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Posted to issues@madlib.apache.org by "Enzo Mar (JIRA)" <ji...@apache.org> on 2016/10/01 14:59:20 UTC
[jira] [Updated] (MADLIB-1027) Error installing 1.9.1 sources on
PostgreSQL9.6 and OSX
[ https://issues.apache.org/jira/browse/MADLIB-1027?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Enzo Mar updated MADLIB-1027:
-----------------------------
Description:
I’ve tried to install the great MAdlib 1.9.1 form sources on my PostgreSQL9.6 on OSX Sierra. I’m using Anaconda Python 3.5.2.
make stops with error due to TestIfNoUTF8BOM.py (see below).
x$ cmake ..
-- The C compiler identification is AppleClang 8.0.0.8000038
-- The CXX compiler identification is AppleClang 8.0.0.8000038
-- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/gcc
-- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/g++
-- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Boost version: 1.61.0
-- Found PythonInterp: /Users/e/anaconda/bin/python (found version "3.5.2")
-- Found PostgreSQL: /Applications/Postgres.app/Contents/Versions/9.6/bin/postgres
-- Found PostgreSQL_9_6: /Applications/Postgres.app/Contents/Versions/9.6/bin/postgres
>> Adding PostgreSQL 9.6 (x86_64) to target list...
-- Could NOT find Greenplum (missing: GREENPLUM_EXECUTABLE)
-- Could NOT find HAWQ (missing: HAWQ_EXECUTABLE)
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/e/CloudDrive/dev/gitlib/madlib-master/build
e-mac:build e$ make
Scanning dependencies of target sqlFiles
[ 0%] Built target sqlFiles
Scanning dependencies of target EP_eigen
[ 0%] Creating directories for 'EP_eigen'
[ 0%] Performing download step (download, verify and extract) for 'EP_eigen'
-- downloading...
src='https://github.com/madlib/eigen/archive/branches/3.2.tar.gz'
dst='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/downloads/3.2.tar.gz'
timeout='none'
-- Downloading... done
-- extracting...
src='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/downloads/3.2.tar.gz'
dst='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/src/EP_eigen'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 0%] No patch step for 'EP_eigen'
[ 0%] No update step for 'EP_eigen'
[ 0%] Performing configure step for 'EP_eigen'
Ignored: cmake -GUnix Makefiles /Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/src/EP_eigen
[ 1%] Performing build step for 'EP_eigen'
Ignored: make
[ 1%] Performing install step for 'EP_eigen'
Ignored: make
[ 1%] Completed 'EP_eigen'
[ 1%] Built target EP_eigen
Scanning dependencies of target EP_pyxb
[ 1%] Creating directories for 'EP_pyxb'
[ 1%] Performing download step (download, verify and extract) for 'EP_pyxb'
-- downloading...
src='http://sourceforge.net/projects/pyxb/files/PyXB-1.2.4.tar.gz'
dst='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/downloads/PyXB-1.2.4.tar.gz'
timeout='none'
-- [download 0% complete]
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-- verifying file...
file='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/downloads/PyXB-1.2.4.tar.gz'
-- Downloading... done
-- extracting...
src='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/downloads/PyXB-1.2.4.tar.gz'
dst='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/src/EP_pyxb'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 1%] Performing patch step for 'EP_pyxb'
patching file setup.py
PyXB: Removing GPL component from code base
[ 1%] No update step for 'EP_pyxb'
[ 1%] No configure step for 'EP_pyxb'
[ 2%] No build step for 'EP_pyxb'
[ 2%] Performing install step for 'EP_pyxb'
[ 2%] Completed 'EP_pyxb'
[ 2%] Built target EP_pyxb
Scanning dependencies of target pythonFiles
[ 2%] Built target pythonFiles
Scanning dependencies of target madlibPatches
[ 2%] Built target madlibPatches
Scanning dependencies of target madpackFiles
[ 2%] Copying __init__.py.
[ 2%] Copying argparse.py.
[ 3%] Copying configyml.py.
[ 3%] Copying madpack.py.
[ 3%] Copying sort-module.py.
[ 3%] Copying upgrade_util.py.
[ 3%] Copying yaml/__init__.py.
[ 3%] Copying yaml/composer.py.
