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Posted to commits@uima.apache.org by sc...@apache.org on 2006/12/05 21:39:52 UTC

svn commit: r482771 [8/9] - in /incubator/uima/uimaj/trunk/uima-docbooks: ./ src/docbook/ src/docbook/overview_and_setup/ src/docbook/references/ src/docbook/references/images/ref.cas/ src/docbook/references/images/ref.pear/ src/docbook/references/imag...

Modified: incubator/uima/uimaj/trunk/uima-docbooks/src/olink/tools/pdf-target.db
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uima-docbooks/src/olink/tools/pdf-target.db?view=diff&rev=482771&r1=482770&r2=482771
==============================================================================
--- incubator/uima/uimaj/trunk/uima-docbooks/src/olink/tools/pdf-target.db (original)
+++ incubator/uima/uimaj/trunk/uima-docbooks/src/olink/tools/pdf-target.db Tue Dec  5 12:39:49 2006
@@ -1,517 +1,297 @@
 <div element="book" href="#d0e2" number="" lang="en">
-   <ttl>Overview &amp; Setup</ttl>
-   <xreftext>Overview &amp; Setup</xreftext>
-   <div element="chapter" href="#ugr.project_overview" number="1" targetptr="ugr.project_overview">
-      <ttl>Apache UIMA Project Overview</ttl>
-      <xreftext>Chapter 1, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" font-style="italic">Apache UIMA Project Overview</fo:inline>
+   <ttl>Apache UIMA SDK Tools Guide and Reference</ttl>
+   <xreftext>Apache UIMA SDK Tools Guide and Reference</xreftext>
+   <div element="chapter" href="#ugr.tools.cde" number="1" targetptr="ugr.tools.cde">
+      <ttl>Component Descriptor Editor User's Guide</ttl>
+      <xreftext>Chapter 1, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" font-style="italic">Component Descriptor Editor User's Guide</fo:inline>
       </xreftext>
-      <div element="section" href="#ugr.project_overview_doc_overview" number="1.1" targetptr="ugr.project_overview_doc_overview">
-         <ttl>Apache UIMA Project Documentation Overview</ttl>
-         <xreftext>Section 1.1, “Apache UIMA Project Documentation Overview”</xreftext>
-         <div element="section" href="#ugr.project_overview_overview" number="1.1.1" targetptr="ugr.project_overview_overview">
-            <ttl>Overviews</ttl>
-            <xreftext>Section 1.1.1, “Overviews”</xreftext>
-         </div>
-         <div element="section" href="#ugr.project_overview_setup" number="1.1.2" targetptr="ugr.project_overview_setup">
-            <ttl>Eclipse Tooling Installation and Setup</ttl>
-            <xreftext>Section 1.1.2, “Eclipse Tooling Installation and Setup”</xreftext>
-         </div>
-         <div element="section" href="#ugr.project_overview_tutorials_dev_guides" number="1.1.3" targetptr="ugr.project_overview_tutorials_dev_guides">
-            <ttl>Tutorials and Developer's Guides</ttl>
-            <xreftext>Section 1.1.3, “Tutorials and Developer's Guides”</xreftext>
-            <obj element="row" href="#ugr.project_overview_tutorial_annotator" number="" targetptr="ugr.project_overview_tutorial_annotator">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_tutorial_cpe" number="" targetptr="ugr.project_overview_tutorial_cpe">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_tutorial_application_development" number="" targetptr="ugr.project_overview_tutorial_application_development">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_guide_flow_controller" number="" targetptr="ugr.project_overview_guide_flow_controller">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_guide_multiple_sofas" number="" targetptr="ugr.project_overview_guide_multiple_sofas">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_guide_cas_multiplier" number="" targetptr="ugr.project_overview_guide_cas_multiplier">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_xmi_emf" number="" targetptr="ugr.project_overview_xmi_emf">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
+      <div element="section" href="#ugr.tools.cde.launching" number="1.1" targetptr="ugr.tools.cde.launching">
+         <ttl>Launching the Component Descriptor Editor</ttl>
+         <xreftext>Section 1.1, “Launching the Component Descriptor Editor”</xreftext>
+      </div>
+      <div element="section" href="#ugr.tools.cde.creating_new_ae_descriptor" number="1.2" targetptr="ugr.tools.cde.creating_new_ae_descriptor">
+         <ttl>Creating a New AE Descriptor</ttl>
+         <xreftext>Section 1.2, “Creating a New AE Descriptor”</xreftext>
+      </div>
+      <div element="section" href="#ugr.tools.cde.pages_within_the_editor" number="1.3" targetptr="ugr.tools.cde.pages_within_the_editor">
+         <ttl>Pages within the Editor</ttl>
+         <xreftext>Section 1.3, “Pages within the Editor”</xreftext>
+         <div element="section" href="#ugr.tools.cde.adjusting_display_of_pages" number="1.3.1" targetptr="ugr.tools.cde.adjusting_display_of_pages">
+            <ttl>Adjusting the display of pages</ttl>
+            <xreftext>Section 1.3.1, “Adjusting the display of pages”</xreftext>
          </div>
-         <div element="section" href="#ugr.project_overview_tool_guides" number="1.1.4" targetptr="ugr.project_overview_tool_guides">
-            <ttl>Tools Users' Guides</ttl>
-            <xreftext>Section 1.1.4, “Tools Users' Guides”</xreftext>
-            <obj element="row" href="#ugr.project_overview_tools_component_descriptor_editor" number="" targetptr="ugr.project_overview_tools_component_descriptor_editor">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_tools_cpe_configurator" number="" targetptr="ugr.project_overview_tools_cpe_configurator">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_tools_pear_packager" number="" targetptr="ugr.project_overview_tools_pear_packager">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_tools_pear_installer" number="" targetptr="ugr.project_overview_tools_pear_installer">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_tools_pear_merger" number="" targetptr="ugr.project_overview_tools_pear_merger">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_tools_document_analyzer" number="" targetptr="ugr.project_overview_tools_document_analyzer">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_tools_cas_visual_debugger" number="" targetptr="ugr.project_overview_tools_cas_visual_debugger">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_tools_jcasgen" number="" targetptr="ugr.project_overview_tools_jcasgen">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_tools_xml_cas_viewer" number="" targetptr="ugr.project_overview_tools_xml_cas_viewer">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
+      </div>
+      <div element="section" href="#ugr.tools.cde.overview_page" number="1.4" targetptr="ugr.tools.cde.overview_page">
+         <ttl>Overview Page</ttl>
+         <xreftext>Section 1.4, “Overview Page”</xreftext>
+         <div element="section" href="#ugr.tools.cde.overview_page.implementation_details" number="1.4.1" targetptr="ugr.tools.cde.overview_page.implementation_details">
+            <ttl>Implementation Details</ttl>
+            <xreftext>Section 1.4.1, “Implementation Details”</xreftext>
          </div>
-         <div element="section" href="#ugr.project_overview_reference" number="1.1.5" targetptr="ugr.project_overview_reference">
-            <ttl>References</ttl>
-            <xreftext>Section 1.1.5, “References”</xreftext>
-            <obj element="row" href="#ugr.project_overview_xml_ref_component_descriptor" number="" targetptr="ugr.project_overview_xml_ref_component_descriptor">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_xml_ref_collection_processing_engine_descriptor" number="" targetptr="ugr.project_overview_xml_ref_collection_processing_engine_descriptor">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_javadocs" number="" targetptr="ugr.project_overview_javadocs">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_cas" number="" targetptr="ugr.project_overview_cas">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_jcas" number="" targetptr="ugr.project_overview_jcas">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_ref_pear" number="" targetptr="ugr.project_overview_ref_pear">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
-            <obj element="row" href="#ugr.project_overview_xmi_cas_serialization" number="" targetptr="ugr.project_overview_xmi_cas_serialization">
-               <ttl>???TITLE???</ttl>
-               <xreftext/>
-            </obj>
+         <div element="section" href="#ugr.tools.cde.overview_page.runtime_info" number="1.4.2" targetptr="ugr.tools.cde.overview_page.runtime_info">
+            <ttl>Runtime Information</ttl>
+            <xreftext>Section 1.4.2, “Runtime Information”</xreftext>
          </div>
-      </div>
-      <div element="section" href="#ugr.project_overview_doc_use" number="1.2" targetptr="ugr.project_overview_doc_use">
-         <ttl>Using the Documentation to get started with the UIMA SDK</ttl>
-         <xreftext>Section 1.2, “Using the Documentation to get started with the UIMA SDK”</xreftext>
-      </div>
-      <div element="section" href="#ugr.project_overview_whats_new" number="1.3" targetptr="ugr.project_overview_whats_new">
-         <ttl>What's new in Apache UIMA Version 2.0</ttl>
-         <xreftext>Section 1.3, “What's new in Apache UIMA Version 2.0”</xreftext>
-         <div element="section" href="#ugr.project_overview_new_capabilities" number="1.3.1" targetptr="ugr.project_overview_new_capabilities">
-            <ttl>New Capabilities</ttl>
-            <xreftext>Section 1.3.1, “New Capabilities”</xreftext>
-            <div element="section" href="#ugr.project_overview_new_data_types" number="1.3.1.1" targetptr="ugr.project_overview_new_data_types">
