[jira] [Commented] (CTAKES-308) ytex unit tests fixes

["Alex Zbarcea (JIRA)" <ji...@apache.org>]

    [ https://issues.apache.org/jira/browse/CTAKES-308?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16276318#comment-16276318 ] 

Alex Zbarcea commented on CTAKES-308:
-------------------------------------

with [https://svn.apache.org/viewvc?view=revision&revision=1817062], this issue should be resolved.

[~vjapache]: please validate latest commit. It should fix it.

I look forward to your feedback,
Alex

> ytex unit tests fixes
> ---------------------
>
>                 Key: CTAKES-308
>                 URL: https://issues.apache.org/jira/browse/CTAKES-308
>             Project: cTAKES
>          Issue Type: Bug
>          Components: ctakes-ytex
>            Reporter: Pei Chen
>            Assignee: Alex Zbarcea
>            Priority: Minor
>
> 2014-08-25 13:33:50,830 WARN  net.sf.ehcache.CacheManager  - Creating a new instance of CacheManager using the diskStorePath "/var/folders/qc/d7xd4zzs0_xcybv88skt5_7m0000gn/T/" which is already used by an existing CacheManager.
> The source of the configuration was
> net.sf.ehcache.config.generator.ConfigurationSource$InputStreamConfigurationSource@7433a719.
> The diskStore path for this CacheManager will be set to /var/folders/qc/d7xd4zzs0_xcybv88skt5_7m0000gn/T//ehcache_auto_created_1408988030830.
> To avoid this warning consider using the CacheManager factory methods to create a singleton CacheManager or specifying a separate ehcache configuration (ehcache.xml) for each CacheManager instance.
> 2014-08-25 13:33:51,082 WARN
> org.hibernate.engine.jdbc.spi.SqlExceptionHelper  - SQL Error: 62,
> SQLState: S0010
> 2014-08-25 13:33:51,082 ERROR
> org.hibernate.engine.jdbc.spi.SqlExceptionHelper  - Unknown JDBC escape sequence: {{db.schema}.MRCONSO mrconso0_ where mrconso0_.aui>?
> and length(mrconso0_.aui)>0 and length(mrconso0_.str)<200 and mrconso0_.lat='ENG' order by mrconso0_.aui
> 2014-08-25 13:33:51,085 WARN
> org.apache.ctakes.ytex.umls.dao.UMLSDaoTest  - sql exception - mrconso probably doesn't exist, check error
> org.hibernate.exception.SQLGrammarException: could not prepare statement
> at org.hibernate.exception.internal.SQLStateConversionDelegate.convert(SQLStateConversionDelegate.java:123)
> at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:49)
> at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:125)
> at org.hibernate.engine.jdbc.internal.StatementPreparerImpl$StatementPreparationTemplate.prepareStatement(StatementPreparerImpl.java:188)
> at org.hibernate.engine.jdbc.internal.StatementPreparerImpl.prepareQueryStatement(StatementPreparerImpl.java:159)
> at org.hibernate.loader.Loader.prepareQueryStatement(Loader.java:1859)
> at org.hibernate.loader.Loader.executeQueryStatement(Loader.java:1836)
> at org.hibernate.loader.Loader.executeQueryStatement(Loader.java:1816)
> at org.hibernate.loader.Loader.doQuery(Loader.java:900)
> at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:342)
> at org.hibernate.loader.Loader.doList(Loader.java:2526)
> at org.hibernate.loader.Loader.doList(Loader.java:2512)
> at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2342)
> at org.hibernate.loader.Loader.list(Loader.java:2337)
> at org.hibernate.loader.hql.QueryLoader.list(QueryLoader.java:495)
> at org.hibernate.hql.internal.ast.QueryTranslatorImpl.list(QueryTranslatorImpl.java:357)
> at org.hibernate.engine.query.spi.HQLQueryPlan.performList(HQLQueryPlan.java:195)
> at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1269)
> at org.hibernate.internal.QueryImpl.list(QueryImpl.java:101)
> at org.apache.ctakes.ytex.umls.dao.UMLSDaoImpl.getAllAuiStr(UMLSDaoImpl.java:106)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:606)
> at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:319)
> at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
> at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110)
> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
> at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:90)
> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
> at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
> at com.sun.proxy.$Proxy11.getAllAuiStr(Unknown Source)
> at org.apache.ctakes.ytex.umls.dao.UMLSDaoTest.testGetAllAuiStr(UMLSDaoTest.java:53)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:606)
> at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
> at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
> at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
> at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
> at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
> at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
> at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
> at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
> at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
> at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
> at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
> at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
> at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
> at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
> at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:249)
> at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:142)
> at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:113)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:606)
> at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:189)
> at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:165)
> at org.apache.maven.surefire.booter.ProviderFactory.invokeProvider(ProviderFactory.java:85)
> at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:104)
> at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:75)
> Caused by: java.sql.SQLException: Unknown JDBC escape sequence:
> {{db.schema}.MRCONSO mrconso0_ where mrconso0_.aui>? and
> length(mrconso0_.aui)>0 and length(mrconso0_.str)<200 and mrconso0_.lat='ENG' order by mrconso0_.aui
> at org.hsqldb.jdbc.jdbcConnection.onStartEscapeSequence(Unknown Source)
> at org.hsqldb.jdbc.jdbcConnection.nativeSQL(Unknown Source)
> at org.hsqldb.jdbc.jdbcPreparedStatement.<init>(Unknown Source)
> at org.hsqldb.jdbc.jdbcConnection.prepareStatement(Unknown Source)
> at org.apache.commons.dbcp.DelegatingConnection.prepareStatement(DelegatingConnection.java:281)
> at org.apache.commons.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.prepareStatement(PoolingDataSource.java:313)
> at org.hibernate.engine.jdbc.internal.StatementPreparerImpl$5.doPrepare(StatementPreparerImpl.java:161)
> at org.hibernate.engine.jdbc.internal.StatementPreparerImpl$StatementPreparationTemplate.prepareStatement(StatementPreparerImpl.java:182)
> ... 60 more
> Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.202 sec
> Results :
> Tests in error:
>   setSchema(org.apache.ctakes.jdl.data.xml.ValidationTest)



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