You are viewing a plain text version of this content. The canonical link for it is here.
Posted to commits@taverna.apache.org by bu...@apache.org on 2015/02/26 15:21:08 UTC
svn commit: r941547 - in /websites/staging/taverna/trunk: cgi-bin/ content/
content/introduction/taverna-in-use/medicine.html
Author: buildbot
Date: Thu Feb 26 14:21:08 2015
New Revision: 941547
Log:
Staging update by buildbot for taverna
Added:
websites/staging/taverna/trunk/content/introduction/taverna-in-use/medicine.html
Modified:
websites/staging/taverna/trunk/cgi-bin/ (props changed)
websites/staging/taverna/trunk/content/ (props changed)
Propchange: websites/staging/taverna/trunk/cgi-bin/
------------------------------------------------------------------------------
--- cms:source-revision (original)
+++ cms:source-revision Thu Feb 26 14:21:08 2015
@@ -1 +1 @@
-1662444
+1662452
Propchange: websites/staging/taverna/trunk/content/
------------------------------------------------------------------------------
--- cms:source-revision (original)
+++ cms:source-revision Thu Feb 26 14:21:08 2015
@@ -1 +1 @@
-1662444
+1662452
Added: websites/staging/taverna/trunk/content/introduction/taverna-in-use/medicine.html
==============================================================================
--- websites/staging/taverna/trunk/content/introduction/taverna-in-use/medicine.html (added)
+++ websites/staging/taverna/trunk/content/introduction/taverna-in-use/medicine.html Thu Feb 26 14:21:08 2015
@@ -0,0 +1,265 @@
+<!DOCTYPE html>
+<html lang="en">
+ <head>
+ <meta charset="utf-8">
+ <meta http-equiv="X-UA-Compatible" content="IE=edge">
+ <meta name="viewport" content="width=device-width, initial-scale=1">
+ <title>Apache Taverna - Medicine</title>
+
+ <meta http-equiv="Content-Type" content="text/html;charset=UTF-8">
+ <meta property="og:image" content="/img/taverna-logo-145x134.png" />
+
+ <link rel="shortcut icon" href="/favicon.ico">
+ <link rel="icon" type="image/png" sizes="145x134" href="/img/taverna-logo-145x134.png">
+ <link rel="apple-touch-icon" sizes="145x134" href="/img/taverna-logo-145x134.png">
+
+ <link rel="stylesheet" href="/lib/bootstrap/css/bootstrap.min.css">
+ <link rel="stylesheet" href="/lib/bootstrap/css/bootstrap-theme.min.css">
+ <link rel="stylesheet" href="/css/sticky-footer-navbar.css">
+ <link rel="stylesheet" href="/css/taverna.css">
+
+
+
+
+ <!-- Licensed to the Apache Software Foundation (ASF) under one or more contributor license agreements. See the NOTICE file distributed with this work for additional information regarding copyright ownership. The ASF licenses this file to you under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at . http://www.apache.org/licenses/LICENSE-2.0 . Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. -->
+
+ <!-- JSON-LD markup for Google Structured Data -->
+
+ <!-- generic JSON-LD for this page -->
+ <script type="application/ld+json">
+ {
+ "@context" : "http://schema.org",
+ "@type" : ["CreativeWork"],
+ "@id": "",
+ "name" : "Medicine",
+ "publisher" : {
+ "@type" : "Organization",
+ "url" : "http://www.apache.org/",
+ "name" : "The Apache Software Foundation (ASF)"
+ },
+ "license": {
+ "@type": "CreativeWork",
+ "@id": "http://www.apache.org/licenses/LICENSE-2.0",
+ "url": "http://www.apache.org/licenses/LICENSE-2.0",
+ "name": "Apache License, Version 2.0"
+ }
+ }
+</script>
+
+ </head>
+
+ <body>
+
+ <!-- Static navbar -->
+ <nav class="navbar navbar-default" role="navigation">
+ <div class="container">
+ <div class="navbar-header">
+ <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false" aria-controls="navbar">
+ <span class="sr-only">Toggle navigation</span>
+ <span class="icon-bar"></span>
+ <span class="icon-bar"></span>
+ <span class="icon-bar"></span>
+ </button>
+ <a class="navbar-brand" href="/"><img src="/img/taverna-logo-145x134.png" alt="">Apache Taverna</a>
+
+ </div>
+ <div id="navbar" class="navbar-collapse collapse">
+ <ul class="nav navbar-nav">
+ <li class="dropdown">
+ <a href="/introduction/" data-toggle="dropdown" role="button" aria-expanded="false">Introduction<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="/introduction/taverna-features">Taverna features</a></li>
+ <li><a href="/introduction/why-use-workflows">Why use workflows?</a></li>
+ <li><a href="/introduction/what-is-in-silico-experimentation">What is âin silicoâ experimentation?</a></li>
+ <li><a href="/introduction/what-is-a-workflow-management-system">What is a Workflow Management System?</a></li>
+ <li><a href="/introduction/how-can-taverna-help-me">How can Taverna help me?</a></li>
