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Posted to dev@ctakes.apache.org by Greg Silverman <gm...@umn.edu.INVALID> on 2021/02/02 15:51:36 UTC
4.0.1 build
Any chance of pushing 4.0.1 into the available prebuilt download? Had to
revert from it to 4.0.0.1 after the authentication switch, and have to say
it is painfully slow in comparison.
Thanks for the consideration.
Greg--
--
Greg M. Silverman
Senior Systems Developer
NLP/IE <https://healthinformatics.umn.edu/research/nlpie-group>
Department of Surgery
University of Minnesota
gms@umn.edu
Re: 4.0.1 build [EXTERNAL]
Posted by Greg Silverman <gm...@umn.edu.INVALID>.
I second the thanks!
On a more practical note, is there a chance that there could be a 4.0.1
pre-release build for download, with all the caveats attached?
Greg---
On Wed, Feb 3, 2021 at 5:45 PM Tomasz Oliwa <ol...@uchicago.edu> wrote:
> From a users perspective, I would also really appreciate a
> ready-to-download release of 4.0.1. In any case, thanks for the continuous
> work on cTAKES.
>
> Regards,
> Tomasz
>
> ________________________________________
> From: Greg Silverman <gm...@umn.edu.INVALID>
> Sent: Wednesday, February 3, 2021 2:32 PM
> To: dev@ctakes.apache.org
> Subject: Re: 4.0.1 build [EXTERNAL]
>
> One other observation is that 4.0.0.1 is much less memory efficient than
> 4.0.1. I'm annotating the same set of notes I had previously annotated with
> 4.0.1 and just got a heap space error, which is something we never got with
> 4.0.1 (both 4.0.0.1 and 4.0.1 were using the default settings).
>
> Greg--
>
> On Tue, Feb 2, 2021 at 10:22 AM Finan, Sean <
> Sean.Finan@childrens.harvard.edu> wrote:
>
> > > 4.0.1 (trunk) is faster than 4.0.0.1 (4.0.0 Patch) ?
> > - That is good to hear! Well, not that the older is slower, but that the
> > newer is heading in the right direction.
> >
> > > if/when 4.0.1 (trunk) might become the "latest official release"
> > - I don't really know. It really depends upon any loose ends (unfinished
> > code) being wrapped up, testing and documentation being performed, and a
> > hundred little things being aligned to get it to a releasable state. It
> > requires a team effort, and getting enough volunteers together with
> > substantial overlapping free time is difficult to say the least. Of
> > course, a greater number of volunteers helps spread the burden.
> >
> > Sean
> > ________________________________________
> > From: Greg Silverman <gm...@umn.edu.INVALID>
> > Sent: Tuesday, February 2, 2021 11:09 AM
> > To: dev@ctakes.apache.org
> > Subject: Re: 4.0.1 build [EXTERNAL]
> >
> > * External Email - Caution *
> >
> >
> > Hi Sean,
> > Yes to both.
> >
> > Best!
> >
> > Greg--
> >
> >
> > On Tue, Feb 2, 2021 at 10:06 AM Finan, Sean <
> > Sean.Finan@childrens.harvard.edu> wrote:
> >
> > > Hi Greg,
> > >
> > > just to clarify, 4.0.1 (trunk) is faster than 4.0.0.1 (4.0.0 Patch) ?
> > >
> > > Are you asking if/when 4.0.1 (trunk) might become the "latest official
> > > release"?
> > >
> > > Sean
> > > ________________________________________
> > > From: Greg Silverman <gm...@umn.edu.INVALID>
> > > Sent: Tuesday, February 2, 2021 10:51 AM
> > > To: dev@ctakes.apache.org
> > > Subject: 4.0.1 build [EXTERNAL]
> > >
> > > * External Email - Caution *
> > >
> > >
> > > Any chance of pushing 4.0.1 into the available prebuilt download? Had
> to
> > > revert from it to 4.0.0.1 after the authentication switch, and have to
> > say
> > > it is painfully slow in comparison.
> > >
> > > Thanks for the consideration.
