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Posted to commits@taverna.apache.org by gn...@apache.org on 2016/09/23 21:16:44 UTC
svn commit: r1762093 -
/incubator/taverna/site/trunk/content/community/references.md
Author: gnaylor
Date: Fri Sep 23 21:16:44 2016
New Revision: 1762093
URL: http://svn.apache.org/viewvc?rev=1762093&view=rev
Log:
Add new ref Auto vs Man Prov Ext and resort 2015
Modified:
incubator/taverna/site/trunk/content/community/references.md
Modified: incubator/taverna/site/trunk/content/community/references.md
URL: http://svn.apache.org/viewvc/incubator/taverna/site/trunk/content/community/references.md?rev=1762093&r1=1762092&r2=1762093&view=diff
==============================================================================
--- incubator/taverna/site/trunk/content/community/references.md (original)
+++ incubator/taverna/site/trunk/content/community/references.md Fri Sep 23 21:16:44 2016
@@ -24,6 +24,9 @@ See also [publications](/community/publi
## 2016
+Pinar Alper, Khalid Belhajjame, Carole A. Goble. (2016). **Automatic vs Manual Provenance Abstractions: Mind the Gap.**
+Preprint accepted to the 2016 workshop on the Theory and Applications of Provenance, TAPP 2016. [arXiv:1605.06669v1](https://arxiv.org/abs/1605.06669v1) [cs.SE]
+[[download PDF]](https://www.usenix.org/system/files/conference/tapp16/tapp16-paper-alper.pdf)
Arzu Tugce Guler, Cathelijn J. F. Waaijer, Magnus Palmblad. (2016).
**Scientific workflows for bibliometrics.**
@@ -38,6 +41,11 @@ In: _Annals of the Rheumatic Diseases_ 2
## 2015
+Edward Baker, Ben W. Price, S. D. Rycroft1, Jon Hill, Vincent S. Smith. (2015).
+**BioAcoustica: a free and open repository and analysis platform for bioacoustics**
+In *Database* **2015**(bav054).
+[doi:10.1093/database/bav054](http://dx.doi.org/10.1093/database/bav054)
+
Khalid Belhajjame, Jun Zhao, Daniel Garijo, Matthew Gamble, Kristina Hettne, Raúl Palma,
Eleni Mina, Oscar Corcho, José Manuel Gómez-Pérez, Sean Bechhofer,
Graham Klyne, Carole Goble. (2015).
@@ -45,34 +53,28 @@ Graham Klyne, Carole Goble. (2015).
In: *Journal of Web Semantics: Scence, Services and Agents on the World Wide Web*. **32**: 16–42.
[doi:10.1016/j.websem.2015.01.003](http://dx.doi.org/10.1016/j.websem.2015.01.003)
-Sonja Holl, Yassene Mohammed, Olav Zimmermann, Magnus Palmblad. (2015).
-**Scientific workflow optimization for improved peptide and protein identification.**
-In: *BMC Bioinformatics* **16**(1): 1–13.
-[doi:10.1186/s12859-015-0714-x](http://dx.doi.org/10.1186/s12859-015-0714-x)
-
-Steve O’Hagan, Douglas B. Kell. (2015).
-**Software review: the KNIME workflow environment and its applications in genetic programming and machine learning**.
-In: *Genetic Programming and Evolvable Machines* **16**(3) 387–391.
-[doi:10.1007/s10710-015-9247-3](http://dx.doi.org/10.1007/s10710-015-9247-3)
-[[preprint]](http://www.taverna.org.uk/pages/wp-content/uploads/2015/2015-Hagan-Kell-KNIME-software-review.pdf)
-
Renato De Giovanni, Alan R. Williams, Vera Hernández Ernst, Robert Kulawik, Francisco Quevedo Fernandez,
Alex R. Hardisty. (2015).
**ENM Components: a new set of web service-based workflow components for ecological niche modelling**.
In: *Ecography* **39**(4).
[doi:10.1111/ecog.01552](http://dx.doi.org/10.1111/ecog.01552)
-Edward Baker, Ben W. Price, S. D. Rycroft1, Jon Hill, Vincent S. Smith. (2015).
-**BioAcoustica: a free and open repository and analysis platform for bioacoustics**
-In *Database* **2015**(bav054).
-[doi:10.1093/database/bav054](http://dx.doi.org/10.1093/database/bav054)
+Susana Sánchez Expósito, Pablo Martín, Jose Enrique Ruíz, Lourdes Verdes-Montenegro, Julian Garrido,
+Raül Sirvent Pardell, Antonio Ruíz Falcó, Rosa Badia. (2015).
