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Posted to issues@beam.apache.org by "Kenneth Knowles (Jira)" <ji...@apache.org> on 2021/03/25 18:29:00 UTC
[jira] [Updated] (BEAM-10899) test_FhirIO_exportFhirResourcesGcs
flake with OOM
[ https://issues.apache.org/jira/browse/BEAM-10899?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Kenneth Knowles updated BEAM-10899:
-----------------------------------
Priority: P1 (was: P3)
> test_FhirIO_exportFhirResourcesGcs flake with OOM
> -------------------------------------------------
>
> Key: BEAM-10899
> URL: https://issues.apache.org/jira/browse/BEAM-10899
> Project: Beam
> Issue Type: Bug
> Components: io-java-gcp, test-failures
> Reporter: Tyson Hamilton
> Priority: P1
> Labels: flake
> Attachments: image-2020-09-15-09-48-51-287.png
>
>
> The `test_FhirIO_exportFhirResourcesGcs` test has failed with OOMs several times recently. Examples,
>
> [https://ci-beam.apache.org/view/PostCommit/job/beam_PostCommit_Java/6597/testReport/org.apache.beam.sdk.io.gcp.healthcare/FhirIOLROIT/test_FhirIO_exportFhirResourcesGcs/]
> [https://ci-beam.apache.org/view/PostCommit/job/beam_PostCommit_Java/6596/testReport/org.apache.beam.sdk.io.gcp.healthcare/FhirIOLROIT/test_FhirIO_exportFhirResourcesGcs/]
>
> Error:
>
> {code:java}
> Error Message
> org.apache.beam.sdk.Pipeline$PipelineExecutionException: java.lang.OutOfMemoryError: Java heap space
> Stacktrace
> org.apache.beam.sdk.Pipeline$PipelineExecutionException: java.lang.OutOfMemoryError: Java heap space
> at org.apache.beam.runners.direct.DirectRunner$DirectPipelineResult.waitUntilFinish(DirectRunner.java:353)
> at org.apache.beam.runners.direct.DirectRunner$DirectPipelineResult.waitUntilFinish(DirectRunner.java:321)
> at org.apache.beam.runners.direct.DirectRunner.run(DirectRunner.java:216)
> at org.apache.beam.runners.direct.DirectRunner.run(DirectRunner.java:67)
> at org.apache.beam.sdk.Pipeline.run(Pipeline.java:317)
> at org.apache.beam.sdk.testing.TestPipeline.run(TestPipeline.java:350)
> at org.apache.beam.sdk.testing.TestPipeline.run(TestPipeline.java:331)
> at org.apache.beam.sdk.io.gcp.healthcare.FhirIOLROIT.test_FhirIO_exportFhirResourcesGcs(FhirIOLROIT.java:91)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:498)
> at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
> at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
> at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
> at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
> at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
> at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27)
> at org.apache.beam.sdk.testing.TestPipeline$1.evaluate(TestPipeline.java:319)
> at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:305)
> at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
> at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:365)
> at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
> at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
> at org.junit.runners.ParentRunner$4.run(ParentRunner.java:330)
> at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:78)
> at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:328)
> at org.junit.runners.ParentRunner.access$100(ParentRunner.java:65)
> at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:292)
> at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27)
> at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:305)
> at org.junit.runners.ParentRunner.run(ParentRunner.java:412)
> at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecutor.runTestClass(JUnitTestClassExecutor.java:110)
> at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecutor.execute(JUnitTestClassExecutor.java:58)
> at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecutor.execute(JUnitTestClassExecutor.java:38)
> at org.gradle.api.internal.tasks.testing.junit.AbstractJUnitTestClassProcessor.processTestClass(AbstractJUnitTestClassProcessor.java:62)
> at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.processTestClass(SuiteTestClassProcessor.java:51)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:498)
> at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36)
> at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
> at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33)
> at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94)
> at com.sun.proxy.$Proxy2.processTestClass(Unknown Source)
> at org.gradle.api.internal.tasks.testing.worker.TestWorker.processTestClass(TestWorker.java:119)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:498)
> at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36)
> at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
> at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:182)
> at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:164)
> at org.gradle.internal.remote.internal.hub.MessageHub$Handler.run(MessageHub.java:414)
> at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:64)
> at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:48)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
> at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:56)
> at java.lang.Thread.run(Thread.java:748)
> Caused by: java.lang.OutOfMemoryError: Java heap space
> at com.google.api.client.googleapis.media.MediaHttpUploader.buildContentChunk(MediaHttpUploader.java:608)
> at com.google.api.client.googleapis.media.MediaHttpUploader.resumableUpload(MediaHttpUploader.java:407)
> at com.google.api.client.googleapis.media.MediaHttpUploader.upload(MediaHttpUploader.java:335)
> at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:550)
> at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:474)
> at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:591)
> at com.google.cloud.hadoop.util.AbstractGoogleAsyncWriteChannel$UploadOperation.call(AbstractGoogleAsyncWriteChannel.java:107)
> Standard Error
> Sep 14, 2020 6:40:06 PM org.apache.beam.runners.dataflow.options.DataflowPipelineOptions$StagingLocationFactory create
> INFO: No stagingLocation provided, falling back to gcpTempLocation
> Sep 14, 2020 6:40:06 PM org.apache.beam.runners.dataflow.DataflowRunner fromOptions
> INFO: PipelineOptions.filesToStage was not specified. Defaulting to files from the classpath: will stage 183 files. Enable logging at DEBUG level to see which files will be staged.
> Sep 14, 2020 6:40:06 PM org.apache.beam.runners.d
> ...[truncated 129361 chars]...
> eJob logTerminalState
> INFO: Job 2020-09-14_11_40_11-3828548869464058478 finished with status DONE.
> Sep 14, 2020 6:44:01 PM org.apache.beam.runners.dataflow.TestDataflowRunner checkForPAssertSuccess
> INFO: Success result for Dataflow job 2020-09-14_11_40_11-3828548869464058478. Found 0 success, 0 failures out of 0 expected assertions.
> Sep 14, 2020 6:44:01 PM com.google.api.client.googleapis.services.AbstractGoogleClient <init>
> WARNING: Application name is not set. Call Builder#setApplicationName.
> {code}
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