> > >
> > > Greg--
> > >
> > > --
> > > Greg M. Silverman
> > > Senior Systems Developer
> > > NLP/IE <
> > >
> >
> https://urldefense.proofpoint.com/v2/url?u=https-3A__healthinformatics.umn.edu_research_nlpie-2Dgroup&d=DwIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LF15pjBJqfVeGecrPv1H1tcNxJCNgg1ozXYU9PPTPEM&s=B9hgFneo5bNXdU4DEV-LmL1kNMaGJGhQpHnzJmWhI-s&e=
> > > >
> > > Department of Surgery
> > > University of Minnesota
> > > gms@umn.edu
> > >
> >
> >
> > --
> > Greg M. Silverman
> > Senior Systems Developer
> > NLP/IE <
> >
> https://urldefense.proofpoint.com/v2/url?u=https-3A__healthinformatics.umn.edu_research_nlpie-2Dgroup&d=DwIFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=JHayxKiMLy3a9QIY99ZppYoVq30OHHyHHNA0PuymcmE&s=2m70jxe9XC8GUwPk6AtihYOtbSdXrt1-3TZxq36P9hc&e=
> > >
> > Department of Surgery
> > University of Minnesota
> > gms@umn.edu
> >
>
>
> --
> Greg M. Silverman
> Senior Systems Developer
> NLP/IE <https://healthinformatics.umn.edu/research/nlpie-group>
> Department of Surgery
> University of Minnesota
> gms@umn.edu
>
--
Greg M. Silverman
Senior Systems Developer
NLP/IE <https://healthinformatics.umn.edu/research/nlpie-group>
Department of Surgery
University of Minnesota
gms@umn.edu
Re: 4.0.1 build [EXTERNAL]
Posted by Tomasz Oliwa <ol...@uchicago.edu>.
From a users perspective, I would also really appreciate a ready-to-download release of 4.0.1. In any case, thanks for the continuous work on cTAKES.
Regards,
Tomasz
________________________________________
From: Greg Silverman <gm...@umn.edu.INVALID>
Sent: Wednesday, February 3, 2021 2:32 PM
To: dev@ctakes.apache.org
Subject: Re: 4.0.1 build [EXTERNAL]
One other observation is that 4.0.0.1 is much less memory efficient than
4.0.1. I'm annotating the same set of notes I had previously annotated with
4.0.1 and just got a heap space error, which is something we never got with
4.0.1 (both 4.0.0.1 and 4.0.1 were using the default settings).
Greg--
On Tue, Feb 2, 2021 at 10:22 AM Finan, Sean <
Sean.Finan@childrens.harvard.edu> wrote:
> > 4.0.1 (trunk) is faster than 4.0.0.1 (4.0.0 Patch) ?
> - That is good to hear! Well, not that the older is slower, but that the
> newer is heading in the right direction.
>
> > if/when 4.0.1 (trunk) might become the "latest official release"
> - I don't really know. It really depends upon any loose ends (unfinished
> code) being wrapped up, testing and documentation being performed, and a
> hundred little things being aligned to get it to a releasable state. It
> requires a team effort, and getting enough volunteers together with
> substantial overlapping free time is difficult to say the least. Of
> course, a greater number of volunteers helps spread the burden.
>
> Sean
> ________________________________________
> From: Greg Silverman <gm...@umn.edu.INVALID>
> Sent: Tuesday, February 2, 2021 11:09 AM
> To: dev@ctakes.apache.org
> Subject: Re: 4.0.1 build [EXTERNAL]
>
> * External Email - Caution *
>
>
> Hi Sean,
> Yes to both.
>
> Best!
>
> Greg--
>
>
> On Tue, Feb 2, 2021 at 10:06 AM Finan, Sean <
> Sean.Finan@childrens.harvard.edu> wrote:
>
> > Hi Greg,
> >
> > just to clarify, 4.0.1 (trunk) is faster than 4.0.0.1 (4.0.0 Patch) ?
> >
> > Are you asking if/when 4.0.1 (trunk) might become the "latest official
> > release"?