[ 3%] Copying yaml/constructor.py.
[ 3%] Copying yaml/cyaml.py.
[ 4%] Copying yaml/dumper.py.
[ 4%] Copying yaml/emitter.py.
[ 4%] Copying yaml/error.py.
[ 4%] Copying yaml/events.py.
[ 4%] Copying yaml/loader.py.
[ 4%] Copying yaml/nodes.py.
[ 4%] Copying yaml/parser.py.
[ 4%] Copying yaml/reader.py.
[ 5%] Copying yaml/representer.py.
[ 5%] Copying yaml/resolver.py.
[ 5%] Copying yaml/scanner.py.
[ 5%] Copying yaml/serializer.py.
[ 5%] Copying yaml/tokens.py.
[ 5%] Copying changelist.yaml.
[ 5%] Copying changelist_1.0_1.9.1.yaml.
[ 7%] Copying changelist_1.1_1.9.1.yaml.
[ 7%] Copying changelist_1.2_1.9.1.yaml.
[ 7%] Copying changelist_1.3_1.9.1.yaml.
[ 7%] Copying changelist_1.4.1_1.9.1.yaml.
[ 7%] Copying changelist_1.4_1.9.1.yaml.
[ 7%] Copying changelist_1.5_1.9.1.yaml.
[ 7%] Copying changelist_1.6.0S_1.9.1.yaml.
[ 7%] Copying changelist_1.6_1.9.1.yaml.
[ 8%] Copying changelist_1.7.1_1.9.1.yaml.
[ 8%] Copying changelist_1.7_1.9.1.yaml.
[ 8%] Copying changelist_1.8_1.9.1.yaml.
[ 8%] Built target madpackFiles
Scanning dependencies of target binaryFiles
[ 8%] Copying madpack.
[ 8%] Built target binaryFiles
Scanning dependencies of target configFiles
[ 8%] Copying Modules.yml.
[ 8%] Copying Ports.yml.
[ 8%] Copying Version.yml.
[ 8%] Built target configFiles
Scanning dependencies of target sqlFiles_postgresql
[ 8%] Validating and copying assoc_rules/assoc_rules.sql_in.
File "../../../../cmake/TestIfNoUTF8BOM.py", line 30
print 'Detected byte-order mark (%s) in file "%s".' % (BOM, argv[1])
^
SyntaxError: invalid syntax
make[2]: *** [src/ports/postgres/modules/assoc_rules/assoc_rules.sql_in] Error 1
make[1]: *** [src/ports/postgres/CMakeFiles/sqlFiles_postgresql.dir/all] Error 2
make: *** [all] Error 2
Enzo
enzo@insightsfromdata.com
was:
I’ve tried to install the great MAdlib 1.9.1 on my PostgreSQL9.6 on OSX Sierra. I’m using Anaconda Python 3.5.2.
See error TestIfNoUTF8BOM.py below.
x$ cmake ..
-- The C compiler identification is AppleClang 8.0.0.8000038
-- The CXX compiler identification is AppleClang 8.0.0.8000038
-- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/gcc
-- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/g++
-- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Boost version: 1.61.0
-- Found PythonInterp: /Users/e/anaconda/bin/python (found version "3.5.2")
-- Found PostgreSQL: /Applications/Postgres.app/Contents/Versions/9.6/bin/postgres
-- Found PostgreSQL_9_6: /Applications/Postgres.app/Contents/Versions/9.6/bin/postgres
>> Adding PostgreSQL 9.6 (x86_64) to target list...
-- Could NOT find Greenplum (missing: GREENPLUM_EXECUTABLE)
-- Could NOT find HAWQ (missing: HAWQ_EXECUTABLE)
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/e/CloudDrive/dev/gitlib/madlib-master/build
e-mac:build e$ make
Scanning dependencies of target sqlFiles
[ 0%] Built target sqlFiles
Scanning dependencies of target EP_eigen
[ 0%] Creating directories for 'EP_eigen'
[ 0%] Performing download step (download, verify and extract) for 'EP_eigen'
-- downloading...
src='https://github.com/madlib/eigen/archive/branches/3.2.tar.gz'
dst='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/downloads/3.2.tar.gz'
timeout='none'
-- Downloading... done
-- extracting...