+ <li><a href="/introduction/services-in-taverna">Services in Taverna</a></li>
+ <li><a href="/introduction/related-projects">Related projects</a></li>
+ <li><a href="/introduction/chemistry-web-services">Chemistry-web-services</a></li>
+ <li><a href="/introduction/taverna-in-use">Taverna in use</a></li>
+ <li><a href="/introduction/works-with">Works with...</a></li>
+ <li><a href="/introduction/roadmap.html">Raod Map</a></li>
+ </ul>
+ </li>
+ <li class="dropdown">
+ <a href="/documentation" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Documentation<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="/documentation/glossary">Glossary</a></li>
+ <li><a href="/documentation/quick-start-guide">Quick start guide</a></li>
+ <li><a href="/documentation/components">Components</a></li>
+ <li><a href="/documentation/interaction">Interactions</a></li>
+ <li><a href="/documentation/tutorials">Tutorials</a></li>
+ <li><a href="/documentation/videos">Videos</a></li>
+ <li><a href="/documentation/example-workflows">Example workflows</a></li>
+ <li><a href="/documentation/service-sets">Service sets</a></li>
+ <li><a href="/documentation/provenance">Provenance management</a></li>
+ <li><a href="/documentation/command-line">command-line</a></li>
+ <li><a href="/documentation/server">Taverna Server</a></li>
+ <li><a href="/documentation/taverna-player">Taverna Player</a></li>
+ <li><a href="/documentation/plugins">Plugins</a></li>
+ <li><a href="/documentation/dataviewer-tool">DataViewer Tool</a></li>
+ <li><a href="/documentation/api-consumer-tool">API Consumer Tool</a></li>
+ <li><a href="/documentation/taverna-galaxy">Taverna 2-Galaxy</a></li>
+ <li><a href="/documentation/training-and-workshops">Training and workshops</a></li>
+ <li><a href="/documentation/web-service-developers">Web service developers</a></li>
+ </ul>
+ </li>
+ <li class="dropdown">
+ <a href="/download" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Download<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="/download">Which Taverna to use</a></li>
+ <li><a href="/download/workbench">TavernaWorkbench</a></li>
+ <li><a href="/download/language">Taverna's SCUFL2 Language</a></li>
+ <li><a href="/download/command-line-tool">Taverna Command Line</a></li>
+ <li><a href="/download/server">Taverna Server</a></li>
+ <li><a href="/documentation/plugins">Plugins</a></li>
+ <li><a href="/download/code">Source Code</a></li>
+ <li><a href="/download/maven">Maven Repository</a></li>
+ <li><a href="/download/system-requirements">System Requirements</a></li>
+ <li><a href="/download/pre-apache">Taverna 2.x (Pre-Apache)</a></li>
+ </ul>
+ </li>
+ <li class="dropdown">
+ <a href="/community" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Community<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="/community#mailinglists">Mailing Lists</a></li>
+ <li><a href="/community#contribute">Contribute</a></li>
+ <li><a href="/community#reportbugs">Report a Bug</a></li>
+ </ul>
+ </li>
+ </ul>
+
+ <form >
+
+
+ <!--<input type="submit" id="submit" value="Search">-->
+ </form>
+
+ <form class="navbar-form navbar-right" role="search"
+ name="search" id="search" action="http://www.google.com/search" method="get">
+ <input value="taverna.incubator.apache.org" name="sitesearch" type="hidden"/>
+ <div class="form-group input-group">
+ <input type="text" name="q" id="query" placeholder="Search" class="form-control">
+ <span class="input-group-btn">
+ <button type="submit" class="btn btn-default">Search</button>
+ </span>
+ </div>
+ </form>
+
+ <ul class="nav navbar-nav navbar-right">
+ <li class="dropdown">
+ <a href="http://www.apache.org/" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">ASF<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="http://www.apache.org/">Apache Software Foundation</a></li>
+ <li><a href="http://www.apache.org/foundation/how-it-works.html">How it works</a></li>
+ <li><a href="http://www.apache.org/foundation/thanks.html">Thanks</a></li>
+ <li><a href="http://www.apache.org/foundation/sponsorship.html">Become a Sponsor</a></li>
+ <li><a href="http://incubator.apache.org/projects/taverna.html">Taverna Incubation Status</a></li>
+ </ul>
+ </li>
+ </ul>
+ </div><!--/.nav-collapse -->
+ </div><!--/.container-->
+ </nav>
+
+
+ <div id="page" class="container">
+ <h1>Medicine</h1>
+ <div class="alert alert-info" role="alert"><p><span class="glyphicon glyphicon-info-sign" aria-hidden="true"></span>
+
+Taverna is transitioning to the Apache Incubator.
+This webpage reflects material not yet released under Apache Incubator.
