dupname asflicense spotless shellcheck shelldocs javac hadoopcheck xml compile |
| uname | Linux 85087337d642 5.4.0-144-generic #161-Ubuntu SMP Fri Feb 3 14:49:04 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux |
| Build tool | maven |
| Personality | dev-support/hbase-personality.sh |
| git revision | master / dca0622b62 |
| Default Java | Eclipse Adoptium-11.0.17+8 |
| Max. process+thread count | 86 (vs. ulimit of 30000) |
| modules | C: hbase-resource-bundle hbase-http hbase-it hbase-rest . U: . |
| Console output | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/2/console |
| versions | git=2.34.1 maven=3.8.6 shellcheck=0.8.0 |
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[GitHub] [hbase] Apache9 commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "Apache9 (via GitHub)" <gi...@apache.org>.
Apache9 commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1540328899
This is a known issue. I mean we could try to exclude these jars in hbase-assembly?
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[GitHub] [hbase] Apache9 commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "Apache9 (via GitHub)" <gi...@apache.org>.
Apache9 commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1568449547
In this way we will not ship the java ws api jar in hbase-assembly?
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[GitHub] [hbase] ragarkar commented on pull request #5210: HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
Posted by "ragarkar (via GitHub)" <gi...@apache.org>.
ragarkar commented on PR #5210:
URL: https://github.com/apache/hbase/pull/5210#issuecomment-1568343928
@ankitsinghal, I have verified that the tests pass in the local builds.
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