src='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/downloads/3.2.tar.gz'
dst='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/src/EP_eigen'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 0%] No patch step for 'EP_eigen'
[ 0%] No update step for 'EP_eigen'
[ 0%] Performing configure step for 'EP_eigen'
Ignored: cmake -GUnix Makefiles /Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/src/EP_eigen
[ 1%] Performing build step for 'EP_eigen'
Ignored: make
[ 1%] Performing install step for 'EP_eigen'
Ignored: make
[ 1%] Completed 'EP_eigen'
[ 1%] Built target EP_eigen
Scanning dependencies of target EP_pyxb
[ 1%] Creating directories for 'EP_pyxb'
[ 1%] Performing download step (download, verify and extract) for 'EP_pyxb'
-- downloading...
src='http://sourceforge.net/projects/pyxb/files/PyXB-1.2.4.tar.gz'
dst='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/downloads/PyXB-1.2.4.tar.gz'
timeout='none'
-- [download 0% complete]
-- [download 1% complete]
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-- verifying file...
file='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/downloads/PyXB-1.2.4.tar.gz'
-- Downloading... done
-- extracting...
src='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/downloads/PyXB-1.2.4.tar.gz'
dst='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/src/EP_pyxb'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 1%] Performing patch step for 'EP_pyxb'
patching file setup.py
PyXB: Removing GPL component from code base
[ 1%] No update step for 'EP_pyxb'
[ 1%] No configure step for 'EP_pyxb'
[ 2%] No build step for 'EP_pyxb'
[ 2%] Performing install step for 'EP_pyxb'
[ 2%] Completed 'EP_pyxb'
[ 2%] Built target EP_pyxb
Scanning dependencies of target pythonFiles
[ 2%] Built target pythonFiles
Scanning dependencies of target madlibPatches
[ 2%] Built target madlibPatches
Scanning dependencies of target madpackFiles
[ 2%] Copying __init__.py.
[ 2%] Copying argparse.py.
[ 3%] Copying configyml.py.
[ 3%] Copying madpack.py.
[ 3%] Copying sort-module.py.
[ 3%] Copying upgrade_util.py.
[ 3%] Copying yaml/__init__.py.
[ 3%] Copying yaml/composer.py.
[ 3%] Copying yaml/constructor.py.
[ 3%] Copying yaml/cyaml.py.
[ 4%] Copying yaml/dumper.py.
[ 4%] Copying yaml/emitter.py.
[ 4%] Copying yaml/error.py.
[ 4%] Copying yaml/events.py.
[ 4%] Copying yaml/loader.py.
[ 4%] Copying yaml/nodes.py.
[ 4%] Copying yaml/parser.py.
[ 4%] Copying yaml/reader.py.
[ 5%] Copying yaml/representer.py.
[ 5%] Copying yaml/resolver.py.
[ 5%] Copying yaml/scanner.py.
[ 5%] Copying yaml/serializer.py.
[ 5%] Copying yaml/tokens.py.
[ 5%] Copying changelist.yaml.
[ 5%] Copying changelist_1.0_1.9.1.yaml.
[ 7%] Copying changelist_1.1_1.9.1.yaml.
[ 7%] Copying changelist_1.2_1.9.1.yaml.
[ 7%] Copying changelist_1.3_1.9.1.yaml.
[ 7%] Copying changelist_1.4.1_1.9.1.yaml.
[ 7%] Copying changelist_1.4_1.9.1.yaml.
[ 7%] Copying changelist_1.5_1.9.1.yaml.
[ 7%] Copying changelist_1.6.0S_1.9.1.yaml.
[ 7%] Copying changelist_1.6_1.9.1.yaml.
[ 8%] Copying changelist_1.7.1_1.9.1.yaml.
[ 8%] Copying changelist_1.7_1.9.1.yaml.
[ 8%] Copying changelist_1.8_1.9.1.yaml.
[ 8%] Built target madpackFiles
Scanning dependencies of target binaryFiles
[ 8%] Copying madpack.
[ 8%] Built target binaryFiles
Scanning dependencies of target configFiles
[ 8%] Copying Modules.yml.