+Instead it shows <a class="alert-link" href="http://www.taverna.org.uk/">taverna2</a> material that is expected to become part of the Apache Incubator project in the future.
+</div>
+
+
+ <div id="content"><p>Taverna is used by various projects and researchers in medicine:</p>
+<ul>
+<li><a href="#knowarc">Know-how Sharing Technology Based on ARC Services and Open Standards</a> (KnowARC) -
+ rapid iteration and large datasets on a grid for for medical imaging</li>
+<li><a href="/introduction/taverna-in-use/medical-imaging#miasgrid">Medical Imaging and Signals Grid</a> (MIASGrid) -
+ workflows for MRI and mammogram analysis</li>
+<li><a href="/introduction/related-projects#cagrid">caGrid</a> - cancer research</li>
+<li><a href="#eu-adr">EU-ADR</a> - detecting adverse drug reactions through the exploitation of clinical data from
+ electronic healthcare records</li>
+</ul>
+<p><a name="knowarc"></a></p>
+<h2 id="knowarc">KnowARC</h2>
+<p>The Grid-enabled Know-how Sharing Technology Based on ARC Services and Open Standards (KnowARC)
+ <a href="http://www.knowarc.eu/">project</a> is: </p>
+<blockquote>
+<p>a Sixth Framework Programme Specific Targeted Research Project, under
+Priority IST-2005-2.5.4 âAdvanced Grid Technologies, Systems and
+Servicesâ. The operative comencement date of the project is June 1,
+2006, and the planned duration is 3 years.</p>
+<p>The objectives of the project are:</p>
+<ul>
+<li>to create a novel, powerful Next Generation Grid middleware based on NorduGridâs
+ <a href="http://www.nordugrid.org/">ARC</a>, widely respected for its simplicity,
+ non-invasiveness and cost-efficiency;</li>
+<li>to promote Grid standardization and interoperability;</li>
+<li>to contribute to Grid technologies take-up, bridging the gaps between business and academia in Grid development</li>
+</ul>
+</blockquote>
+<p>The KnowARC team have adopted Taverna to specify their workflows.<br />
+They have also developed the <a href="/documentation/plugins#usecase_plugin">ARC plugin</a> for Taverna.</p>
+<p>The functionality of the ARC plugin has been <a href="http://www.knowarc.eu/demos/">demonstrated</a>
+ in the domain of medical imaging.</p>
+<p><a name="eu-adr"></a></p>
+<h2 id="eu-adr">EU-ADR</h2>
+<p>The <a href="http://www.eu-adr-project.com/">EU-ADR</a> project aims to develop an innovative computerised system to
+ detect adverse drug reactions (ADRs) through the exploitation of clinical data from electronic healthcare records (EHRs).
+This process will rely on the usage and development of various computational techniques to analyse the EHRs in order to
+ detect âsignalsâ (combination of drugs and suspected adverse events that warrant further investigation).
+These techniques will be made available as a set of secure Web services, combining secure HTTPS connection with
+ WS-Security user authentication.</p>
+<p>However, to obtain final readable results, the various services must work with each other, constructing one or more workflows.
+An interdisciplinary team of researchers, requiring a software application that enhances workflow development in
+ an elegant manner, will develop these workflows.
+The chosen platform is Taverna, which provides a very easy to use interface and strong core features for
+ Web services interconnection and management, improving researchersâ collaboration and general system functionality.
+Taverna will support the remaining system components and end-user applications.
+In the end, the project should demonstrate that scientific and clinical evidence could quickly and
+ directly be translated into patient safety and, thus, health benefit.</p>
+<p><a href="http://www.taverna.org.uk/pages/wp-content/uploads/2010/10/EUADR_project.pdf">Presentation slides</a>
+ by Pedro Lopes describe the use of Taverna by the EU-ADR project.</p></div>
+
+ </div>
+
+ <footer class="footer">
+ <div class="container">
+ <p id="copyright" class="text-muted">
+ Copyright © 2014-2015 The Apache Software Foundation, Licensed under the
+ <a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License, Version 2.0</a>.
+ Apache and the Apache feather logo are trademarks of The Apache Software Foundation.
+ </p>
+ </div>
+ </footer>
+
+
+
+ <script src="/lib/jquery/jquery-1.11.1.min.js"></script>
+<script src="/lib/bootstrap/js/bootstrap.min.js"></script>
+
+<script>
+ jQuery(function($) {
+ if($(window).width()>769){
+ $('.navbar .dropdown').hover(function() {
+ $(this).find('.dropdown-menu').first().stop(true, true).delay(250).slideDown();
+
+ }, function() {
+ $(this).find('.dropdown-menu').first().stop(true, true).delay(100).slideUp();
+
+ });
+
+ $('.navbar .dropdown > a').click(function(){
+ location.href = this.href;
+ });
+
+ }
+ });
+</script>
+
+
+ </body>
+</html>
\ No newline at end of file