+**Web services as building blocks for Science Gateways in Astrophysics**.
+At: _7th International Workshop on Science Gateways (IWSG) 2015_
+[doi:10.1109/IWSG.2015.7](http://dx.doi.org/10.1109/IWSG.2015.7)
+[[pdf]](http://amiga.iaa.es/FCKeditor/UserFiles/File/BuildingBlocks.pdf)
-Yassene Mohammed, Christoph H. Borchers. (2015).
-**An extensive library of surrogate peptides for all human proteins**
-_Journal of Proteomics_ **129**: 93–97.
-[doi:10.1016/j.jprot.2015.07.025](http://dx.doi.org/10.1016/j.jprot.2015.07.025)
-[[researchgate]](https://www.researchgate.net/publication/280602358_An_Extensive_Library_of_Surrogate_Peptides_for_all_Human_Proteins)
-_preprint not currently available_
+Sonja Holl, Yassene Mohammed, Olav Zimmermann, Magnus Palmblad. (2015).
+**Scientific workflow optimization for improved peptide and protein identification.**
+In: *BMC Bioinformatics* **16**(1): 1–13.
+[doi:10.1186/s12859-015-0714-x](http://dx.doi.org/10.1186/s12859-015-0714-x)
+
+Jeremy Leipzig. (2015).
+**A review of bioinformatic pipeline frameworks**.
+In: _Briefings in bioinformatics_ (2016) 1–7 bbw020.
+[doi:10.1093/bib/bbw020](http://dx.doi.org/10.1093/bib/bbw020)
Ji Liu, Esther Pacitti, Patrick Valduriez, Marta Mattoso. (2015).
**A Survey of Data-Intensive Scientific Workflow Management**
@@ -81,24 +83,24 @@ In: _Journal of Grid Computing_ **13**:
[[pdf]](http://www-sop.inria.fr/members/Patrick.Valduriez/pmwiki/Patrick/uploads//Publications/jogc2015)
[[researchgate]](https://www.researchgate.net/publication/304292492_A_Survey_on_Scheduling_Workflows_in_Cloud_Environment)
-
-Susana Sánchez Expósito, Pablo Martín, Jose Enrique Ruíz, Lourdes Verdes-Montenegro, Julian Garrido,
-Raül Sirvent Pardell, Antonio Ruíz Falcó, Rosa Badia. (2015).
-**Web services as building blocks for Science Gateways in Astrophysics**.
-At: _7th International Workshop on Science Gateways (IWSG) 2015_
-[doi:10.1109/IWSG.2015.7](http://dx.doi.org/10.1109/IWSG.2015.7)
-[[pdf]](http://amiga.iaa.es/FCKeditor/UserFiles/File/BuildingBlocks.pdf)
-
Fabrizio Marozzo, Domenico Talia, Paolo Trunfio. (2015).
**JS4Cloud: script-based workflow programming for scalable data analysis on cloud platforms**
In: *Concurrency and Computation: Practice and Experience*. **27**(17)" 5214–5237.
[doi:10.1002/cpe.3563](http://dx.doi.org/10.1002/cpe.3563)
[[researchgate]](https://www.researchgate.net/publication/280971659_JS4Cloud_Script-based_workflow_programming_for_scalable_data_analysis_on_cloud_platforms)
-Jeremy Leipzig. (2015).
-**A review of bioinformatic pipeline frameworks**.
-In: _Briefings in bioinformatics_ (2016) 1–7 bbw020.
-[doi:10.1093/bib/bbw020](http://dx.doi.org/10.1093/bib/bbw020)
+Yassene Mohammed, Christoph H. Borchers. (2015).
+**An extensive library of surrogate peptides for all human proteins**
+_Journal of Proteomics_ **129**: 93–97.
+[doi:10.1016/j.jprot.2015.07.025](http://dx.doi.org/10.1016/j.jprot.2015.07.025)
+[[researchgate]](https://www.researchgate.net/publication/280602358_An_Extensive_Library_of_Surrogate_Peptides_for_all_Human_Proteins)
+_preprint not currently available_
+
+Steve O’Hagan, Douglas B. Kell. (2015).
+**Software review: the KNIME workflow environment and its applications in genetic programming and machine learning**.
+In: *Genetic Programming and Evolvable Machines* **16**(3) 387–391.
+[doi:10.1007/s10710-015-9247-3](http://dx.doi.org/10.1007/s10710-015-9247-3)
+[[preprint]](http://www.taverna.org.uk/pages/wp-content/uploads/2015/2015-Hagan-Kell-KNIME-software-review.pdf)
## 2014