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Posted to issues@iceberg.apache.org by GitBox <gi...@apache.org> on 2021/09/21 04:05:26 UTC
[GitHub] [iceberg] tuziling commented on issue #2028: The data generated by Actions cannot be serialized
tuziling commented on issue #2028:
URL: https://github.com/apache/iceberg/issues/2028#issuecomment-923603971
After writing the data to iceberg, use RowKind.DELETE to delete, use flink to read iceberg in real time and report an error. The log information is as follows:
```
Exception in thread "main" java.util.concurrent.ExecutionException: org.apache.flink.runtime.client.JobExecutionException: Job execution failed.
at java.base/java.util.concurrent.CompletableFuture.reportGet(CompletableFuture.java:395)
at java.base/java.util.concurrent.CompletableFuture.get(CompletableFuture.java:1999)
at org.apache.flink.streaming.api.environment.StreamExecutionEnvironment.execute(StreamExecutionEnvironment.java:1719)
at org.apache.flink.streaming.api.environment.LocalStreamEnvironment.execute(LocalStreamEnvironment.java:74)
at org.apache.flink.streaming.api.environment.StreamExecutionEnvironment.execute(StreamExecutionEnvironment.java:1699)
at com.kingsoft.data.read.StreamingRead.main(StreamingRead.java:59)
Caused by: org.apache.flink.runtime.client.JobExecutionException: Job execution failed.
at org.apache.flink.runtime.jobmaster.JobResult.toJobExecutionResult(JobResult.java:147)
at org.apache.flink.client.program.PerJobMiniClusterFactory$PerJobMiniClusterJobClient.lambda$getJobExecutionResult$2(PerJobMiniClusterFactory.java:186)
at java.base/java.util.concurrent.CompletableFuture$UniApply.tryFire(CompletableFuture.java:642)
at java.base/java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506)
at java.base/java.util.concurrent.CompletableFuture.complete(CompletableFuture.java:2073)
at org.apache.flink.runtime.rpc.akka.AkkaInvocationHandler.lambda$invokeRpc$0(AkkaInvocationHandler.java:229)
at java.base/java.util.concurrent.CompletableFuture.uniWhenComplete(CompletableFuture.java:859)
at java.base/java.util.concurrent.CompletableFuture$UniWhenComplete.tryFire(CompletableFuture.java:837)
at java.base/java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:506)
at java.base/java.util.concurrent.CompletableFuture.complete(CompletableFuture.java:2073)
at org.apache.flink.runtime.concurrent.FutureUtils$1.onComplete(FutureUtils.java:892)
at akka.dispatch.OnComplete.internal(Future.scala:264)
at akka.dispatch.OnComplete.internal(Future.scala:261)
at akka.dispatch.japi$CallbackBridge.apply(Future.scala:191)
at akka.dispatch.japi$CallbackBridge.apply(Future.scala:188)
at scala.concurrent.impl.CallbackRunnable.run$$$capture(Promise.scala:60)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala)
at org.apache.flink.runtime.concurrent.Executors$DirectExecutionContext.execute(Executors.java:74)
at scala.concurrent.impl.CallbackRunnable.executeWithValue(Promise.scala:68)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.$anonfun$tryComplete$1$adapted(Promise.scala:284)
at scala.concurrent.impl.Promise$DefaultPromise.tryComplete(Promise.scala:284)
at akka.pattern.PromiseActorRef.$bang(AskSupport.scala:573)
at akka.pattern.PipeToSupport$PipeableFuture$$anonfun$pipeTo$1.applyOrElse(PipeToSupport.scala:22)
at akka.pattern.PipeToSupport$PipeableFuture$$anonfun$pipeTo$1.applyOrElse(PipeToSupport.scala:21)
at scala.concurrent.Future.$anonfun$andThen$1(Future.scala:532)
at scala.concurrent.impl.Promise.liftedTree1$1(Promise.scala:29)
at scala.concurrent.impl.Promise.$anonfun$transform$1(Promise.scala:29)
at scala.concurrent.impl.CallbackRunnable.run$$$capture(Promise.scala:60)
at scala.concurrent.impl.CallbackRunnable.run(Promise.scala)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch.$anonfun$run$1(BatchingExecutor.scala:91)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:81)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:91)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
Caused by: org.apache.flink.runtime.JobException: Recovery is suppressed by NoRestartBackoffTimeStrategy
