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Posted to commits@taverna.apache.org by st...@apache.org on 2015/02/17 21:40:12 UTC
[21/51] [partial] incubator-taverna-language git commit: temporarily
empty repository
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/316e4a8a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/diagram/workflow/HelloWorld.svg
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diff --git a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/diagram/workflow/HelloWorld.svg b/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/diagram/workflow/HelloWorld.svg
deleted file mode 100644
index 0c14a45..0000000
--- a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/diagram/workflow/HelloWorld.svg
+++ /dev/null
@@ -1,91 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements. See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership. The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License. You may obtain a copy of the License at
-
- http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied. See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-
-<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.0//EN"
- "http://www.w3.org/TR/2001/REC-SVG-20010904/DTD/svg10.dtd" [
- <!ATTLIST svg xmlns:xlink CDATA #FIXED "http://www.w3.org/1999/xlink">
-]>
-<!-- Generated by Graphviz version 2.20.2 (Tue Mar  2 19:03:41 UTC 2010)
- For user: (stain) Stian Soiland-Reyes,,,, -->
-<!-- Title: A_simple_hello_world_workflow Pages: 1 -->
-<svg width="146pt" height="210pt"
- viewBox="0.00 0.00 146.00 210.00" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
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-<title>A_simple_hello_world_workflow</title>
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-<text text-anchor="middle" x="70" y="-60.5" style="font-family:Times New Roman;font-size:10.00;">Workflow output ports</text>
-</g>
-<g id="cluster3" class="cluster"><title>cluster_A_simple_hello_world_workflowsources</title>
-<polygon style="fill:none;stroke:black;stroke-dasharray:1,5;" points="10,-137 10,-194 121,-194 121,-137 10,-137"/>
-<text text-anchor="middle" x="65" y="-181.5" style="font-family:Times New Roman;font-size:10.00;">Workflow input ports</text>
-</g>
-<!-- A_simple_hello_world_workflowWORKFLOWINTERNALSINKCONTROL -->
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-<!-- A_simple_hello_world_workflowWORKFLOWINTERNALSINK_results -->
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-<text text-anchor="middle" x="45" y="-31" style="font-family:Arial;font-size:10.00;">results</text>
-</g>
-<!-- A_simple_hello_world_workflowWORKFLOWINTERNALSOURCECONTROL -->
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-</g>
-<!-- A_simple_hello_world_workflowWORKFLOWINTERNALSOURCE_yourName -->
-<g id="node6" class="node"><title>A_simple_hello_world_workflowWORKFLOWINTERNALSOURCE_yourName</title>
-<polygon style="fill:#8ed6f0;stroke:black;" points="86,-165 26,-165 26,-145 86,-145 86,-165"/>
-<text text-anchor="middle" x="56" y="-152" style="font-family:Arial;font-size:10.00;">yourName</text>
-</g>
-<!-- A_simple_hello_world_workflowBeanshell -->
-<g id="node7" class="node"><title>A_simple_hello_world_workflowBeanshell</title>
-<polygon style="fill:#deb887;stroke:black;" points="58,-129 2.13163e-14,-129 0,-109 58,-109 58,-129"/>
-<text text-anchor="middle" x="29" y="-116" style="font-family:Arial;font-size:10.00;">Beanshell</text>
-</g>
-<!-- A_simple_hello_world_workflowWORKFLOWINTERNALSOURCE_yourName->A_simple_hello_world_workflowBeanshell -->
-<g id="edge4" class="edge"><title>A_simple_hello_world_workflowWORKFLOWINTERNALSOURCE_yourName->A_simple_hello_world_workflowBeanshell</title>
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-<polygon style="fill:#000000;stroke:#000000;" points="44.916,-136.042 37,-129 38.7969,-139.441 44.916,-136.042"/>
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-<!-- A_simple_hello_world_workflowMerge0 -->
-<g id="node8" class="node"><title>A_simple_hello_world_workflowMerge0</title>
-<ellipse style="fill:#4f94cd;stroke:black;" cx="45" cy="-87" rx="6" ry="6"/>
-</g>
-<!-- A_simple_hello_world_workflowWORKFLOWINTERNALSOURCE_yourName->A_simple_hello_world_workflowMerge0 -->
-<g id="edge6" class="edge"><title>A_simple_hello_world_workflowWORKFLOWINTERNALSOURCE_yourName->A_simple_hello_world_workflowMerge0</title>
-<path style="fill:none;stroke:#000000;" d="M58,-145C60,-135 61,-121 58,-109 57,-106 56,-103 54,-100"/>
-<polygon style="fill:#000000;stroke:#000000;" points="57.268,-98.625 49,-92 51.332,-102.335 57.268,-98.625"/>
-</g>
-<!-- A_simple_hello_world_workflowBeanshell->A_simple_hello_world_workflowMerge0 -->
