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Posted to commits@ctakes.apache.org by dl...@apache.org on 2016/04/28 18:38:11 UTC
svn commit: r1741474 -
/ctakes/sandbox/ctakes-wsd/src/main/java/org/apache/ctakes/consumers/DataForWord2Vec.java
Author: dligach
Date: Thu Apr 28 16:38:11 2016
New Revision: 1741474
URL: http://svn.apache.org/viewvc?rev=1741474&view=rev
Log:
extracting what's need to run word2vec from xmi files
Added:
ctakes/sandbox/ctakes-wsd/src/main/java/org/apache/ctakes/consumers/DataForWord2Vec.java
Added: ctakes/sandbox/ctakes-wsd/src/main/java/org/apache/ctakes/consumers/DataForWord2Vec.java
URL: http://svn.apache.org/viewvc/ctakes/sandbox/ctakes-wsd/src/main/java/org/apache/ctakes/consumers/DataForWord2Vec.java?rev=1741474&view=auto
==============================================================================
--- ctakes/sandbox/ctakes-wsd/src/main/java/org/apache/ctakes/consumers/DataForWord2Vec.java (added)
+++ ctakes/sandbox/ctakes-wsd/src/main/java/org/apache/ctakes/consumers/DataForWord2Vec.java Thu Apr 28 16:38:11 2016
@@ -0,0 +1,118 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.apache.ctakes.consumers;
+
+import java.io.File;
+
+import org.apache.ctakes.typesystem.type.syntax.BaseToken;
+import org.apache.ctakes.typesystem.type.textsem.EntityMention;
+import org.apache.ctakes.typesystem.type.textsem.EventMention;
+import org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation;
+import org.apache.ctakes.utils.Utils;
+import org.apache.uima.analysis_engine.AnalysisEngine;
+import org.apache.uima.analysis_engine.AnalysisEngineProcessException;
+import org.apache.uima.cas.CASException;
+import org.apache.uima.collection.CollectionReader;
+import org.apache.uima.fit.component.JCasAnnotator_ImplBase;
+import org.apache.uima.fit.factory.AnalysisEngineFactory;
+import org.apache.uima.fit.pipeline.SimplePipeline;
+import org.apache.uima.fit.util.JCasUtil;
+import org.apache.uima.jcas.JCas;
+
+import com.lexicalscope.jewel.cli.CliFactory;
+import com.lexicalscope.jewel.cli.Option;
+
+/**
+ * Read cTAKES annotations from XMI files.
+ *
+ * @author dmitriy dligach
+ */
+public class DataForWord2Vec {
+
+ static interface Options {
+
+ @Option(
+ longName = "xmi-dir",
+ description = "path to xmi files")
+ public File getInputDirectory();
+ }
+
+ public static void main(String[] args) throws Exception {
+
+ Options options = CliFactory.parseArguments(Options.class, args);
+ CollectionReader collectionReader = Utils.getCollectionReader(options.getInputDirectory());
+ AnalysisEngine annotationConsumer = AnalysisEngineFactory.createEngine(AnnotationPrinter.class);
+ SimplePipeline.runPipeline(collectionReader, annotationConsumer);
+ }
+
+ public static class AnnotationPrinter extends JCasAnnotator_ImplBase {
+
+ @Override
+ public void process(JCas jCas) throws AnalysisEngineProcessException {
+
+ JCas systemView;
+ try {
+ systemView = jCas.getView("_InitialView");
+ } catch (CASException e) {
+ throw new AnalysisEngineProcessException(e);
+ }
+
+ for(BaseToken token : JCasUtil.select(systemView, BaseToken.class)) {
+ String stringValue = tokenToString(token);
+ System.out.print(stringValue + " ");
+ }
+ }
+
+ /**
+ * Determine what to print based on the token's type.
+ */
+ private String tokenToString(BaseToken token) {
+
+ String stringValue;
+ String tokenType = token.getClass().getSimpleName();
+ String tokenText = token.getCoveredText().toLowerCase();
+
+ switch(tokenType) {
+ case "ContractionToken":
+ stringValue = tokenText;
+ break;
+ case "NewlineToken":
+ stringValue = "";
+ break;
+ case "NumToken":
+ stringValue = "number_token";
+ break;
+ case "PunctuationToken":
+ stringValue = tokenText;
+ break;
+ case "SymbolToken":
+ stringValue = tokenText;
+ break;
+ case "WordToken":
+ stringValue = tokenText;
+ break;
+ default:
+ throw new IllegalArgumentException("Invalid token type: " + tokenType);
+ }
+
+ return stringValue;
+ }
+ }
+}
+