-               <ttl>New Primitive data types</ttl>
-               <xreftext>Section 1.3.1.1, “New Primitive data types”</xreftext>
-            </div>
-            <div element="section" href="#d0e444" number="1.3.1.2">
-               <ttl>Simpler Analysis Engines and CASes</ttl>
-               <xreftext>Section 1.3.1.2, “Simpler Analysis Engines and CASes”</xreftext>
-            </div>
-            <div element="section" href="#d0e451" number="1.3.1.3">
-               <ttl>Sofas and CAS Views simplified</ttl>
-               <xreftext>Section 1.3.1.3, “Sofas and CAS Views simplified”</xreftext>
-            </div>
-            <div element="section" href="#d0e456" number="1.3.1.4">
-               <ttl>Analysis Component generalized to support multiple new CAS
-          outputs</ttl>
-               <xreftext>Section 1.3.1.4, “Analysis Component generalized to support multiple new CAS
-          outputs”</xreftext>
-            </div>
-            <div element="section" href="#d0e463" number="1.3.1.5">
-               <ttl>User-customized Flow Controllers</ttl>
-               <xreftext>Section 1.3.1.5, “User-customized Flow Controllers”</xreftext>
-            </div>
-            <div element="section" href="#d0e470" number="1.3.1.6">
-               <ttl>Search Engine</ttl>
-               <xreftext>Section 1.3.1.6, “Search Engine”</xreftext>
-            </div>
+         <div element="section" href="#ugr.tools.cde.overview_page.overall_id_info" number="1.4.3" targetptr="ugr.tools.cde.overview_page.overall_id_info">
+            <ttl>Overall Identification Information</ttl>
+            <xreftext>Section 1.4.3, “Overall Identification Information”</xreftext>
          </div>
-         <div element="section" href="#ugr.project_overview_backwards_compatibility" number="1.3.2" targetptr="ugr.project_overview_backwards_compatibility">
-            <ttl>Backwards Compatibility</ttl>
-            <xreftext>Section 1.3.2, “Backwards Compatibility”</xreftext>
-         </div>
-         <div element="section" href="#d0e501" number="1.3.3">
-            <ttl>Other Changes</ttl>
-            <xreftext>Section 1.3.3, “Other Changes”</xreftext>
-         </div>
-      </div>
-      <div element="section" href="#ugr.project_overview_summary" number="1.4" targetptr="ugr.project_overview_summary">
-         <ttl>Apache UIMA SDK Summary</ttl>
-         <xreftext>Section 1.4, “Apache UIMA SDK Summary”</xreftext>
-         <div element="section" href="#d0e513" number="1.4.1">
-            <ttl>General</ttl>
-            <xreftext>Section 1.4.1, “General”</xreftext>
-         </div>
-         <div element="section" href="#d0e522" number="1.4.2">
-            <ttl>Programming Language Support</ttl>
-            <xreftext>Section 1.4.2, “Programming Language Support”</xreftext>
-         </div>
-         <div element="section" href="#d0e533" number="1.4.3">
-            <ttl>Multi-Modal Support</ttl>
-            <xreftext>Section 1.4.3, “Multi-Modal Support”</xreftext>
-         </div>
-         <div element="section" href="#d0e540" number="1.4.4">
-            <ttl>Semantic Search Components</ttl>
-            <xreftext>Section 1.4.4, “Semantic Search Components”</xreftext>
-         </div>
-      </div>
-      <div element="section" href="#ugr.project_overview_summary_sdk_capabilities" number="1.5" targetptr="ugr.project_overview_summary_sdk_capabilities">
-         <ttl>Summary of UIMA SDK Capabilities</ttl>
-         <xreftext>Section 1.5, “Summary of UIMA SDK Capabilities”</xreftext>
       </div>
-   </div>
-   <div element="chapter" href="#ugr.conceptual_overview" number="2" targetptr="ugr.conceptual_overview">
-      <ttl>UIMA Conceptual Overview</ttl>
-      <xreftext>Chapter 2, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" font-style="italic">UIMA Conceptual Overview</fo:inline>
-      </xreftext>
-      <div element="section" href="#ugr.conceptual_overview.uima_introduction" number="2.1" targetptr="ugr.conceptual_overview.uima_introduction">
-         <ttl>UIMA Introduction</ttl>
-         <xreftext>Section 2.1, “UIMA Introduction”</xreftext>
-         <obj element="figure" href="#d0e734" number="2.1">
-            <ttl>UIMA helps you build the bridge between the unstructured and structured
-        worlds</ttl>
-            <xreftext>Figure 2.1, “UIMA helps you build the bridge between the unstructured and structured
-        worlds”</xreftext>
-         </obj>
-      </div>
-      <div element="section" href="#ugr.conceptual_overview_architecture_framework_sdk" number="2.2" targetptr="ugr.conceptual_overview_architecture_framework_sdk">
-         <ttl>The Architecture, the Framework and the SDK</ttl>
-         <xreftext>Section 2.2, “The Architecture, the Framework and the SDK”</xreftext>
-      </div>
-      <div element="section" href="#ugr.conceptual_overview.analysis_basics" number="2.3" targetptr="ugr.conceptual_overview.analysis_basics">
-         <ttl>Analysis Basics</ttl>
-         <xreftext>Section 2.3, “Analysis Basics”</xreftext>
-         <div element="section" href="#d0e805" number="2.3.1">
-            <ttl>Analysis Engines, Annotators and Analysis Results</ttl>
-            <xreftext>Section 2.3.1, “Analysis Engines, Annotators and Analysis Results”</xreftext>
-            <obj element="figure" href="#ugr.conceptual_overview.metadata_in_cas" number="2.2" targetptr="ugr.conceptual_overview.metadata_in_cas">
-               <ttl>Objects represented in the Common Analysis Structure (CAS)</ttl>
-               <xreftext>Figure 2.2, “Objects represented in the Common Analysis Structure (CAS)”</xreftext>
-            </obj>
+      <div element="section" href="#ugr.tools.cde.aggregate_page" number="1.5" targetptr="ugr.tools.cde.aggregate_page">
+         <ttl>Aggregate Page</ttl>
+         <xreftext>Section 1.5, “Aggregate Page”</xreftext>
+         <div element="section" href="#ugr.tools.cde.aggregate_page.adding_components_more_than_once" number="1.5.1" targetptr="ugr.tools.cde.aggregate_page.adding_components_more_than_once">
+            <ttl>Adding components more than once</ttl>
+            <xreftext>Section 1.5.1, “Adding components more than once”</xreftext>
          </div>
-         <div element="section" href="#d0e879" number="2.3.2">
-            <ttl>Representing Analysis Results in the CAS</ttl>
-            <xreftext>Section 2.3.2, “Representing Analysis Results in the CAS”</xreftext>
-            <div element="section" href="#d0e944" number="2.3.2.1">
-               <ttl>The Annotation Type</ttl>
-               <xreftext>Section 2.3.2.1, “The Annotation Type”</xreftext>
-            </div>
-            <div element="section" href="#d0e973" number="2.3.2.2">
-               <ttl>Not Just Annotations</ttl>
-               <xreftext>Section 2.3.2.2, “Not Just Annotations”</xreftext>
-            </div>
-            <div element="section" href="#d0e1007" number="2.3.2.3">
-               <ttl>Multiple Views within a CAS</ttl>
-               <xreftext>Section 2.3.2.3, “Multiple Views within a CAS”</xreftext>
-            </div>
+         <div element="section" href="#ugr.tools.cde.aggregate_page.adding_removing_components_from_flow" number="1.5.2" targetptr="ugr.tools.cde.aggregate_page.adding_removing_components_from_flow">
+            <ttl>Adding or Removing components in a flow</ttl>
+            <xreftext>Section 1.5.2, “Adding or Removing components in a flow”</xreftext>
          </div>
-         <div element="section" href="#d0e1023" number="2.3.3">
-            <ttl>Interacting with the CAS and External Resources</ttl>
-            <xreftext>Section 2.3.3, “Interacting with the CAS and External Resources”</xreftext>
-         </div>
-         <div element="section" href="#d0e1043" number="2.3.4">
-            <ttl>Component Descriptors</ttl>
-            <xreftext>Section 2.3.4, “Component Descriptors”</xreftext>
+         <div element="section" href="#ugr.tools.cde.aggregate_page.adding_remote_aes" number="1.5.3" targetptr="ugr.tools.cde.aggregate_page.adding_remote_aes">
+            <ttl>Adding remote Analysis Engines</ttl>
+            <xreftext>Section 1.5.3, “Adding remote Analysis Engines”</xreftext>
+         </div>
+         <div element="section" href="#ugr.tools.cde.aggregate_page.connecting_to_remote_services" number="1.5.4" targetptr="ugr.tools.cde.aggregate_page.connecting_to_remote_services">
+            <ttl>Connecting to Remote Services</ttl>
+            <xreftext>Section 1.5.4, “Connecting to Remote Services”</xreftext>
+         </div>
+         <div element="section" href="#ugr.tools.cde.aggregate_page.finding_aes_by_searching" number="1.5.5" targetptr="ugr.tools.cde.aggregate_page.finding_aes_by_searching">
+            <ttl>Finding Analysis Engines by searching</ttl>
+            <xreftext>Section 1.5.5, “Finding Analysis Engines by searching”</xreftext>
+         </div>
+         <div element="section" href="#ugr.tools.cde.aggregate_page.component_engine_flow" number="1.5.6" targetptr="ugr.tools.cde.aggregate_page.component_engine_flow">
+            <ttl>Component Engine Flow</ttl>
+            <xreftext>Section 1.5.6, “Component Engine Flow”</xreftext>
          </div>
       </div>
-      <div element="section" href="#ugr.conceptual_overview.aggregate_analysis_engines" number="2.4" targetptr="ugr.conceptual_overview.aggregate_analysis_engines">
-         <ttl>Aggregate Analysis Engines</ttl>
-         <xreftext>Section 2.4, “Aggregate Analysis Engines”</xreftext>
-         <obj element="figure" href="#ugr.conceptual_overview.sample_aggregate" number="2.3" targetptr="ugr.conceptual_overview.sample_aggregate">
-            <ttl>Sample Aggregate Analysis Engine</ttl>
