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Posted to issues@spark.apache.org by "Li Yuanjian (JIRA)" <ji...@apache.org> on 2018/08/01 16:12:01 UTC
[jira] [Created] (SPARK-24989) BlockFetcher should retry while
getting OutOfDirectMemoryError
Li Yuanjian created SPARK-24989:
-----------------------------------
Summary: BlockFetcher should retry while getting OutOfDirectMemoryError
Key: SPARK-24989
URL: https://issues.apache.org/jira/browse/SPARK-24989
Project: Spark
Issue Type: Improvement
Components: Shuffle
Affects Versions: 2.2.0
Reporter: Li Yuanjian
h3. Description
This problem can be reproduced stably by a large parallelism job migrate from map reduce to Spark in our practice, some metrics list below:
||Item||Value||
|spark.executor.instances|1000|
|spark.executor.cores|5|
|task number of shuffle writer stage|18038|
|task number of shuffle reader stage|80000|
While the shuffle writer stage successful ended, the shuffle reader stage starting and keep failing by FetchFail. Each fetch request need the netty sever allocate a buffer in 16MB(detailed stack attached below), the huge amount of fetch request will use up default maxDirectMemory rapidly, even though we bump up io.netty.maxDirectMemory to 50GB!
{code:java}
org.apache.spark.shuffle.FetchFailedException: failed to allocate 16777216 byte(s) of direct memory (used: 21474836480, max: 21474836480)
at org.apache.spark.storage.ShuffleBlockFetcherIterator.throwFetchFailedException(ShuffleBlockFetcherIterator.scala:514)
at org.apache.spark.storage.ShuffleBlockFetcherIterator.next(ShuffleBlockFetcherIterator.scala:445)
at org.apache.spark.storage.ShuffleBlockFetcherIterator.next(ShuffleBlockFetcherIterator.scala:61)
at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:434)
at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:440)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
at org.apache.spark.util.CompletionIterator.hasNext(CompletionIterator.scala:32)
at org.apache.spark.InterruptibleIterator.hasNext(InterruptibleIterator.scala:37)
at org.apache.spark.util.collection.ExternalSorter.insertAll(ExternalSorter.scala:199)
at org.apache.spark.shuffle.BlockStoreShuffleReader.read(BlockStoreShuffleReader.scala:119)
at org.apache.spark.rdd.ShuffledRDD.compute(ShuffledRDD.scala:105)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
at org.apache.spark.scheduler.Task.run(Task.scala:108)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:338)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: io.netty.util.internal.OutOfDirectMemoryError: failed to allocate 16777216 byte(s) of direct memory (used: 21474836480, max: 21474836480)
at io.netty.util.internal.PlatformDependent.incrementMemoryCounter(PlatformDependent.java:530)
at io.netty.util.internal.PlatformDependent.allocateDirectNoCleaner(PlatformDependent.java:484)
at io.netty.buffer.PoolArena$DirectArena.allocateDirect(PoolArena.java:711)
at io.netty.buffer.PoolArena$DirectArena.newChunk(PoolArena.java:700)
at io.netty.buffer.PoolArena.allocateNormal(PoolArena.java:237)
at io.netty.buffer.PoolArena.allocate(PoolArena.java:221)
at io.netty.buffer.PoolArena.allocate(PoolArena.java:141)
at io.netty.buffer.PooledByteBufAllocator.newDirectBuffer(PooledByteBufAllocator.java:296)
at io.netty.buffer.AbstractByteBufAllocator.directBuffer(AbstractByteBufAllocator.java:177)
at io.netty.buffer.AbstractByteBufAllocator.directBuffer(AbstractByteBufAllocator.java:168)
at io.netty.buffer.AbstractByteBufAllocator.ioBuffer(AbstractByteBufAllocator.java:129)
at io.netty.channel.AdaptiveRecvByteBufAllocator$HandleImpl.allocate(AdaptiveRecvByteBufAllocator.java:104)
at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:117)
at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:643)
at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:566)
at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:480)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:442)
at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:131)
at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:144)
... 1 more
{code}
h3. Solution
Add retry support and bump up java option io.netty.maxDirectMemory and try lager spark.shuffle.io.retryWait can help the job passing and , I think we need more discussion about load balance of fetch requests, but maybe the retry support is necessary first.
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