[ 8%] Copying Ports.yml.
[ 8%] Copying Version.yml.
[ 8%] Built target configFiles
Scanning dependencies of target sqlFiles_postgresql
[ 8%] Validating and copying assoc_rules/assoc_rules.sql_in.
File "../../../../cmake/TestIfNoUTF8BOM.py", line 30
print 'Detected byte-order mark (%s) in file "%s".' % (BOM, argv[1])
^
SyntaxError: invalid syntax
make[2]: *** [src/ports/postgres/modules/assoc_rules/assoc_rules.sql_in] Error 1
make[1]: *** [src/ports/postgres/CMakeFiles/sqlFiles_postgresql.dir/all] Error 2
make: *** [all] Error 2
Enzo
enzo@insightsfromdata.com
> Error installing 1.9.1 sources on PostgreSQL9.6 and OSX
> -------------------------------------------------------
>
> Key: MADLIB-1027
> URL: https://issues.apache.org/jira/browse/MADLIB-1027
> Project: Apache MADlib
> Issue Type: Bug
> Reporter: Enzo Mar
>
> I’ve tried to install the great MAdlib 1.9.1 form sources on my PostgreSQL9.6 on OSX Sierra. I’m using Anaconda Python 3.5.2.
> make stops with error due to TestIfNoUTF8BOM.py (see below).
> x$ cmake ..
> -- The C compiler identification is AppleClang 8.0.0.8000038
> -- The CXX compiler identification is AppleClang 8.0.0.8000038
> -- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/gcc
> -- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/gcc -- works
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/g++
> -- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/g++ -- works
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Boost version: 1.61.0
> -- Found PythonInterp: /Users/e/anaconda/bin/python (found version "3.5.2")
> -- Found PostgreSQL: /Applications/Postgres.app/Contents/Versions/9.6/bin/postgres
> -- Found PostgreSQL_9_6: /Applications/Postgres.app/Contents/Versions/9.6/bin/postgres
> >> Adding PostgreSQL 9.6 (x86_64) to target list...
> -- Could NOT find Greenplum (missing: GREENPLUM_EXECUTABLE)
> -- Could NOT find HAWQ (missing: HAWQ_EXECUTABLE)
> -- Configuring done
> -- Generating done
> -- Build files have been written to: /Users/e/CloudDrive/dev/gitlib/madlib-master/build
> e-mac:build e$ make
> Scanning dependencies of target sqlFiles
> [ 0%] Built target sqlFiles
> Scanning dependencies of target EP_eigen
> [ 0%] Creating directories for 'EP_eigen'
> [ 0%] Performing download step (download, verify and extract) for 'EP_eigen'
> -- downloading...
> src='https://github.com/madlib/eigen/archive/branches/3.2.tar.gz'
> dst='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/downloads/3.2.tar.gz'
> timeout='none'
> -- Downloading... done
> -- extracting...
> src='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/downloads/3.2.tar.gz'
> dst='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/src/EP_eigen'
> -- extracting... [tar xfz]
> -- extracting... [analysis]
> -- extracting... [rename]
> -- extracting... [clean up]
> -- extracting... done
> [ 0%] No patch step for 'EP_eigen'
> [ 0%] No update step for 'EP_eigen'
> [ 0%] Performing configure step for 'EP_eigen'
> Ignored: cmake -GUnix Makefiles /Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/src/EP_eigen
> [ 1%] Performing build step for 'EP_eigen'
> Ignored: make
> [ 1%] Performing install step for 'EP_eigen'
> Ignored: make
> [ 1%] Completed 'EP_eigen'
> [ 1%] Built target EP_eigen
> Scanning dependencies of target EP_pyxb
> [ 1%] Creating directories for 'EP_pyxb'
> [ 1%] Performing download step (download, verify and extract) for 'EP_pyxb'
> -- downloading...
> src='http://sourceforge.net/projects/pyxb/files/PyXB-1.2.4.tar.gz'
> dst='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/downloads/PyXB-1.2.4.tar.gz'
> timeout='none'
> -- [download 0% complete]
> -- [download 1% complete]
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> -- verifying file...
> file='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/downloads/PyXB-1.2.4.tar.gz'
> -- Downloading... done
> -- extracting...