-            <xreftext>Figure 2.3, “Sample Aggregate Analysis Engine”</xreftext>
-         </obj>
-      </div>
-      <div element="section" href="#d0e1143" number="2.5">
-         <ttl>Application Building and Collection Processing</ttl>
-         <xreftext>Section 2.5, “Application Building and Collection Processing”</xreftext>
-         <div element="section" href="#d0e1151" number="2.5.1">
-            <ttl>Using the framework from an Application</ttl>
-            <xreftext>Section 2.5.1, “Using the framework from an Application”</xreftext>
-            <obj element="figure" href="#ugr.conceptual_overview.application_factory_ae" number="2.4" targetptr="ugr.conceptual_overview.application_factory_ae">
-               <ttl>Using UIMA Framework to create and interact with an Analysis Engine</ttl>
-               <xreftext>Figure 2.4, “Using UIMA Framework to create and interact with an Analysis Engine”</xreftext>
-            </obj>
+      <div element="section" href="#ugr.tools.cde.parm_definition" number="1.6" targetptr="ugr.tools.cde.parm_definition">
+         <ttl>Parameters Definition Page</ttl>
+         <xreftext>Section 1.6, “Parameters Definition Page”</xreftext>
+         <div element="section" href="#ugr.tools.cde.parm_definition.using_groups" number="1.6.1" targetptr="ugr.tools.cde.parm_definition.using_groups">
+            <ttl>Using groups</ttl>
+            <xreftext>Section 1.6.1, “Using groups”</xreftext>
          </div>
-         <div element="section" href="#d0e1182" number="2.5.2">
-            <ttl>Graduating to Collection Processing</ttl>
-            <xreftext>Section 2.5.2, “Graduating to Collection Processing”</xreftext>
-            <obj element="figure" href="#ugr.conceptual_overview.fig.cpe" number="2.5" targetptr="ugr.conceptual_overview.fig.cpe">
-               <ttl>High-Level UIMA Component Architecture from Source to Sink</ttl>
-               <xreftext>Figure 2.5, “High-Level UIMA Component Architecture from Source to Sink”</xreftext>
-            </obj>
-            <obj element="figure" href="#ugr.conceptual_overview.fig.cpm" number="2.6" targetptr="ugr.conceptual_overview.fig.cpm">
-               <ttl>Collection Processing Manager in UIMA Framework</ttl>
-               <xreftext>Figure 2.6, “Collection Processing Manager in UIMA Framework”</xreftext>
+         <div element="section" href="#ugr.tools.cde.parm_definition.aggregates" number="1.6.2" targetptr="ugr.tools.cde.parm_definition.aggregates">
+            <ttl>Parameter declarations for Aggregates</ttl>
+            <xreftext>Section 1.6.2, “Parameter declarations for Aggregates”</xreftext>
+            <obj element="phrase" href="#ugr.tools.cde.parm_definition.removing_groups" number="" targetptr="ugr.tools.cde.parm_definition.removing_groups">
+               <ttl>???TITLE???</ttl>
+               <xreftext/>
             </obj>
          </div>
       </div>
-      <div element="section" href="#d0e1285" number="2.6">
-         <ttl>Exploiting Analysis Results</ttl>
-         <xreftext>Section 2.6, “Exploiting Analysis Results”</xreftext>
-         <div element="section" href="#d0e1293" number="2.6.1">
-            <ttl>Semantic Search</ttl>
-            <xreftext>Section 2.6.1, “Semantic Search”</xreftext>
-         </div>
-         <div element="section" href="#d0e1351" number="2.6.2">
-            <ttl>Databases</ttl>
-            <xreftext>Section 2.6.2, “Databases”</xreftext>
-         </div>
-      </div>
-      <div element="section" href="#d0e1356" number="2.7">
-         <ttl>Multimodal Processing in UIMA</ttl>
-         <xreftext>Section 2.7, “Multimodal Processing in UIMA”</xreftext>
-         <obj element="figure" href="#ugr.conceptual_overview.fig.multiple_sofas" number="2.7" targetptr="ugr.conceptual_overview.fig.multiple_sofas">
-            <ttl>Multiple Sofas in support of multi-modal analysis of an audio Stream. Some
-        engines work on the audio “view”, some on the text
-        “view” and some on both.</ttl>
-            <xreftext>Figure 2.7, “Multiple Sofas in support of multi-modal analysis of an audio Stream. Some
-        engines work on the audio “view”, some on the text
-        “view” and some on both.”</xreftext>
+      <div element="section" href="#ugr.tools.cde.parameter_settings" number="1.7" targetptr="ugr.tools.cde.parameter_settings">
+         <ttl>Parameter Settings Page</ttl>
+         <xreftext>Section 1.7, “Parameter Settings Page”</xreftext>
+      </div>
+      <div element="section" href="#ugr.tools.cde.type_system" number="1.8" targetptr="ugr.tools.cde.type_system">
+         <ttl>Type System Page</ttl>
+         <xreftext>Section 1.8, “Type System Page”</xreftext>
+         <obj element="para" href="#ugr.tools.cde.auto_jcasgen" number="" targetptr="ugr.tools.cde.auto_jcasgen">
+            <ttl>???TITLE???</ttl>
+            <xreftext>Section 1.8, “Type System Page”</xreftext>
          </obj>
+         <div element="section" href="#ugr.tools.cde.type_system.exporting" number="1.8.1" targetptr="ugr.tools.cde.type_system.exporting">
+            <ttl>Exporting</ttl>
+            <xreftext>Section 1.8.1, “Exporting”</xreftext>
+         </div>
+      </div>
+      <div element="section" href="#ugr.tools.cde.capabilities" number="1.9" targetptr="ugr.tools.cde.capabilities">
+         <ttl>Capabilities Page</ttl>
+         <xreftext>Section 1.9, “Capabilities Page”</xreftext>
+         <div element="section" href="#ugr.tools.cde.capabilities.sofa_name_mapping" number="1.9.1" targetptr="ugr.tools.cde.capabilities.sofa_name_mapping">
+            <ttl>Sofa (and view) name mappings</ttl>
+            <xreftext>Section 1.9.1, “Sofa (and view) name mappings”</xreftext>
+         </div>
+      </div>
+      <div element="section" href="#ugr.tools.cde.indexes" number="1.10" targetptr="ugr.tools.cde.indexes">
+         <ttl>Indexes Page</ttl>
+         <xreftext>Section 1.10, “Indexes Page”</xreftext>
+      </div>
+      <div element="section" href="#ugr.tools.cde.resources" number="1.11" targetptr="ugr.tools.cde.resources">
+         <ttl>Resources Page</ttl>
+         <xreftext>Section 1.11, “Resources Page”</xreftext>
+         <div element="section" href="#ugr.tools.cde.resources.binding" number="1.11.1" targetptr="ugr.tools.cde.resources.binding">
+            <ttl>Binding</ttl>
+            <xreftext>Section 1.11.1, “Binding”</xreftext>
+         </div>
+         <div element="section" href="#ugr.tools.cde.resources.aggregates" number="1.11.2" targetptr="ugr.tools.cde.resources.aggregates">
+            <ttl>Resources with Aggregates</ttl>
+            <xreftext>Section 1.11.2, “Resources with Aggregates”</xreftext>
+         </div>
+         <div element="section" href="#ugr.tools.cde.resources.imports_exports" number="1.11.3" targetptr="ugr.tools.cde.resources.imports_exports">
+            <ttl>Imports and Exports</ttl>
+            <xreftext>Section 1.11.3, “Imports and Exports”</xreftext>
+         </div>
+      </div>
+      <div element="section" href="#ugr.tools.cde.source" number="1.12" targetptr="ugr.tools.cde.source">
+         <ttl>Source Page</ttl>
+         <xreftext>Section 1.12, “Source Page”</xreftext>
+         <div element="section" href="#ugr.tools.cde.source.formatting" number="1.12.1" targetptr="ugr.tools.cde.source.formatting">
+            <ttl>Source formatting – indentation</ttl>
+            <xreftext>Section 1.12.1, “Source formatting – indentation”</xreftext>
+         </div>
+      </div>
+      <div element="section" href="#ugr.tools.cde.creating_self_contained_type_system" number="1.13" targetptr="ugr.tools.cde.creating_self_contained_type_system">
+         <ttl>Creating a Self-Contained Type System</ttl>
+         <xreftext>Section 1.13, “Creating a Self-Contained Type System”</xreftext>
+      </div>
+      <div element="section" href="#ugr.tools.cde.creating_other_descriptor_components" number="1.14" targetptr="ugr.tools.cde.creating_other_descriptor_components">
+         <ttl>Creating Other Descriptor Components</ttl>
+         <xreftext>Section 1.14, “Creating Other Descriptor Components”</xreftext>
+      </div>
+   </div>
+   <div element="chapter" href="#ugr.tools.cpe" number="2" targetptr="ugr.tools.cpe">
+      <ttl>Collection Processing Engine Configurator User's Guide</ttl>
+      <xreftext>Chapter 2, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" font-style="italic">Collection Processing Engine Configurator User's Guide</fo:inline>
+      </xreftext>
+      <div element="section" href="#ugr.tools.cpe.limitations" number="2.1" targetptr="ugr.tools.cpe.limitations">
+         <ttl>Limitations of the CPE Configurator</ttl>
+         <xreftext>Section 2.1, “Limitations of the CPE Configurator”</xreftext>
+      </div>
+      <div element="section" href="#ugr.tools.cpe.starting" number="2.2" targetptr="ugr.tools.cpe.starting">
+         <ttl>Starting the CPE Configurator</ttl>
+         <xreftext>Section 2.2, “Starting the CPE Configurator”</xreftext>
+      </div>
+      <div element="section" href="#ugr.tools.cpe.selecting_component_descriptors" number="2.3" targetptr="ugr.tools.cpe.selecting_component_descriptors">
+         <ttl>Selecting Component Descriptors</ttl>
+         <xreftext>Section 2.3, “Selecting Component Descriptors”</xreftext>
+      </div>
+      <div element="section" href="#ugr.tools.cpe.running" number="2.4" targetptr="ugr.tools.cpe.running">
+         <ttl>Running a Collection Processing Engine</ttl>
+         <xreftext>Section 2.4, “Running a Collection Processing Engine”</xreftext>
+      </div>
+      <div element="section" href="#ugr.tools.cpe.file_menu" number="2.5" targetptr="ugr.tools.cpe.file_menu">