at org.apache.flink.runtime.executiongraph.failover.flip1.ExecutionFailureHandler.handleFailure(ExecutionFailureHandler.java:116)
at org.apache.flink.runtime.executiongraph.failover.flip1.ExecutionFailureHandler.getFailureHandlingResult(ExecutionFailureHandler.java:78)
at org.apache.flink.runtime.scheduler.DefaultScheduler.handleTaskFailure(DefaultScheduler.java:192)
at org.apache.flink.runtime.scheduler.DefaultScheduler.maybeHandleTaskFailure(DefaultScheduler.java:185)
at org.apache.flink.runtime.scheduler.DefaultScheduler.updateTaskExecutionStateInternal(DefaultScheduler.java:179)
at org.apache.flink.runtime.scheduler.SchedulerBase.updateTaskExecutionState(SchedulerBase.java:503)
at org.apache.flink.runtime.jobmaster.JobMaster.updateTaskExecutionState(JobMaster.java:386)
at jdk.internal.reflect.GeneratedMethodAccessor17.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.flink.runtime.rpc.akka.AkkaRpcActor.handleRpcInvocation(AkkaRpcActor.java:284)
at org.apache.flink.runtime.rpc.akka.AkkaRpcActor.handleRpcMessage(AkkaRpcActor.java:199)
at org.apache.flink.runtime.rpc.akka.FencedAkkaRpcActor.handleRpcMessage(FencedAkkaRpcActor.java:74)
at org.apache.flink.runtime.rpc.akka.AkkaRpcActor.handleMessage(AkkaRpcActor.java:152)
at akka.japi.pf.UnitCaseStatement.apply(CaseStatements.scala:26)
at akka.japi.pf.UnitCaseStatement.apply(CaseStatements.scala:21)
at scala.PartialFunction.applyOrElse(PartialFunction.scala:123)
at scala.PartialFunction.applyOrElse$(PartialFunction.scala:122)
at akka.japi.pf.UnitCaseStatement.applyOrElse(CaseStatements.scala:21)
at scala.PartialFunction$OrElse.applyOrElse(PartialFunction.scala:171)
at scala.PartialFunction$OrElse.applyOrElse(PartialFunction.scala:172)
at scala.PartialFunction$OrElse.applyOrElse(PartialFunction.scala:172)
at akka.actor.Actor.aroundReceive(Actor.scala:517)
at akka.actor.Actor.aroundReceive$(Actor.scala:515)
at akka.actor.AbstractActor.aroundReceive(AbstractActor.scala:225)
at akka.actor.ActorCell.receiveMessage(ActorCell.scala:592)
at akka.actor.ActorCell.invoke(ActorCell.scala:561)
at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:258)
at akka.dispatch.Mailbox.run(Mailbox.scala:225)
at akka.dispatch.Mailbox.exec(Mailbox.scala:235)
... 4 more
Caused by: com.esotericsoftware.kryo.KryoException: java.lang.UnsupportedOperationException
Serialization trace:
nullValueCounts (org.apache.iceberg.GenericDataFile)
file (org.apache.iceberg.BaseFileScanTask)
fileScanTask (org.apache.iceberg.BaseFileScanTask$SplitScanTask)
tasks (org.apache.iceberg.BaseCombinedScanTask)
task (org.apache.iceberg.flink.source.FlinkInputSplit)
at com.esotericsoftware.kryo.serializers.ObjectField.read(ObjectField.java:125)
at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:528)
at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:679)
at com.esotericsoftware.kryo.serializers.ObjectField.read(ObjectField.java:106)
at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:528)
at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:679)
at com.esotericsoftware.kryo.serializers.ObjectField.read(ObjectField.java:106)
at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:528)
at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:679)
at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:378)
at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:289)
at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:679)
at com.esotericsoftware.kryo.serializers.ObjectField.read(ObjectField.java:106)
at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:528)
at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:679)
at com.esotericsoftware.kryo.serializers.ObjectField.read(ObjectField.java:106)
at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:528)
at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:761)
at org.apache.flink.api.java.typeutils.runtime.kryo.KryoSerializer.deserialize(KryoSerializer.java:346)
at org.apache.flink.streaming.runtime.streamrecord.StreamElementSerializer.deserialize(StreamElementSerializer.java:205)
