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Posted to dev@ctakes.apache.org by "Kumar, Avanish" <av...@optum.com> on 2017/06/06 14:23:44 UTC
jcas to json error
Hi,
I am trying to get the output in Json. I tried it by doing it like this:
But got errors. Can anyone please tell me what is wrong with this code.
[cid:image002.png@01D2DEFE.94FB1CB0]
[cid:image001.png@01D2DEFE.73B1D760]
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RE: jcas to json error
Posted by "Kumar, Avanish" <av...@optum.com>.
Hi Richard,
You were right I was mixing the versions of uimaj-core and uimaj-json.
The error got resolved when I changed their versions to 2.8.1.
-----Original Message-----
From: Richard Eckart de Castilho [mailto:rec@apache.org]
Sent: Thursday, June 08, 2017 3:26 AM
To: dev@ctakes.apache.org
Subject: Re: jcas to json error
On 07.06.2017, at 07:33, Kumar, Avanish <av...@optum.com> wrote:
>
> Exception in thread "main" java.lang.NoSuchMethodError: org.apache.uima.cas.impl.TypeImpl.getSuperType()Lorg/apache/uima/cas/impl/TypeImpl;
Could it be that you are mixing JARs from different version of UIMA, e.g. uimaj-core 2.7.0 with uimaj-json 2.10.0 or something like that?
Cheers,
-- Richard
This e-mail, including attachments, may include confidential and/or
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Re: jcas to json error
Posted by Richard Eckart de Castilho <re...@apache.org>.
On 07.06.2017, at 07:33, Kumar, Avanish <av...@optum.com> wrote:
>
> Exception in thread "main" java.lang.NoSuchMethodError: org.apache.uima.cas.impl.TypeImpl.getSuperType()Lorg/apache/uima/cas/impl/TypeImpl;
Could it be that you are mixing JARs from different version of UIMA, e.g. uimaj-core 2.7.0 with uimaj-json 2.10.0 or something like that?
Cheers,
-- Richard
RE: jcas to json error
Posted by "Finan, Sean" <Se...@childrens.harvard.edu>.
Hi Avanish,
Thanks for sending the code snippet. Since it is straight out of the Uima 2.7 reference for jsoncasserializer https://uima.apache.org/d/uimaj-2.7.0/references.html#ugr.ref.json.usage
you should definitely expect your code to work.
Assuming that I am correctly following the code,
The initial call in JsonCasSerializer that claims to start the problem:
http://svn.apache.org/viewvc/uima/uimaj/tags/uimaj-2.9.0/uimaj-json/src/main/java/org/apache/uima/json/JsonCasSerializer.java?view=markup#l835
The call is to TypeImpl.getSuperType();
http://svn.apache.org/viewvc/uima/uimaj/tags/uimaj-2.9.0/uimaj-core/src/main/java/org/apache/uima/cas/impl/TypeImpl.java?view=markup#l74
That method just returns a value from two methods in TypeSystemImpl:
return this.ts.ll_getTypeForCode(this.ts.ll_getParentType(this.code));
The code for the nested call to method ll_getParentType(this.code) in TypeSystemImpl:
http://svn.apache.org/viewvc/uima/uimaj/tags/uimaj-2.9.0/uimaj-core/src/main/java/org/apache/uima/cas/impl/TypeSystemImpl.java?view=markup#l520
And the code for the outer call to method ll_getTypeForCode( int ) in TypeSystemImpl:
http://svn.apache.org/viewvc/uima/uimaj/tags/uimaj-2.9.0/uimaj-core/src/main/java/org/apache/uima/cas/impl/TypeSystemImpl.java?view=markup#l1439
All of the required methods appear to be present, so I don't know why java is throwing that exception.
At any rate, this is all uima code, not ctakes. So I suggest that you post it on one of the uima mailing lists. Somebody there may have an answer.
https://uima.apache.org/mail-lists.html
Sean
-----Original Message-----
From: Kumar, Avanish [mailto:avanish.kumar@optum.com]
Sent: Wednesday, June 07, 2017 1:33 AM
To: dev@ctakes.apache.org
Subject: RE: jcas to json error
Hi Sean,
The code was:
JsonCasSerializer jcs = new JsonCasSerializer();
jcs.setPrettyPrint(true); // do some configuration
StringWriter sw = new StringWriter();
jcs.serialize(jcas.getCas(), sw); // serialize into sw
and the error was:
Exception in thread "main" java.lang.NoSuchMethodError: org.apache.uima.cas.impl.TypeImpl.getSuperType()Lorg/apache/uima/cas/impl/TypeImpl;
at org.apache.uima.json.JsonCasSerializer$JsonDocSerializer.collectUsedSubtypes(JsonCasSerializer.java:842)
at org.apache.uima.json.JsonCasSerializer$JsonDocSerializer.serializeJsonLdContext(JsonCasSerializer.java:731)
at org.apache.uima.json.JsonCasSerializer$JsonDocSerializer.writeFeatureStructures(JsonCasSerializer.java:545)
at org.apache.uima.cas.impl.CasSerializerSupport$CasDocSerializer.serialize(CasSerializerSupport.java:439)
at org.apache.uima.json.JsonCasSerializer.serialize(JsonCasSerializer.java:337)
at org.apache.uima.json.JsonCasSerializer.serialize(JsonCasSerializer.java:318)
at org.apache.uima.json.JsonCasSerializer.serialize(JsonCasSerializer.java:308)
at Main.result(Main.java:62)
at Main.main(Main.java:96)
-----Original Message-----
From: Finan, Sean [mailto:Sean.Finan@childrens.harvard.edu]
Sent: Tuesday, June 06, 2017 8:37 PM
To: dev@ctakes.apache.org
Subject: RE: jcas to json error
Hi Avanish,
I think that Apache email services do not allow markups, embedded images or attachments. Your images didn't come through for me. Can you paste the code as text? If it is online somewhere public (e.g. github) you can add a link to the repository for people to inspect.