+         <ttl>The File Menu</ttl>
+         <xreftext>Section 2.5, “The File Menu”</xreftext>
+      </div>
+      <div element="section" href="#ugr.tools.cpe.help_menu" number="2.6" targetptr="ugr.tools.cpe.help_menu">
+         <ttl>The Help Menu</ttl>
+         <xreftext>Section 2.6, “The Help Menu”</xreftext>
+      </div>
+   </div>
+   <div element="chapter" href="#ugr.tools.doc_analyzer" number="3" targetptr="ugr.tools.doc_analyzer">
+      <ttl>Document Analyzer User's Guide</ttl>
+      <xreftext>Chapter 3, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" font-style="italic">Document Analyzer User's Guide</fo:inline>
+      </xreftext>
+      <div element="section" href="#ugr.tools.doc_analyzer.starting" number="3.1" targetptr="ugr.tools.doc_analyzer.starting">
+         <ttl>Starting the Document Analyzer</ttl>
+         <xreftext>Section 3.1, “Starting the Document Analyzer”</xreftext>
+      </div>
+      <div element="section" href="#ugr.tools.doc_analyzer.running_an_ae" number="3.2" targetptr="ugr.tools.doc_analyzer.running_an_ae">
+         <ttl>Running an AE</ttl>
+         <xreftext>Section 3.2, “Running an AE”</xreftext>
+      </div>
+      <div element="section" href="#ugr.tools.doc_analyzer.viewing_results" number="3.3" targetptr="ugr.tools.doc_analyzer.viewing_results">
+         <ttl>Viewing the Analysis Results</ttl>
+         <xreftext>Section 3.3, “Viewing the Analysis Results”</xreftext>
+      </div>
+      <div element="section" href="#ugr.tools.doc_analyzer.configuring" number="3.4" targetptr="ugr.tools.doc_analyzer.configuring">
+         <ttl>Configuring the Annotation Viewer</ttl>
+         <xreftext>Section 3.4, “Configuring the Annotation Viewer”</xreftext>
+      </div>
+      <div element="section" href="#ugr.tools.doc_analyzer.interactive_mode" number="3.5" targetptr="ugr.tools.doc_analyzer.interactive_mode">
+         <ttl>Interactive Mode</ttl>
+         <xreftext>Section 3.5, “Interactive Mode”</xreftext>
+      </div>
+      <div element="section" href="#ugr.tools.doc_analyzer.view_mode" number="3.6" targetptr="ugr.tools.doc_analyzer.view_mode">
+         <ttl>View Mode</ttl>
+         <xreftext>Section 3.6, “View Mode”</xreftext>
       </div>
-      <div element="section" href="#d0e1411" number="2.8">
-         <ttl>Next Steps</ttl>
-         <xreftext>Section 2.8, “Next Steps”</xreftext>
+   </div>
+   <div element="chapter" href="#ugr.tools.annotation_viewer" number="4" targetptr="ugr.tools.annotation_viewer">
+      <ttl>Annotation Viewer</ttl>
+      <xreftext>Chapter 4, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" font-style="italic">Annotation Viewer</fo:inline>
+      </xreftext>
+   </div>
+   <div element="chapter" href="#ugr.tools.cvd" number="5" targetptr="ugr.tools.cvd">
+      <ttl>CAS Visual Debugger</ttl>
+      <xreftext>Chapter 5, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" font-style="italic">CAS Visual Debugger</fo:inline>
+      </xreftext>
+   </div>
+   <div element="chapter" href="#ugr.tools.jcasgen" number="6" targetptr="ugr.tools.jcasgen">
+      <ttl>JCasGen User Guide</ttl>
+      <xreftext>Chapter 6, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" font-style="italic">JCasGen User Guide</fo:inline>
+      </xreftext>
+      <div element="section" href="#ugr.tools.jcasgen.running_without_eclipse" number="6.1" targetptr="ugr.tools.jcasgen.running_without_eclipse">
+         <ttl>Running stand-alone without Eclipse</ttl>
+         <xreftext>Section 6.1, “Running stand-alone without Eclipse”</xreftext>
+      </div>
+      <div element="section" href="#ugr.tools.jcasgen.running_standalone_with_eclipse" number="6.2" targetptr="ugr.tools.jcasgen.running_standalone_with_eclipse">
+         <ttl>Running stand-alone with Eclipse</ttl>
+         <xreftext>Section 6.2, “Running stand-alone with Eclipse”</xreftext>
+      </div>
+      <div element="section" href="#ugr.tools.jcasgen.running_within_eclipse" number="6.3" targetptr="ugr.tools.jcasgen.running_within_eclipse">
+         <ttl>Running within Eclipse</ttl>
+         <xreftext>Section 6.3, “Running within Eclipse”</xreftext>
       </div>
    </div>
-   <div element="chapter" href="#ugr.eclipse_setup" number="3" targetptr="ugr.eclipse_setup">
-      <ttl>Setting up Eclipse IDE to work with UIMA</ttl>
-      <xreftext>Chapter 3, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" font-style="italic">Setting up Eclipse IDE to work with UIMA</fo:inline>
+   <div element="chapter" href="#ugr.tools.pear.packager" number="7" targetptr="ugr.tools.pear.packager">
+      <ttl>PEAR Packager User's Guide</ttl>
+      <xreftext>Chapter 7, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" font-style="italic">PEAR Packager User's Guide</fo:inline>
       </xreftext>
-      <div element="section" href="#d0e1462" number="3.1">
-         <ttl>Installation</ttl>
-         <xreftext>Section 3.1, “Installation”</xreftext>
-         <div element="section" href="#d0e1465" number="3.1.1">
-            <ttl>Install Eclipse</ttl>
-            <xreftext>Section 3.1.1, “Install Eclipse”</xreftext>
-         </div>
-         <div element="section" href="#d0e1486" number="3.1.2">
-            <ttl>Install additional Eclipse component: EMF</ttl>
-            <xreftext>Section 3.1.2, “Install additional Eclipse component: EMF”</xreftext>
-         </div>
-         <div element="section" href="#d0e1538" number="3.1.3">
-            <ttl>Install the UIMA SDK</ttl>
-            <xreftext>Section 3.1.3, “Install the UIMA SDK”</xreftext>
-         </div>
-         <div element="section" href="#d0e1545" number="3.1.4">
-            <ttl>Install the UIMA Eclipse Plugins</ttl>
-            <xreftext>Section 3.1.4, “Install the UIMA Eclipse Plugins”</xreftext>
-         </div>
-         <div element="section" href="#d0e1550" number="3.1.5">
-            <ttl>Start Eclipse</ttl>
-            <xreftext>Section 3.1.5, “Start Eclipse”</xreftext>
-            <div element="section" href="#d0e1566" number="3.1.5.1">
-               <ttl>Special startup parameter for Eclipse: -clean</ttl>
-               <xreftext>Section 3.1.5.1, “Special startup parameter for Eclipse: -clean”</xreftext>
+      <div element="section" href="#ugr.tools.pear.packager.using_eclipse_plugin" number="7.1" targetptr="ugr.tools.pear.packager.using_eclipse_plugin">
+         <ttl>Using the PEAR Eclipse Plugin</ttl>
+         <xreftext>Section 7.1, “Using the PEAR Eclipse Plugin”</xreftext>
+         <div element="section" href="#ugr.tools.pear.packager.add_uima_nature" number="7.1.1" targetptr="ugr.tools.pear.packager.add_uima_nature">
+            <ttl>Add UIMA Nature to your project</ttl>
+            <xreftext>Section 7.1.1, “Add UIMA Nature to your project”</xreftext>
+            <obj element="figure" href="#ugr.tools.pear.packager.fig.pear_structure" number="7.1" targetptr="ugr.tools.pear.packager.fig.pear_structure">
+               <ttl>The Pear Structure</ttl>
+               <xreftext>Figure 7.1, “The Pear Structure”</xreftext>
+            </obj>
+         </div>
+         <div element="section" href="#ugr.tools.pear.packager.using_pear_generation_wizard" number="7.1.2" targetptr="ugr.tools.pear.packager.using_pear_generation_wizard">
+            <ttl>Using the PEAR Generation Wizard</ttl>
+            <xreftext>Section 7.1.2, “Using the PEAR Generation Wizard”</xreftext>
+            <div element="section" href="#ugr.tools.pear.packager.wizard.component_information" number="7.1.2.1" targetptr="ugr.tools.pear.packager.wizard.component_information">
+               <ttl>The Component Information page</ttl>
+               <xreftext>Section 7.1.2.1, “The Component Information page”</xreftext>
+               <obj element="figure" href="#ugr.tools.pear.packager.fig.wizard.component_information" number="7.2" targetptr="ugr.tools.pear.packager.fig.wizard.component_information">
+                  <ttl>The Component Information Page</ttl>
+                  <xreftext>Figure 7.2, “The Component Information Page”</xreftext>
+               </obj>
+            </div>
+            <div element="section" href="#ugr.tools.pear.packager.wizard.install_environment" number="7.1.2.2" targetptr="ugr.tools.pear.packager.wizard.install_environment">
+               <ttl>The Installation Environment page</ttl>
+               <xreftext>Section 7.1.2.2, “The Installation Environment page”</xreftext>
+               <obj element="figure" href="#ugr.tools.pear.packager.fig.wizard.install_environment" number="7.3" targetptr="ugr.tools.pear.packager.fig.wizard.install_environment">
+                  <ttl>The Installation Environment Page</ttl>
+                  <xreftext>Figure 7.3, “The Installation Environment Page”</xreftext>
+               </obj>
+            </div>
+            <div element="section" href="#ugr.tools.pear.packager.wizard.file_content" number="7.1.2.3" targetptr="ugr.tools.pear.packager.wizard.file_content">
+               <ttl>The PEAR file content page</ttl>
+               <xreftext>Section 7.1.2.3, “The PEAR file content page”</xreftext>
+               <obj element="figure" href="#ugr.tools.pear.packager.fig.wizard.export" number="7.4" targetptr="ugr.tools.pear.packager.fig.wizard.export">
+                  <ttl>The PEAR File Export Page</ttl>
+                  <xreftext>Figure 7.4, “The PEAR File Export Page”</xreftext>
+               </obj>
             </div>
          </div>
       </div>
-      <div element="section" href="#ugr.eclipse_setup.example_code" number="3.2" targetptr="ugr.eclipse_setup.example_code">
-         <ttl>Setting up Eclipse to view Example Code</ttl>
-         <xreftext>Section 3.2, “Setting up Eclipse to view Example Code”</xreftext>