> >
> > Sean
> > ________________________________________
> > From: Greg Silverman <gm...@umn.edu.INVALID>
> > Sent: Tuesday, February 2, 2021 10:51 AM
> > To: dev@ctakes.apache.org
> > Subject: 4.0.1 build [EXTERNAL]
> >
> > * External Email - Caution *
> >
> >
> > Any chance of pushing 4.0.1 into the available prebuilt download? Had to
> > revert from it to 4.0.0.1 after the authentication switch, and have to
> say
> > it is painfully slow in comparison.
> >
> > Thanks for the consideration.
> >
> > Greg--
> >
> > --
> > Greg M. Silverman
> > Senior Systems Developer
> > NLP/IE <
> >
> https://urldefense.proofpoint.com/v2/url?u=https-3A__healthinformatics.umn.edu_research_nlpie-2Dgroup&d=DwIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LF15pjBJqfVeGecrPv1H1tcNxJCNgg1ozXYU9PPTPEM&s=B9hgFneo5bNXdU4DEV-LmL1kNMaGJGhQpHnzJmWhI-s&e=
> > >
> > Department of Surgery
> > University of Minnesota
> > gms@umn.edu
> >
>
>
> --
> Greg M. Silverman
> Senior Systems Developer
> NLP/IE <
> https://urldefense.proofpoint.com/v2/url?u=https-3A__healthinformatics.umn.edu_research_nlpie-2Dgroup&d=DwIFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=JHayxKiMLy3a9QIY99ZppYoVq30OHHyHHNA0PuymcmE&s=2m70jxe9XC8GUwPk6AtihYOtbSdXrt1-3TZxq36P9hc&e=
> >
> Department of Surgery
> University of Minnesota
> gms@umn.edu
>
--
Greg M. Silverman
Senior Systems Developer
NLP/IE <https://healthinformatics.umn.edu/research/nlpie-group>
Department of Surgery
University of Minnesota
gms@umn.edu
Re: 4.0.1 build [EXTERNAL]
Posted by Greg Silverman <gm...@umn.edu.INVALID>.
One other observation is that 4.0.0.1 is much less memory efficient than
4.0.1. I'm annotating the same set of notes I had previously annotated with
4.0.1 and just got a heap space error, which is something we never got with
4.0.1 (both 4.0.0.1 and 4.0.1 were using the default settings).
Greg--
On Tue, Feb 2, 2021 at 10:22 AM Finan, Sean <
Sean.Finan@childrens.harvard.edu> wrote:
> > 4.0.1 (trunk) is faster than 4.0.0.1 (4.0.0 Patch) ?
> - That is good to hear! Well, not that the older is slower, but that the
> newer is heading in the right direction.
>
> > if/when 4.0.1 (trunk) might become the "latest official release"
> - I don't really know. It really depends upon any loose ends (unfinished
> code) being wrapped up, testing and documentation being performed, and a
> hundred little things being aligned to get it to a releasable state. It
> requires a team effort, and getting enough volunteers together with
> substantial overlapping free time is difficult to say the least. Of
> course, a greater number of volunteers helps spread the burden.
>
> Sean
> ________________________________________
> From: Greg Silverman <gm...@umn.edu.INVALID>
> Sent: Tuesday, February 2, 2021 11:09 AM
> To: dev@ctakes.apache.org
> Subject: Re: 4.0.1 build [EXTERNAL]
>
> * External Email - Caution *
>
>
> Hi Sean,
> Yes to both.
>
> Best!
>
> Greg--
>
>
> On Tue, Feb 2, 2021 at 10:06 AM Finan, Sean <
> Sean.Finan@childrens.harvard.edu> wrote:
>
> > Hi Greg,
> >
> > just to clarify, 4.0.1 (trunk) is faster than 4.0.0.1 (4.0.0 Patch) ?
> >
> > Are you asking if/when 4.0.1 (trunk) might become the "latest official
> > release"?