> src='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/downloads/PyXB-1.2.4.tar.gz'
> dst='/Users/e/CloudDrive/dev/gitlib/madlib-master/build/third_party/src/EP_pyxb'
> -- extracting... [tar xfz]
> -- extracting... [analysis]
> -- extracting... [rename]
> -- extracting... [clean up]
> -- extracting... done
> [ 1%] Performing patch step for 'EP_pyxb'
> patching file setup.py
> PyXB: Removing GPL component from code base
> [ 1%] No update step for 'EP_pyxb'
> [ 1%] No configure step for 'EP_pyxb'
> [ 2%] No build step for 'EP_pyxb'
> [ 2%] Performing install step for 'EP_pyxb'
> [ 2%] Completed 'EP_pyxb'
> [ 2%] Built target EP_pyxb
> Scanning dependencies of target pythonFiles
> [ 2%] Built target pythonFiles
> Scanning dependencies of target madlibPatches
> [ 2%] Built target madlibPatches
> Scanning dependencies of target madpackFiles
> [ 2%] Copying __init__.py.
> [ 2%] Copying argparse.py.
> [ 3%] Copying configyml.py.
> [ 3%] Copying madpack.py.
> [ 3%] Copying sort-module.py.
> [ 3%] Copying upgrade_util.py.
> [ 3%] Copying yaml/__init__.py.
> [ 3%] Copying yaml/composer.py.
> [ 3%] Copying yaml/constructor.py.
> [ 3%] Copying yaml/cyaml.py.
> [ 4%] Copying yaml/dumper.py.
> [ 4%] Copying yaml/emitter.py.
> [ 4%] Copying yaml/error.py.
> [ 4%] Copying yaml/events.py.
> [ 4%] Copying yaml/loader.py.
> [ 4%] Copying yaml/nodes.py.
> [ 4%] Copying yaml/parser.py.
> [ 4%] Copying yaml/reader.py.
> [ 5%] Copying yaml/representer.py.
> [ 5%] Copying yaml/resolver.py.
> [ 5%] Copying yaml/scanner.py.
> [ 5%] Copying yaml/serializer.py.
> [ 5%] Copying yaml/tokens.py.
> [ 5%] Copying changelist.yaml.
> [ 5%] Copying changelist_1.0_1.9.1.yaml.
> [ 7%] Copying changelist_1.1_1.9.1.yaml.
> [ 7%] Copying changelist_1.2_1.9.1.yaml.
> [ 7%] Copying changelist_1.3_1.9.1.yaml.
> [ 7%] Copying changelist_1.4.1_1.9.1.yaml.
> [ 7%] Copying changelist_1.4_1.9.1.yaml.
> [ 7%] Copying changelist_1.5_1.9.1.yaml.
> [ 7%] Copying changelist_1.6.0S_1.9.1.yaml.
> [ 7%] Copying changelist_1.6_1.9.1.yaml.
> [ 8%] Copying changelist_1.7.1_1.9.1.yaml.
> [ 8%] Copying changelist_1.7_1.9.1.yaml.
> [ 8%] Copying changelist_1.8_1.9.1.yaml.
> [ 8%] Built target madpackFiles
> Scanning dependencies of target binaryFiles
> [ 8%] Copying madpack.
> [ 8%] Built target binaryFiles
> Scanning dependencies of target configFiles
> [ 8%] Copying Modules.yml.
> [ 8%] Copying Ports.yml.
> [ 8%] Copying Version.yml.
> [ 8%] Built target configFiles
> Scanning dependencies of target sqlFiles_postgresql
> [ 8%] Validating and copying assoc_rules/assoc_rules.sql_in.
> File "../../../../cmake/TestIfNoUTF8BOM.py", line 30
> print 'Detected byte-order mark (%s) in file "%s".' % (BOM, argv[1])
> ^
> SyntaxError: invalid syntax
> make[2]: *** [src/ports/postgres/modules/assoc_rules/assoc_rules.sql_in] Error 1
> make[1]: *** [src/ports/postgres/CMakeFiles/sqlFiles_postgresql.dir/all] Error 2
> make: *** [all] Error 2
> Enzo
> enzo@insightsfromdata.com
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