-      </div>
-      <div element="section" href="#d0e1669" number="3.3">
-         <ttl>Running external tools from Eclipse</ttl>
-         <xreftext>Section 3.3, “Running external tools from Eclipse”</xreftext>
-      </div>
    </div>
-   <div element="chapter" href="#ugr.faqs" number="4" targetptr="ugr.faqs">
-      <ttl>UIMA Frequently Asked Questions (FAQs)</ttl>
-      <xreftext>Chapter 4, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" font-style="italic">UIMA Frequently Asked Questions (FAQs)</fo:inline>
+   <div element="chapter" href="#ugr.tools.pear.installer" number="8" targetptr="ugr.tools.pear.installer">
+      <ttl>PEAR Installer User's Guide</ttl>
+      <xreftext>Chapter 8, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" font-style="italic">PEAR Installer User's Guide</fo:inline>
       </xreftext>
    </div>
-   <div element="chapter" href="#ugr.glossary" number="5" targetptr="ugr.glossary">
-      <ttl>Glossary of Key Terms and Concepts</ttl>
-      <xreftext>Chapter 5, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" font-style="italic">Glossary of Key Terms and Concepts</fo:inline>
+   <div element="chapter" href="#ugr.tools.pear.merger" number="9" targetptr="ugr.tools.pear.merger">
+      <ttl>PEAR Merger User's Guide</ttl>
+      <xreftext>Chapter 9, <fo:inline xmlns:fo="http://www.w3.org/1999/XSL/Format" font-style="italic">PEAR Merger User's Guide</fo:inline>
       </xreftext>
-      <obj element="glossentry" href="#ugr.glossary.aggregate" number="" targetptr="ugr.glossary.aggregate">
-         <ttl>Aggregate Analysis Engine</ttl>
-         <xreftext>Aggregate Analysis Engine</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.analysis_engine" number="" targetptr="ugr.glossary.analysis_engine">
-         <ttl>Analysis Engine</ttl>
-         <xreftext>Analysis Engine</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.annotation" number="" targetptr="ugr.glossary.annotation">
-         <ttl>Annotation</ttl>
-         <xreftext>Annotation</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.annotator" number="" targetptr="ugr.glossary.annotator">
-         <ttl>Annotator</ttl>
-         <xreftext>Annotator</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.application" number="" targetptr="ugr.glossary.application">
-         <ttl>Application</ttl>
-         <xreftext>Application</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.cas" number="" targetptr="ugr.glossary.cas">
-         <ttl>CAS</ttl>
-         <xreftext>CAS</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.cas_consumer" number="" targetptr="ugr.glossary.cas_consumer">
-         <ttl>CAS Consumer</ttl>
-         <xreftext>CAS Consumer</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.cas_initializer" number="" targetptr="ugr.glossary.cas_initializer">
-         <ttl>CAS Initializer (deprecated)</ttl>
-         <xreftext>CAS Initializer (deprecated)</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.cas_multiplier" number="" targetptr="ugr.glossary.cas_multiplier">
-         <ttl>CAS Multiplier</ttl>
-         <xreftext>CAS Multiplier</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.cas_processor" number="" targetptr="ugr.glossary.cas_processor">
-         <ttl>CAS Processor</ttl>
-         <xreftext>CAS Processor</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.cas_view" number="" targetptr="ugr.glossary.cas_view">
-         <ttl>CAS View</ttl>
-         <xreftext>CAS View</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.cde" number="" targetptr="ugr.glossary.cde">
-         <ttl>CDE</ttl>
-         <xreftext>CDE</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.cpe" number="" targetptr="ugr.glossary.cpe">
-         <ttl>Collection Processing Engine (CPE)</ttl>
-         <xreftext>Collection Processing Engine (CPE)</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.cpm" number="" targetptr="ugr.glossary.cpm">
-         <ttl>Collection Processing Manager (CPM)</ttl>
-         <xreftext>Collection Processing Manager (CPM)</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.collection_reader" number="" targetptr="ugr.glossary.collection_reader">
-         <ttl>Collection Reader</ttl>
-         <xreftext>Collection Reader</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.fact_search" number="" targetptr="ugr.glossary.fact_search">
-         <ttl>Fact Search</ttl>
-         <xreftext>Fact Search</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.feature" number="" targetptr="ugr.glossary.feature">
-         <ttl>Feature</ttl>
-         <xreftext>Feature</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.flow_controller" number="" targetptr="ugr.glossary.flow_controller">
-         <ttl>Flow Controller</ttl>
-         <xreftext>Flow Controller</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.hybrid_analysis_engine" number="" targetptr="ugr.glossary.hybrid_analysis_engine">
-         <ttl>Hybrid Analysis Engine</ttl>
-         <xreftext>Hybrid Analysis Engine</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.index" number="" targetptr="ugr.glossary.index">
-         <ttl>Index</ttl>
-         <xreftext>Index</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.jcas" number="" targetptr="ugr.glossary.jcas">
-         <ttl>JCas</ttl>
-         <xreftext>JCas</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.keyword_search" number="" targetptr="ugr.glossary.keyword_search">
-         <ttl>Keyword Search</ttl>
-         <xreftext>Keyword Search</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.knowledge_base" number="" targetptr="ugr.glossary.knowledge_base">
-         <ttl>Knowledge Base</ttl>
-         <xreftext>Knowledge Base</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.loosely_coupled_analysis_engine" number="" targetptr="ugr.glossary.loosely_coupled_analysis_engine">
-         <ttl>Loosely-Coupled Analysis Engine</ttl>
-         <xreftext>Loosely-Coupled Analysis Engine</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.ontology" number="" targetptr="ugr.glossary.ontology">
-         <ttl/>
-         <xreftext/>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.pear" number="" targetptr="ugr.glossary.pear">
-         <ttl>PEAR</ttl>
-         <xreftext>PEAR</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.primitive_analysis_engine" number="" targetptr="ugr.glossary.primitive_analysis_engine">
-         <ttl>Primitive Analysis Engine</ttl>
-         <xreftext>Primitive Analysis Engine</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.semantic_search" number="" targetptr="ugr.glossary.semantic_search">
-         <ttl>Semantic Search</ttl>
-         <xreftext>Semantic Search</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.structured_information" number="" targetptr="ugr.glossary.structured_information">
-         <ttl>Structured Information</ttl>
-         <xreftext>Structured Information</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.sofa" number="" targetptr="ugr.glossary.sofa">
-         <ttl>Subject of Analysis (Sofa)</ttl>
-         <xreftext>Subject of Analysis (Sofa)</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.tightly_coupled_analysis_engine" number="" targetptr="ugr.glossary.tightly_coupled_analysis_engine">
-         <ttl>Tightly-Coupled Analysis Engine</ttl>
-         <xreftext>Tightly-Coupled Analysis Engine</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.type" number="" targetptr="ugr.glossary.type">
-         <ttl>Type</ttl>
-         <xreftext>Type</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.type_system" number="" targetptr="ugr.glossary.type_system">
-         <ttl>Type System</ttl>
-         <xreftext>Type System</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.unstructured_information" number="" targetptr="ugr.glossary.unstructured_information">
-         <ttl>Unstructured Information</ttl>
-         <xreftext>Unstructured Information</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.uima" number="" targetptr="ugr.glossary.uima">
-         <ttl>UIMA</ttl>
-         <xreftext>UIMA</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.uima_java_framework" number="" targetptr="ugr.glossary.uima_java_framework">
-         <ttl>UIMA Java Framework</ttl>
-         <xreftext>UIMA Java Framework</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.uima_sdk" number="" targetptr="ugr.glossary.uima_sdk">
-         <ttl>UIMA Software Development Kit (SDK)</ttl>
-         <xreftext>UIMA Software Development Kit (SDK)</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.xcas" number="" targetptr="ugr.glossary.xcas">
-         <ttl>XCAS</ttl>
-         <xreftext>XCAS</xreftext>
-      </obj>
-      <obj element="glossentry" href="#ugr.glossary.xmi" number="" targetptr="ugr.glossary.xmi">
-         <ttl>XML Metadata Interchange (XMI)</ttl>
-         <xreftext>XML Metadata Interchange (XMI)</xreftext>
-      </obj>
+      <div element="section" href="#ugr.tools.pear.merger.merge_details" number="9.1" targetptr="ugr.tools.pear.merger.merge_details">
+         <ttl>Details of the merging process</ttl>
+         <xreftext>Section 9.1, “Details of the merging process”</xreftext>
+      </div>
+      <div element="section" href="#ugr.tools.pear.merger.testing_modifying_resulting_pear" number="9.2" targetptr="ugr.tools.pear.merger.testing_modifying_resulting_pear">
+         <ttl>Testing and Modifying the resulting PEAR</ttl>
+         <xreftext>Section 9.2, “Testing and Modifying the resulting PEAR”</xreftext>
+      </div>
+      <div element="section" href="#ugr.tools.pear.merger.restrictions_limitations" number="9.3" targetptr="ugr.tools.pear.merger.restrictions_limitations">