> >
> > Sean
> > ________________________________________
> > From: Greg Silverman <gm...@umn.edu.INVALID>
> > Sent: Tuesday, February 2, 2021 10:51 AM
> > To: dev@ctakes.apache.org
> > Subject: 4.0.1 build [EXTERNAL]
> >
> > * External Email - Caution *
> >
> >
> > Any chance of pushing 4.0.1 into the available prebuilt download? Had to
> > revert from it to 4.0.0.1 after the authentication switch, and have to
> say
> > it is painfully slow in comparison.
> >
> > Thanks for the consideration.
> >
> > Greg--
> >
> > --
> > Greg M. Silverman
> > Senior Systems Developer
> > NLP/IE <
> >
> https://urldefense.proofpoint.com/v2/url?u=https-3A__healthinformatics.umn.edu_research_nlpie-2Dgroup&d=DwIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LF15pjBJqfVeGecrPv1H1tcNxJCNgg1ozXYU9PPTPEM&s=B9hgFneo5bNXdU4DEV-LmL1kNMaGJGhQpHnzJmWhI-s&e=
> > >
> > Department of Surgery
> > University of Minnesota
> > gms@umn.edu
> >
>
>
> --
> Greg M. Silverman
> Senior Systems Developer
> NLP/IE <
> https://urldefense.proofpoint.com/v2/url?u=https-3A__healthinformatics.umn.edu_research_nlpie-2Dgroup&d=DwIFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=JHayxKiMLy3a9QIY99ZppYoVq30OHHyHHNA0PuymcmE&s=2m70jxe9XC8GUwPk6AtihYOtbSdXrt1-3TZxq36P9hc&e=
> >
> Department of Surgery
> University of Minnesota
> gms@umn.edu
>
--
Greg M. Silverman
Senior Systems Developer
NLP/IE <https://healthinformatics.umn.edu/research/nlpie-group>
Department of Surgery
University of Minnesota
gms@umn.edu
Re: 4.0.1 build [EXTERNAL]
Posted by "Finan, Sean" <Se...@childrens.harvard.edu>.
> 4.0.1 (trunk) is faster than 4.0.0.1 (4.0.0 Patch) ?
- That is good to hear! Well, not that the older is slower, but that the newer is heading in the right direction.
> if/when 4.0.1 (trunk) might become the "latest official release"
- I don't really know. It really depends upon any loose ends (unfinished code) being wrapped up, testing and documentation being performed, and a hundred little things being aligned to get it to a releasable state. It requires a team effort, and getting enough volunteers together with substantial overlapping free time is difficult to say the least. Of course, a greater number of volunteers helps spread the burden.
Sean
________________________________________
From: Greg Silverman <gm...@umn.edu.INVALID>
Sent: Tuesday, February 2, 2021 11:09 AM
To: dev@ctakes.apache.org
Subject: Re: 4.0.1 build [EXTERNAL]
* External Email - Caution *
Hi Sean,
Yes to both.
Best!
Greg--
On Tue, Feb 2, 2021 at 10:06 AM Finan, Sean <
Sean.Finan@childrens.harvard.edu> wrote:
> Hi Greg,
>
> just to clarify, 4.0.1 (trunk) is faster than 4.0.0.1 (4.0.0 Patch) ?
>
> Are you asking if/when 4.0.1 (trunk) might become the "latest official
> release"?
>
> Sean
> ________________________________________
> From: Greg Silverman <gm...@umn.edu.INVALID>
> Sent: Tuesday, February 2, 2021 10:51 AM
> To: dev@ctakes.apache.org
> Subject: 4.0.1 build [EXTERNAL]
>
> * External Email - Caution *
>
>
> Any chance of pushing 4.0.1 into the available prebuilt download? Had to
> revert from it to 4.0.0.1 after the authentication switch, and have to say
> it is painfully slow in comparison.
>
> Thanks for the consideration.