at org.apache.flink.streaming.runtime.streamrecord.StreamElementSerializer.deserialize(StreamElementSerializer.java:46)
at org.apache.flink.runtime.plugable.NonReusingDeserializationDelegate.read(NonReusingDeserializationDelegate.java:55)
at org.apache.flink.runtime.io.network.api.serialization.NonSpanningWrapper.readInto(NonSpanningWrapper.java:335)
at org.apache.flink.runtime.io.network.api.serialization.SpillingAdaptiveSpanningRecordDeserializer.readNonSpanningRecord(SpillingAdaptiveSpanningRecordDeserializer.java:108)
at org.apache.flink.runtime.io.network.api.serialization.SpillingAdaptiveSpanningRecordDeserializer.getNextRecord(SpillingAdaptiveSpanningRecordDeserializer.java:85)
at org.apache.flink.streaming.runtime.io.StreamTaskNetworkInput.emitNext(StreamTaskNetworkInput.java:146)
at org.apache.flink.streaming.runtime.io.StreamOneInputProcessor.processInput(StreamOneInputProcessor.java:67)
at org.apache.flink.streaming.runtime.tasks.StreamTask.processInput(StreamTask.java:345)
at org.apache.flink.streaming.runtime.tasks.mailbox.MailboxProcessor.runMailboxStep(MailboxProcessor.java:191)
at org.apache.flink.streaming.runtime.tasks.mailbox.MailboxProcessor.runMailboxLoop(MailboxProcessor.java:181)
at org.apache.flink.streaming.runtime.tasks.StreamTask.runMailboxLoop(StreamTask.java:558)
at org.apache.flink.streaming.runtime.tasks.StreamTask.invoke(StreamTask.java:530)
at org.apache.flink.runtime.taskmanager.Task.doRun(Task.java:721)
at org.apache.flink.runtime.taskmanager.Task.run(Task.java:546)
at java.base/java.lang.Thread.run(Thread.java:829)
Caused by: java.lang.UnsupportedOperationException
at java.base/java.util.Collections$UnmodifiableMap.put(Collections.java:1457)
at com.esotericsoftware.kryo.serializers.MapSerializer.read(MapSerializer.java:144)
at com.esotericsoftware.kryo.serializers.MapSerializer.read(MapSerializer.java:21)
at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:679)
at com.esotericsoftware.kryo.serializers.ObjectField.read(ObjectField.java:106)
... 34 more
```
The reading code is as follows:
```
import org.apache.flink.streaming.api.datastream.DataStream;
import org.apache.flink.streaming.api.environment.StreamExecutionEnvironment;
import org.apache.flink.table.data.RowData;
import org.apache.hadoop.conf.Configuration;
import org.apache.iceberg.catalog.TableIdentifier;
import org.apache.iceberg.flink.CatalogLoader;
import org.apache.iceberg.flink.TableLoader;
import org.apache.iceberg.flink.source.FlinkSource;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.util.HashMap;
import java.util.Map;
public class StreamingRead {
private static Logger log = LoggerFactory.getLogger(StreamingRead.class);
public static void main(String[] args) throws Exception{
StreamExecutionEnvironment env = StreamExecutionEnvironment.getExecutionEnvironment();
String catalogName = "songfuhao_catalog";
Map<String,String> map = new HashMap<>();
map.put("warehouse","s3://songfuhao-bucket/songfuhao");
map.put("catalog-impl","org.apache.iceberg.aws.glue.GlueCatalog");
map.put("io-impl","org.apache.iceberg.aws.s3.S3FileIO");
map.put("lock-impl","org.apache.iceberg.aws.glue.DynamoLockManager");
map.put("lock.table","myGlueLockTable");
Configuration hadoopConf = new Configuration();
String impl = "org.apache.iceberg.aws.glue.GlueCatalog";
CatalogLoader tzlCatalog = CatalogLoader.custom(catalogName, map, hadoopConf, impl);
TableIdentifier identifier = TableIdentifier.of("songfh", "sfuhao_test");
/*Catalog catalog = tzlCatalog.loadCatalog();
Table table = catalog.loadTable(identifier);
TableOperations operations = ((BaseTable) table).operations();
TableMetadata metadata = operations.current();
operations.commit(metadata, metadata.upgradeToFormatVersion(2));*/
TableLoader tableLoader = TableLoader.fromCatalog(tzlCatalog, identifier);
DataStream<RowData> stream = FlinkSource.forRowData()
.env(env)
.tableLoader(tableLoader)
.streaming(true)
.build();
stream.print();
env.execute(StreamingRead.class.getSimpleName());
}
}
```
Do you know how to modify the data in iceberg to be read normally?
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