+         <ttl>Restrictions and Limitations</ttl>
+         <xreftext>Section 9.3, “Restrictions and Limitations”</xreftext>
+      </div>
    </div>
 </div>

Modified: incubator/uima/uimaj/trunk/uima-docbooks/src/olink/tutorials_and_users_guides/html-target.db
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uima-docbooks/src/olink/tutorials_and_users_guides/html-target.db?view=diff&rev=482771&r1=482770&r2=482771
==============================================================================
--- incubator/uima/uimaj/trunk/uima-docbooks/src/olink/tutorials_and_users_guides/html-target.db (original)
+++ incubator/uima/uimaj/trunk/uima-docbooks/src/olink/tutorials_and_users_guides/html-target.db Tue Dec  5 12:39:49 2006
@@ -1,7 +1,7 @@
 <div element="book" href="index.html" number="" lang="en">
    <ttl>Apache UIMA SDK Tutorial and Developers' Guides</ttl>
    <xreftext>Apache UIMA SDK Tutorial and Developers' Guides</xreftext>
-   <div element="chapter" href="ch01.html" number="1" targetptr="ugr.aae">
+   <div element="chapter" href="ch01.html" number="1" targetptr="ugr.tug.aae">
       <ttl>Annotator and Analysis Engine Developer's Guide</ttl>
       <xreftext>Chapter 1, <i>Annotator and Analysis Engine Developer's Guide</i>
       </xreftext>
@@ -29,10 +29,10 @@
             <xreftext>the section called “Testing Your Annotator”</xreftext>
          </div>
       </div>
-      <div element="section" href="ch01s02.html" number="1.2">
+      <div element="section" href="ch01s02.html" number="1.2" targetptr="ugr.tug.aae.configuration_logging">
          <ttl>Configuration and Logging</ttl>
          <xreftext>Section 1.2, “Configuration and Logging”</xreftext>
-         <div element="section" href="ch01s02.html#d0e611" number="">
+         <div element="section" href="ch01s02.html#ugr.tug.aae.configuration_parameters" number="" targetptr="ugr.tug.aae.configuration_parameters">
             <ttl>Configuration Parameters</ttl>
             <xreftext>the section called “Configuration Parameters”</xreftext>
             <div element="section" href="ch01s02.html#ugr.tug.aae.declaring_parameters_in_the_descriptor" number="" targetptr="ugr.tug.aae.declaring_parameters_in_the_descriptor">
@@ -55,23 +55,23 @@
          <div element="section" href="ch01s02.html#ugr.tug.aae.logging" number="" targetptr="ugr.tug.aae.logging">
             <ttl>Logging</ttl>
             <xreftext>the section called “Logging”</xreftext>
-            <div element="section" href="ch01s02.html#ugr.tug.aae.configuring_logging" number="" targetptr="ugr.tug.aae.configuring_logging">
+            <div element="section" href="ch01s02.html#ugr.tug.aae.logging.configuring" number="" targetptr="ugr.tug.aae.logging.configuring">
                <ttl>Specifying the Logging Configuration</ttl>
                <xreftext>the section called “Specifying the Logging Configuration”</xreftext>
             </div>
-            <div element="section" href="ch01s02.html#d0e813" number="">
+            <div element="section" href="ch01s02.html#ugr.tug.aae.logging.setting_logging_levels" number="" targetptr="ugr.tug.aae.logging.setting_logging_levels">
                <ttl>Setting Logging Levels</ttl>
                <xreftext>the section called “Setting Logging Levels”</xreftext>
             </div>
-            <div element="section" href="ch01s02.html#d0e842" number="">
+            <div element="section" href="ch01s02.html#ugr.tug.aae.logging.output_format" number="" targetptr="ugr.tug.aae.logging.output_format">
                <ttl>Format of logging output</ttl>
                <xreftext>the section called “Format of logging output”</xreftext>
             </div>
-            <div element="section" href="ch01s02.html#d0e855" number="">
+            <div element="section" href="ch01s02.html#ugr.tug.aae.logging.meaning_of_severity_levels" number="" targetptr="ugr.tug.aae.logging.meaning_of_severity_levels">
                <ttl>Meaning of the logging severity levels</ttl>
                <xreftext>the section called “Meaning of the logging severity levels”</xreftext>
             </div>
-            <div element="section" href="ch01s02.html#d0e894" number="">
+            <div element="section" href="ch01s02.html#ugr.tug.aae.logging.using_outside_of_an_annotator" number="" targetptr="ugr.tug.aae.logging.using_outside_of_an_annotator">
                <ttl>Using the logger outside of an annotator</ttl>
                <xreftext>the section called “Using the logger outside of an annotator”</xreftext>
             </div>
@@ -88,7 +88,7 @@
                </obj>
             </div>
          </div>
-         <div element="section" href="ch01s02.html#d0e1017" number="">
+         <div element="section" href="ch01s02.html#ugr.tug.aae.aaes_can_contain_cas_consumers" number="" targetptr="ugr.tug.aae.aaes_can_contain_cas_consumers">
             <ttl>Aggregate Engines can also contain CAS Consumers</ttl>
             <xreftext>the section called “Aggregate Engines can also contain CAS Consumers”</xreftext>
          </div>
@@ -125,15 +125,15 @@
          <div element="section" href="ch01s04.html#ugr.tug.aae.accessing_external_resource_files" number="" targetptr="ugr.tug.aae.accessing_external_resource_files">
             <ttl>Accessing External Resource Files</ttl>
             <xreftext>the section called “Accessing External Resource Files”</xreftext>
-            <div element="section" href="ch01s04.html#d0e1344" number="">
+            <div element="section" href="ch01s04.html#ugr.tug.aae.resources.declaring_dependencies" number="" targetptr="ugr.tug.aae.resources.declaring_dependencies">
                <ttl>Declaring Resource Dependencies</ttl>
                <xreftext>the section called “Declaring Resource Dependencies”</xreftext>
             </div>
-            <div element="section" href="ch01s04.html#d0e1356" number="">
+            <div element="section" href="ch01s04.html#ugr.tug.aae.resources.accessing_from_uimacontext" number="" targetptr="ugr.tug.aae.resources.accessing_from_uimacontext">
                <ttl>Accessing the Resource from the UimaContext</ttl>
                <xreftext>the section called “Accessing the Resource from the UimaContext”</xreftext>
             </div>
-            <div element="section" href="ch01s04.html#d0e1391" number="">
+            <div element="section" href="ch01s04.html#ugr.tug.aae.resources.declaring_and_bindings" number="" targetptr="ugr.tug.aae.resources.declaring_and_bindings">
                <ttl>Declaring Resources and Bindings</ttl>
                <xreftext>the section called “Declaring Resources and Bindings”</xreftext>
                <obj element="figure" href="ch01s04.html#ugr.tug.aae.fig.external_resource_binding" number="1.3" targetptr="ugr.tug.aae.fig.external_resource_binding">
@@ -141,9 +141,9 @@
                   <xreftext>Figure 1.3, “External Resource Binding”</xreftext>
                </obj>
             </div>
-            <div element="section" href="ch01s04.html#d0e1451" number="">
-               <ttl>Sharing Resources between Annotators</ttl>
-               <xreftext>the section called “Sharing Resources between Annotators”</xreftext>
+            <div element="section" href="ch01s04.html#ugr.tug.aae.resources.sharing_among_annotators" number="" targetptr="ugr.tug.aae.resources.sharing_among_annotators">
+               <ttl>Sharing Resources among Annotators</ttl>
+               <xreftext>the section called “Sharing Resources among Annotators”</xreftext>
                <obj element="figure" href="ch01s04.html#ugr.tug.aae.fig.sharing_common_resource" number="1.4" targetptr="ugr.tug.aae.fig.sharing_common_resource">
                   <ttl>Component engines of an aggregate share a common resource</ttl>
                   <xreftext>Figure 1.4, “Component engines of an aggregate share a common resource”</xreftext>
@@ -154,42 +154,42 @@
             <ttl>Result Specification Setting</ttl>
             <xreftext>the section called “Result Specification Setting”</xreftext>
          </div>
-         <div element="section" href="ch01s04.html#d0e1510" number="">
+         <div element="section" href="ch01s04.html#ugr.tug.aae.result_spec.default" number="" targetptr="ugr.tug.aae.result_spec.default">
             <ttl>Default ResultSpecification</ttl>
             <xreftext>the section called “Default ResultSpecification”</xreftext>
          </div>
-         <div element="section" href="ch01s04.html#d0e1515" number="">
+         <div element="section" href="ch01s04.html#ugr.tug.aae.result_spec.passing_to_annotators" number="" targetptr="ugr.tug.aae.result_spec.passing_to_annotators">
             <ttl>Passing Result Specifications to Annotators</ttl>
             <xreftext>the section called “Passing Result Specifications to Annotators”</xreftext>
          </div>
-         <div element="section" href="ch01s04.html#d0e1520" number="">
+         <div element="section" href="ch01s04.html#ugr.tug.aae.result_spec.aggregates" number="" targetptr="ugr.tug.aae.result_spec.aggregates">
             <ttl>Aggregates</ttl>
             <xreftext>the section called “Aggregates”</xreftext>
+            <div element="section" href="ch01s04.html#ugr.tug.aae.result_spec.aggregates.fixed_flow" number="" targetptr="ugr.tug.aae.result_spec.aggregates.fixed_flow">
+               <ttl>Fixed Flow</ttl>
+               <xreftext>the section called “Fixed Flow”</xreftext>
+            </div>
+            <div element="section" href="ch01s04.html#ugr.tug.aae.result_spec.aggregates.capability_language_flow" number="" targetptr="ugr.tug.aae.result_spec.aggregates.capability_language_flow">
+               <ttl>CapabilityLanguageFlow</ttl>