-<g id="edge8" class="edge"><title>A_simple_hello_world_workflowBeanshell->A_simple_hello_world_workflowMerge0</title>
-<path style="fill:none;stroke:#000000;" d="M34,-109C35,-107 36,-105 38,-102"/>
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-</g>
-</g>
-</svg>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/316e4a8a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/mimetype
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diff --git a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/mimetype b/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/mimetype
deleted file mode 100644
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--- a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/mimetype
+++ /dev/null
@@ -1 +0,0 @@
-application/vnd.taverna.scufl2.workflow-bundle
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/316e4a8a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/ontologies/taverna2.2.rdf
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diff --git a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/ontologies/taverna2.2.rdf b/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/ontologies/taverna2.2.rdf
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--- a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/ontologies/taverna2.2.rdf
+++ /dev/null
@@ -1,55 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements. See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership. The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License. You may obtain a copy of the License at
-
- http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied. See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-
-<rdf:RDF xmlns="http://ns.taverna.org.uk/2010/scufl2#"
- xmlns:beanshell="beanshell#"
- xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:owl="http://www.w3.org/2002/07/owl#"
- xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
- xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
- xsi:schemaLocation="http://ns.taverna.org.uk/2010/scufl2# http://ns.taverna.org.uk/2010/scufl2/scufl2.xsd
- http://www.w3.org/1999/02/22-rdf-syntax-ns# http://ns.taverna.org.uk/2010/scufl2/rdf.xsd"
- xsi:type="OntologyDocument" xml:base="http://ns.taverna.org.uk/2010/activity/" >
-
- <owl:Class
- rdf:about="beanshell">
- <configurationType
- rdf:resource="beanshell#Configuration" />
- <rdfs:subClassOf rdf:resource="http://ns.taverna.org.uk/2010/scufl2#Activity" />
- </owl:Class>
-
- <owl:Class
- rdf:about="beanshell#Config">
- <rdfs:subClassOf rdf:resource="http://ns.taverna.org.uk/2010/scufl2#Configuration" />
- </owl:Class>
-
- <owl:DatatypeProperty
- rdf:about="beanshell#script">
- <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty" />
- <required rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</required>
- <rdfs:domain
- rdf:resource="beanshell#Configuration" />
- <rdfs:label>script</rdfs:label>
- <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string" />
- <rdfs:subPropertyOf rdf:resource="http://ns.taverna.org.uk/2010/scufl2#script" />
- </owl:DatatypeProperty>
-</rdf:RDF>
-
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/316e4a8a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/profile/tavernaServer.rdf
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diff --git a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/profile/tavernaServer.rdf b/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/profile/tavernaServer.rdf
deleted file mode 100644
index a156847..0000000
--- a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/profile/tavernaServer.rdf
+++ /dev/null
@@ -1,87 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements. See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership. The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License. You may obtain a copy of the License at
-
- http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied. See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-
-<rdf:RDF xmlns="http://ns.taverna.org.uk/2010/scufl2#"
- xmlns:beanshell="http://ns.taverna.org.uk/2010/activity/beanshell#"
- xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:owl="http://www.w3.org/2002/07/owl#"
- xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
- xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
- xsi:schemaLocation="http://ns.taverna.org.uk/2010/scufl2# http://ns.taverna.org.uk/2010/scufl2/scufl2.xsd
- http://www.w3.org/1999/02/22-rdf-syntax-ns# http://ns.taverna.org.uk/2010/scufl2/rdf.xsd"
- xsi:type="ProfileDocument" xml:base="tavernaServer/">
-
- <Profile rdf:about="">
- <name>tavernaServer</name>
- <processorBinding rdf:resource="processorbinding/Hello/" />
- <activateConfiguration rdf:resource="configuration/Hello/" />
- </Profile>