Thanks,
Sean
From: Kumar, Avanish [mailto:avanish.kumar@optum.com]
Sent: Tuesday, June 06, 2017 10:24 AM
To: dev@ctakes.apache.org
Subject: jcas to json error
Hi,
I am trying to get the output in Json. I tried it by doing it like this:
But got errors. Can anyone please tell me what is wrong with this code.
[cid:image002.png@01D2DEFE.94FB1CB0]
[cid:image001.png@01D2DEFE.73B1D760]
This e-mail, including attachments, may include confidential and/or proprietary information, and may be used only by the person or entity to which it is addressed. If the reader of this e-mail is not the intended recipient or his or her authorized agent, the reader is hereby notified that any dissemination, distribution or copying of this e-mail is prohibited. If you have received this e-mail in error, please notify the sender by replying to this message and delete this e-mail immediately.
This e-mail, including attachments, may include confidential and/or proprietary information, and may be used only by the person or entity to which it is addressed. If the reader of this e-mail is not the intended recipient or his or her authorized agent, the reader is hereby notified that any dissemination, distribution or copying of this e-mail is prohibited. If you have received this e-mail in error, please notify the sender by replying to this message and delete this e-mail immediately.
RE: jcas to json error
Posted by "Kumar, Avanish" <av...@optum.com>.
Hi Sean,
The code was:
JsonCasSerializer jcs = new JsonCasSerializer();
jcs.setPrettyPrint(true); // do some configuration
StringWriter sw = new StringWriter();
jcs.serialize(jcas.getCas(), sw); // serialize into sw
and the error was:
Exception in thread "main" java.lang.NoSuchMethodError: org.apache.uima.cas.impl.TypeImpl.getSuperType()Lorg/apache/uima/cas/impl/TypeImpl;
at org.apache.uima.json.JsonCasSerializer$JsonDocSerializer.collectUsedSubtypes(JsonCasSerializer.java:842)
at org.apache.uima.json.JsonCasSerializer$JsonDocSerializer.serializeJsonLdContext(JsonCasSerializer.java:731)
at org.apache.uima.json.JsonCasSerializer$JsonDocSerializer.writeFeatureStructures(JsonCasSerializer.java:545)
at org.apache.uima.cas.impl.CasSerializerSupport$CasDocSerializer.serialize(CasSerializerSupport.java:439)
at org.apache.uima.json.JsonCasSerializer.serialize(JsonCasSerializer.java:337)
at org.apache.uima.json.JsonCasSerializer.serialize(JsonCasSerializer.java:318)
at org.apache.uima.json.JsonCasSerializer.serialize(JsonCasSerializer.java:308)
at Main.result(Main.java:62)
at Main.main(Main.java:96)
-----Original Message-----
From: Finan, Sean [mailto:Sean.Finan@childrens.harvard.edu]
Sent: Tuesday, June 06, 2017 8:37 PM
To: dev@ctakes.apache.org
Subject: RE: jcas to json error
Hi Avanish,
I think that Apache email services do not allow markups, embedded images or attachments. Your images didn't come through for me. Can you paste the code as text? If it is online somewhere public (e.g. github) you can add a link to the repository for people to inspect.
Thanks,
Sean
From: Kumar, Avanish [mailto:avanish.kumar@optum.com]
Sent: Tuesday, June 06, 2017 10:24 AM
To: dev@ctakes.apache.org
Subject: jcas to json error
Hi,
I am trying to get the output in Json. I tried it by doing it like this:
But got errors. Can anyone please tell me what is wrong with this code.
[cid:image002.png@01D2DEFE.94FB1CB0]
[cid:image001.png@01D2DEFE.73B1D760]
This e-mail, including attachments, may include confidential and/or proprietary information, and may be used only by the person or entity to which it is addressed. If the reader of this e-mail is not the intended recipient or his or her authorized agent, the reader is hereby notified that any dissemination, distribution or copying of this e-mail is prohibited. If you have received this e-mail in error, please notify the sender by replying to this message and delete this e-mail immediately.
This e-mail, including attachments, may include confidential and/or
proprietary information, and may be used only by the person or entity
to which it is addressed. If the reader of this e-mail is not the intended
recipient or his or her authorized agent, the reader is hereby notified
that any dissemination, distribution or copying of this e-mail is
prohibited. If you have received this e-mail in error, please notify the
sender by replying to this message and delete this e-mail immediately.
RE: jcas to json error
Posted by "Finan, Sean" <Se...@childrens.harvard.edu>.
Hi Avanish,
I think that Apache email services do not allow markups, embedded images or attachments. Your images didn't come through for me. Can you paste the code as text? If it is online somewhere public (e.g. github) you can add a link to the repository for people to inspect.
Thanks,
Sean
From: Kumar, Avanish [mailto:avanish.kumar@optum.com]
Sent: Tuesday, June 06, 2017 10:24 AM
To: dev@ctakes.apache.org
Subject: jcas to json error
Hi,
I am trying to get the output in Json. I tried it by doing it like this:
But got errors. Can anyone please tell me what is wrong with this code.
[cid:image002.png@01D2DEFE.94FB1CB0]
[cid:image001.png@01D2DEFE.73B1D760]
This e-mail, including attachments, may include confidential and/or
proprietary information, and may be used only by the person or entity
to which it is addressed. If the reader of this e-mail is not the intended
recipient or his or her authorized agent, the reader is hereby notified
that any dissemination, distribution or copying of this e-mail is
prohibited. If you have received this e-mail in error, please notify the
sender by replying to this message and delete this e-mail immediately.