+               <xreftext>the section called “CapabilityLanguageFlow”</xreftext>
+            </div>
+            <div element="section" href="ch01s04.html#ugr.tug.aae.skipping_ae_in_capability_language_flow" number="" targetptr="ugr.tug.aae.skipping_ae_in_capability_language_flow">
+               <ttl>Special rule for skipping Analysis Engines</ttl>
+               <xreftext>the section called “Special rule for skipping Analysis Engines”</xreftext>
+            </div>
+            <div element="section" href="ch01s04.html#ugr.tug.aae.result_spec.aggregates.cpes" number="" targetptr="ugr.tug.aae.result_spec.aggregates.cpes">
+               <ttl>Collection Proessing Engines</ttl>
+               <xreftext>the section called “Collection Proessing Engines”</xreftext>
+            </div>
          </div>
-         <div element="section" href="ch01s04.html#d0e1525" number="">
-            <ttl>Fixed Flow</ttl>
-            <xreftext>the section called “Fixed Flow”</xreftext>
-         </div>
-         <div element="section" href="ch01s04.html#d0e1530" number="">
-            <ttl>CapabilityLanguageFlow</ttl>
-            <xreftext>the section called “CapabilityLanguageFlow”</xreftext>
-         </div>
-         <div element="section" href="ch01s04.html#d0e1537" number="">
-            <ttl>Special rule for skipping Analysis Engines</ttl>
-            <xreftext>the section called “Special rule for skipping Analysis Engines”</xreftext>
-         </div>
-         <div element="section" href="ch01s04.html#d0e1546" number="">
-            <ttl>Collection Proessing Engines</ttl>
-            <xreftext>the section called “Collection Proessing Engines”</xreftext>
-         </div>
-         <div element="section" href="ch01s04.html#d0e1551" number="">
+         <div element="section" href="ch01s04.html#ugr.tug.aae.classpath_when_using_jcas" number="" targetptr="ugr.tug.aae.classpath_when_using_jcas">
             <ttl>Class path setup when using JCas</ttl>
             <xreftext>the section called “Class path setup when using JCas”</xreftext>
          </div>
          <div element="section" href="ch01s04.html#ugr.tug.aae.using_shell_scripts" number="" targetptr="ugr.tug.aae.using_shell_scripts">
             <ttl>Using the Shell Scripts</ttl>
             <xreftext>the section called “Using the Shell Scripts”</xreftext>
-            <obj element="table" href="ch01s04.html#d0e1583" number="1.1">
+            <obj element="table" href="ch01s04.html#ugr.aae.tbl.env_vars_used_by_shell_scripts" number="1.1" targetptr="ugr.aae.tbl.env_vars_used_by_shell_scripts">
                <ttl>Environment variables used by the shell scripts</ttl>
                <xreftext>Table 1.1, “Environment variables used by the shell scripts”</xreftext>
             </obj>
@@ -222,10 +222,10 @@
             <ttl>Capabilities</ttl>
             <xreftext>the section called “Capabilities”</xreftext>
          </div>
-         <div element="section" href="ch01s07.html#ugr.tug.aae.xml_intro_configuration_parameters" number="" targetptr="ugr.tug.aae.xml_intro_configuration_parameters">
+         <div element="section" href="ch01s07.html#ugr.tug.aae.xml_intro.configuration_parameters" number="" targetptr="ugr.tug.aae.xml_intro.configuration_parameters">
             <ttl>Configuration Parameters (Optional)</ttl>
             <xreftext>the section called “Configuration Parameters (Optional)”</xreftext>
-            <div element="section" href="ch01s07.html#d0e1771" number="">
+            <div element="section" href="ch01s07.html#ugr.tug.aae.xml_intro.configuration_parameters_declarations" number="" targetptr="ugr.tug.aae.xml_intro.configuration_parameters_declarations">
                <ttl>Configuration Parameter Declarations</ttl>
                <xreftext>the section called “Configuration Parameter Declarations”</xreftext>
             </div>
@@ -233,7 +233,7 @@
                <ttl>Configuration Parameter Settings</ttl>
                <xreftext>the section called “Configuration Parameter Settings”</xreftext>
             </div>
-            <div element="section" href="ch01s07.html#d0e1814" number="">
+            <div element="section" href="ch01s07.html#ugr.tug.aae.xml_intro.aggregate" number="" targetptr="ugr.tug.aae.xml_intro.aggregate">
                <ttl>Aggregate Analysis Engine Descriptor</ttl>
                <xreftext>the section called “Aggregate Analysis Engine Descriptor”</xreftext>
             </div>
@@ -275,88 +275,88 @@
       <div element="section" href="ch02s04.html" number="2.4" targetptr="ugr.tug.cpe.developing_collection_processing_components">
          <ttl>Developing Collection Processing Components</ttl>
          <xreftext>Section 2.4, “Developing Collection Processing Components”</xreftext>
-         <div element="section" href="ch02s04.html#ugr.tug.cpe.developing_collection_readers" number="" targetptr="ugr.tug.cpe.developing_collection_readers">
+         <div element="section" href="ch02s04.html#ugr.tug.cpe.collection_reader.developing" number="" targetptr="ugr.tug.cpe.collection_reader.developing">
             <ttl>Developing Collection Readers</ttl>
             <xreftext>the section called “Developing Collection Readers”</xreftext>
-            <div element="section" href="ch02s04.html#d0e2190" number="">
+            <div element="section" href="ch02s04.html#ugr.tug.cpe.collection_reader.java_class" number="" targetptr="ugr.tug.cpe.collection_reader.java_class">
                <ttl>Java Class for the Collection Reader</ttl>
                <xreftext>the section called “Java Class for the Collection Reader”</xreftext>
             </div>
-            <div element="section" href="ch02s04.html#d0e2254" number="">
+            <div element="section" href="ch02s04.html#ugr.tug.cpe.collection_reader.required_methods" number="" targetptr="ugr.tug.cpe.collection_reader.required_methods">
                <ttl>Required Methods in the Collection Reader class</ttl>
                <xreftext>the section called “Required Methods in the Collection Reader class”</xreftext>
-               <div element="section" href="ch02s04.html#d0e2259" number="">
+               <div element="section" href="ch02s04.html#ugr.tug.cpe.collection_reader.required_methods.initialize" number="" targetptr="ugr.tug.cpe.collection_reader.required_methods.initialize">
                   <ttl>initialize()</ttl>
                   <xreftext>the section called “initialize()”</xreftext>
                </div>
-               <div element="section" href="ch02s04.html#d0e2283" number="">
+               <div element="section" href="ch02s04.html#ugr.tug.cpe.collection_reader.hasnext" number="" targetptr="ugr.tug.cpe.collection_reader.hasnext">
                   <ttl>hasNext()</ttl>
                   <xreftext>the section called “hasNext()”</xreftext>
                </div>
-               <div element="section" href="ch02s04.html#d0e2297" number="">
+               <div element="section" href="ch02s04.html#ugr.tug.cpe.collection_reader.required_methods.getnext" number="" targetptr="ugr.tug.cpe.collection_reader.required_methods.getnext">
                   <ttl>getNext(CAS)</ttl>
                   <xreftext>the section called “getNext(CAS)”</xreftext>
                </div>
-               <div element="section" href="ch02s04.html#d0e2338" number="">
+               <div element="section" href="ch02s04.html#ugr.tug.cpe.collection_reader.required_methods.getprogress" number="" targetptr="ugr.tug.cpe.collection_reader.required_methods.getprogress">
                   <ttl>getProgress()</ttl>
                   <xreftext>the section called “getProgress()”</xreftext>
                </div>
-               <div element="section" href="ch02s04.html#d0e2365" number="">
+               <div element="section" href="ch02s04.html#ugr.tug.cpe.collection_reader.required_methods.close" number="" targetptr="ugr.tug.cpe.collection_reader.required_methods.close">
                   <ttl>close()</ttl>
                   <xreftext>the section called “close()”</xreftext>
                </div>
-               <div element="section" href="ch02s04.html#d0e2372" number="">
+               <div element="section" href="ch02s04.html#ugr.tug.cpe.collection_reader.optional_methods" number="" targetptr="ugr.tug.cpe.collection_reader.optional_methods">
                   <ttl>Optional Methods</ttl>
                   <xreftext>the section called “Optional Methods”</xreftext>
-                  <div element="section" href="ch02s04.html#d0e2377" number="">
+                  <div element="section" href="ch02s04.html#ugr.tug.cpe.collection_reader.optional_methods.reconfigure" number="" targetptr="ugr.tug.cpe.collection_reader.optional_methods.reconfigure">
                      <ttl>reconfigure()</ttl>
                      <xreftext>the section called “reconfigure()”</xreftext>
                   </div>
-                  <div element="section" href="ch02s04.html#d0e2382" number="">
+                  <div element="section" href="ch02s04.html#ugr.tug.cpe.collection_reader.optional_methods.typesysteminit" number="" targetptr="ugr.tug.cpe.collection_reader.optional_methods.typesysteminit">
                      <ttl>typeSystemInit()</ttl>
                      <xreftext>the section called “typeSystemInit()”</xreftext>
                   </div>
                </div>
-               <div element="section" href="ch02s04.html#d0e2389" number="">
+               <div element="section" href="ch02s04.html#ugr.tug.cpe.collection_reader.threading" number="" targetptr="ugr.tug.cpe.collection_reader.threading">
                   <ttl>Threading considerations</ttl>
                   <xreftext>the section called “Threading considerations”</xreftext>