>
> Greg--
>
> --
> Greg M. Silverman
> Senior Systems Developer
> NLP/IE <
> https://urldefense.proofpoint.com/v2/url?u=https-3A__healthinformatics.umn.edu_research_nlpie-2Dgroup&d=DwIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LF15pjBJqfVeGecrPv1H1tcNxJCNgg1ozXYU9PPTPEM&s=B9hgFneo5bNXdU4DEV-LmL1kNMaGJGhQpHnzJmWhI-s&e=
> >
> Department of Surgery
> University of Minnesota
> gms@umn.edu
>
--
Greg M. Silverman
Senior Systems Developer
NLP/IE <https://urldefense.proofpoint.com/v2/url?u=https-3A__healthinformatics.umn.edu_research_nlpie-2Dgroup&d=DwIFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=JHayxKiMLy3a9QIY99ZppYoVq30OHHyHHNA0PuymcmE&s=2m70jxe9XC8GUwPk6AtihYOtbSdXrt1-3TZxq36P9hc&e= >
Department of Surgery
University of Minnesota
gms@umn.edu
Re: 4.0.1 build [EXTERNAL]
Posted by Greg Silverman <gm...@umn.edu.INVALID>.
Hi Sean,
Yes to both.
Best!
Greg--
On Tue, Feb 2, 2021 at 10:06 AM Finan, Sean <
Sean.Finan@childrens.harvard.edu> wrote:
> Hi Greg,
>
> just to clarify, 4.0.1 (trunk) is faster than 4.0.0.1 (4.0.0 Patch) ?
>
> Are you asking if/when 4.0.1 (trunk) might become the "latest official
> release"?
>
> Sean
> ________________________________________
> From: Greg Silverman <gm...@umn.edu.INVALID>
> Sent: Tuesday, February 2, 2021 10:51 AM
> To: dev@ctakes.apache.org
> Subject: 4.0.1 build [EXTERNAL]
>
> * External Email - Caution *
>
>
> Any chance of pushing 4.0.1 into the available prebuilt download? Had to
> revert from it to 4.0.0.1 after the authentication switch, and have to say
> it is painfully slow in comparison.
>
> Thanks for the consideration.
>
> Greg--
>
> --
> Greg M. Silverman
> Senior Systems Developer
> NLP/IE <
> https://urldefense.proofpoint.com/v2/url?u=https-3A__healthinformatics.umn.edu_research_nlpie-2Dgroup&d=DwIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LF15pjBJqfVeGecrPv1H1tcNxJCNgg1ozXYU9PPTPEM&s=B9hgFneo5bNXdU4DEV-LmL1kNMaGJGhQpHnzJmWhI-s&e=
> >
> Department of Surgery
> University of Minnesota
> gms@umn.edu
>
--
Greg M. Silverman
Senior Systems Developer
NLP/IE <https://healthinformatics.umn.edu/research/nlpie-group>
Department of Surgery
University of Minnesota
gms@umn.edu
Re: 4.0.1 build [EXTERNAL]
Posted by "Finan, Sean" <Se...@childrens.harvard.edu>.
Hi Greg,
just to clarify, 4.0.1 (trunk) is faster than 4.0.0.1 (4.0.0 Patch) ?
Are you asking if/when 4.0.1 (trunk) might become the "latest official release"?
Sean
________________________________________
From: Greg Silverman <gm...@umn.edu.INVALID>
Sent: Tuesday, February 2, 2021 10:51 AM
To: dev@ctakes.apache.org
Subject: 4.0.1 build [EXTERNAL]
* External Email - Caution *
Any chance of pushing 4.0.1 into the available prebuilt download? Had to
revert from it to 4.0.0.1 after the authentication switch, and have to say
it is painfully slow in comparison.
Thanks for the consideration.
Greg--
--
Greg M. Silverman
Senior Systems Developer
NLP/IE <https://urldefense.proofpoint.com/v2/url?u=https-3A__healthinformatics.umn.edu_research_nlpie-2Dgroup&d=DwIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LF15pjBJqfVeGecrPv1H1tcNxJCNgg1ozXYU9PPTPEM&s=B9hgFneo5bNXdU4DEV-LmL1kNMaGJGhQpHnzJmWhI-s&e= >
Department of Surgery
University of Minnesota
gms@umn.edu