                </div>
-               <div element="section" href="ch02s04.html#d0e2394" number="">
+               <div element="section" href="ch02s04.html#ugr.tug.cpe.collection_reader.descriptor" number="" targetptr="ugr.tug.cpe.collection_reader.descriptor">
                   <ttl>XML Descriptor for a Collection Reader</ttl>
                   <xreftext>the section called “XML Descriptor for a Collection Reader”</xreftext>
                </div>
             </div>
          </div>
-         <div element="section" href="ch02s04.html#ugr.tug.cpe.developing_cas_initializers" number="" targetptr="ugr.tug.cpe.developing_cas_initializers">
+         <div element="section" href="ch02s04.html#ugr.tug.cpe.cas_initializer.developing" number="" targetptr="ugr.tug.cpe.cas_initializer.developing">
             <ttl>Developing CAS
       Initializers</ttl>
             <xreftext>the section called “Developing CAS
       Initializers”</xreftext>
          </div>
-         <div element="section" href="ch02s04.html#ugr.tug.cpe.developing_cas_consumers" number="" targetptr="ugr.tug.cpe.developing_cas_consumers">
+         <div element="section" href="ch02s04.html#ugr.tug.cpe.cas_consumer.developing" number="" targetptr="ugr.tug.cpe.cas_consumer.developing">
             <ttl>Developing CAS
       Consumers</ttl>
             <xreftext>the section called “Developing CAS
       Consumers”</xreftext>
-            <div element="section" href="ch02s04.html#d0e2591" number="">
+            <div element="section" href="ch02s04.html#ugr.tug.cpe.cas_consumer.required_methods" number="" targetptr="ugr.tug.cpe.cas_consumer.required_methods">
                <ttl>Required Methods for a CAS Consumer</ttl>
                <xreftext>the section called “Required Methods for a CAS Consumer”</xreftext>
-               <div element="section" href="ch02s04.html#d0e2599" number="">
+               <div element="section" href="ch02s04.html#ugr.tug.cpe.cas_consumer.required_methods.initialize" number="" targetptr="ugr.tug.cpe.cas_consumer.required_methods.initialize">
                   <ttl>initialize()</ttl>
                   <xreftext>the section called “initialize()”</xreftext>
                </div>
-               <div element="section" href="ch02s04.html#d0e2614" number="">
+               <div element="section" href="ch02s04.html#ugr.tug.cpe.cas_consumer.required_methods.processcas" number="" targetptr="ugr.tug.cpe.cas_consumer.required_methods.processcas">
                   <ttl>processCas()</ttl>
                   <xreftext>the section called “processCas()”</xreftext>
                </div>
-               <div element="section" href="ch02s04.html#d0e2633" number="">
+               <div element="section" href="ch02s04.html#ugr.tug.cpe.cas_consumer.optional_methods" number="" targetptr="ugr.tug.cpe.cas_consumer.optional_methods">
                   <ttl>Optional Methods&gt;</ttl>
                   <xreftext>the section called “Optional Methods&gt;”</xreftext>
-                  <div element="section" href="ch02s04.html#d0e2638" number="">
+                  <div element="section" href="ch02s04.html#ugr.tug.cpe.cas_consumer.optional_methods.batchprocesscomplete" number="" targetptr="ugr.tug.cpe.cas_consumer.optional_methods.batchprocesscomplete">
                      <ttl>batchProcessComplete()</ttl>
                      <xreftext>the section called “batchProcessComplete()”</xreftext>
                   </div>
-                  <div element="section" href="ch02s04.html#d0e2643" number="">
+                  <div element="section" href="ch02s04.html#ugr.tug.cpe.cas_consumer.optional_methods.collectionprocesscomplete" number="" targetptr="ugr.tug.cpe.cas_consumer.optional_methods.collectionprocesscomplete">
                      <ttl>collectionProcessComplete()</ttl>
                      <xreftext>the section called “collectionProcessComplete()”</xreftext>
                   </div>
@@ -558,11 +558,11 @@
          <div element="section" href="ch04.html#ugr.tug.fc.example_code" number="" targetptr="ugr.tug.fc.example_code">
             <ttl>Example Code</ttl>
             <xreftext>the section called “Example Code”</xreftext>
-            <div element="section" href="ch04.html#d0e4410" number="">
+            <div element="section" href="ch04.html#ugr.tug.fc.whiteboard" number="" targetptr="ugr.tug.fc.whiteboard">
                <ttl>The WhiteboardFlowController Class</ttl>
                <xreftext>the section called “The WhiteboardFlowController Class”</xreftext>
             </div>
-            <div element="section" href="ch04.html#d0e4446" number="">
+            <div element="section" href="ch04.html#ugr.tug.fc.whiteboardflow" number="" targetptr="ugr.tug.fc.whiteboardflow">
                <ttl>The WhiteboardFlow Class</ttl>
                <xreftext>the section called “The WhiteboardFlow Class”</xreftext>
             </div>
@@ -715,19 +715,19 @@
       <div element="section" href="ch06s06.html" number="6.6" targetptr="ugr.tug.mvs.sample_application">
          <ttl>Sample Multi-View Application</ttl>
          <xreftext>Section 6.6, “Sample Multi-View Application”</xreftext>
-         <div element="section" href="ch06s06.html#d0e5136" number="">
+         <div element="section" href="ch06s06.html#ugr.tug.mvs.sample_application.descriptor" number="" targetptr="ugr.tug.mvs.sample_application.descriptor">
             <ttl>Annotator Descriptor</ttl>
             <xreftext>the section called “Annotator Descriptor”</xreftext>
          </div>
-         <div element="section" href="ch06s06.html#d0e5163" number="">
+         <div element="section" href="ch06s06.html#ugr.tug.mvs.sample_application.setup" number="" targetptr="ugr.tug.mvs.sample_application.setup">
             <ttl>Application Setup</ttl>
             <xreftext>the section called “Application Setup”</xreftext>
          </div>
-         <div element="section" href="ch06s06.html#d0e5185" number="">
+         <div element="section" href="ch06s06.html#ugr.tug.mvs.sample_application.annotator_processing" number="" targetptr="ugr.tug.mvs.sample_application.annotator_processing">
             <ttl>Annotator Processing</ttl>
             <xreftext>the section called “Annotator Processing”</xreftext>
          </div>
-         <div element="section" href="ch06s06.html#d0e5208" number="">
+         <div element="section" href="ch06s06.html#ugr.tug.mvs.sample_application.accessing_results" number="" targetptr="ugr.tug.mvs.sample_application.accessing_results">
             <ttl>Accessing the results of analysis</ttl>
             <xreftext>the section called “Accessing the results of analysis”</xreftext>
          </div>
@@ -759,23 +759,23 @@
          <div element="section" href="ch07.html#ugr.tug.cm.example_code" number="" targetptr="ugr.tug.cm.example_code">
             <ttl>Example Code</ttl>
             <xreftext>the section called “Example Code”</xreftext>
-            <div element="section" href="ch07.html#d0e5461" number="">
+            <div element="section" href="ch07.html#ugr.tug.cm.example_code.overall_structure" number="" targetptr="ugr.tug.cm.example_code.overall_structure">
                <ttl>Overall Structure</ttl>
                <xreftext>the section called “Overall Structure”</xreftext>
             </div>
-            <div element="section" href="ch07.html#d0e5486" number="">
+            <div element="section" href="ch07.html#ugr.tug.cm.example_code.initialize" number="" targetptr="ugr.tug.cm.example_code.initialize">
                <ttl>Initialize Method</ttl>
                <xreftext>the section called “Initialize Method”</xreftext>
             </div>
-            <div element="section" href="ch07.html#d0e5496" number="">
+            <div element="section" href="ch07.html#ugr.tug.cm.example_code.process" number="" targetptr="ugr.tug.cm.example_code.process">
                <ttl>Process Method</ttl>
                <xreftext>the section called “Process Method”</xreftext>
             </div>
-            <div element="section" href="ch07.html#d0e5508" number="">
+            <div element="section" href="ch07.html#ugr.tug.cm.example_code.hasnext" number="" targetptr="ugr.tug.cm.example_code.hasnext">
                <ttl>HasNext Method</ttl>
                <xreftext>the section called “HasNext Method”</xreftext>
             </div>
-            <div element="section" href="ch07.html#d0e5515" number="">
+            <div element="section" href="ch07.html#ugr.tug.cm.example_code.next" number="" targetptr="ugr.tug.cm.example_code.next">
                <ttl>Next Method</ttl>
                <xreftext>the section called “Next Method”</xreftext>
             </div>
@@ -819,11 +819,11 @@
          <div element="section" href="ch07s06.html#ugr.tug.cm.example_cas_merger" number="" targetptr="ugr.tug.cm.example_cas_merger">
             <ttl>Example CAS Merger</ttl>
             <xreftext>the section called “Example CAS Merger”</xreftext>
-            <div element="section" href="ch07s06.html#d0e5873" number="">
+            <div element="section" href="ch07s06.html#ugr.tug.cm.example_cas_merger.process" number="" targetptr="ugr.tug.cm.example_cas_merger.process">
                <ttl>Process Method</ttl>
                <xreftext>the section called “Process Method”</xreftext>
             </div>
-            <div element="section" href="ch07s06.html#d0e5932" number="">
+            <div element="section" href="ch07s06.html#ugr.tug.cm.example_cas_merger.hasnext_and_next" number="" targetptr="ugr.tug.cm.example_cas_merger.hasnext_and_next">
                <ttl>HasNext and Next Methods</ttl>
                <xreftext>the section called “HasNext and Next Methods”</xreftext>
             </div>