-
- <Activity rdf:about="activity/HelloScript/">
- <rdf:type
- rdf:resource="http://ns.taverna.org.uk/2010/activity/beanshell" />
- <name>HelloScript</name>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/HelloScript/in/personName">
- <name>personName</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- </InputActivityPort>
- </inputActivityPort>
-
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/HelloScript/out/hello">
- <name>hello</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- <granularPortDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</granularPortDepth>
- </OutputActivityPort>
- </outputActivityPort>
- </Activity>
-
- <ProcessorBinding rdf:about="processorbinding/Hello/">
- <name>Hello</name>
- <bindActivity rdf:resource="activity/HelloScript/" />
- <bindProcessor rdf:resource="../../workflow/HelloWorld/processor/Hello/" />
- <inputPortBinding>
- <InputPortBinding rdf:about="processorbinding/Hello/in/name">
- <bindInputActivityPort rdf:resource="activity/HelloScript/in/personName" />
- <bindInputProcessorPort
- rdf:resource="../../workflow/HelloWorld/processor/Hello/in/name" />
- </InputPortBinding>
- </inputPortBinding>
- <outputPortBinding>
- <OutputPortBinding rdf:about="processorbinding/Hello/out/greeting">
- <bindOutputActivityPort rdf:resource="activity/HelloScript/out/hello" />
- <bindOutputProcessorPort
- rdf:resource="../../workflow/HelloWorld/processor/Hello/out/greeting" />
- </OutputPortBinding>
- </outputPortBinding>
- </ProcessorBinding>
-
- <Configuration rdf:about="configuration/Hello/">
- <rdf:type
- rdf:resource="http://ns.taverna.org.uk/2010/activity/beanshell#Config" />
- <name>Hello</name>
- <configure rdf:resource="activity/HelloScript/" />
- <beanshell:script>hello = "Hello, " + personName;
-System.out.println("Server says: " + hello);</beanshell:script>
- </Configuration>
-
-</rdf:RDF>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/316e4a8a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/profile/tavernaWorkbench.rdf
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diff --git a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/profile/tavernaWorkbench.rdf b/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/profile/tavernaWorkbench.rdf
deleted file mode 100644
index 3f2b98b..0000000
--- a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/profile/tavernaWorkbench.rdf
+++ /dev/null
@@ -1,85 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements. See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership. The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License. You may obtain a copy of the License at
-
- http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied. See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-
-<rdf:RDF xmlns="http://ns.taverna.org.uk/2010/scufl2#"
- xmlns:beanshell="http://ns.taverna.org.uk/2010/activity/beanshell#"
- xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:owl="http://www.w3.org/2002/07/owl#"
- xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
- xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
- xsi:schemaLocation="http://ns.taverna.org.uk/2010/scufl2# http://ns.taverna.org.uk/2010/scufl2/scufl2.xsd
- http://www.w3.org/1999/02/22-rdf-syntax-ns# http://ns.taverna.org.uk/2010/scufl2/rdf.xsd"
- xsi:type="ProfileDocument" xml:base="tavernaWorkbench/">
- <Profile rdf:about="">
- <name>tavernaWorkbench</name>
- <processorBinding rdf:resource="processorbinding/Hello/" />
- <activateConfiguration rdf:resource="configuration/Hello/" />
- </Profile>
-
- <Activity rdf:about="activity/HelloScript/">
- <rdf:type
- rdf:resource="http://ns.taverna.org.uk/2010/activity/beanshell" />
- <name>HelloScript</name>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/HelloScript/in/personName">
- <name>personName</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- </InputActivityPort>
- </inputActivityPort>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/HelloScript/out/hello">
- <name>hello</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- <granularPortDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</granularPortDepth>
- </OutputActivityPort>
- </outputActivityPort>
- </Activity>
-
- <ProcessorBinding rdf:about="processorbinding/Hello/">
- <name>Hello</name>
- <bindActivity rdf:resource="activity/HelloScript/" />
- <bindProcessor rdf:resource="../../workflow/HelloWorld/processor/Hello/" />
- <activityPosition rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">10</activityPosition>
- <inputPortBinding>
- <InputPortBinding rdf:about="processorbinding/Hello/in/name">
- <bindInputActivityPort rdf:resource="activity/HelloScript/in/personName" />
- <bindInputProcessorPort
- rdf:resource="../../workflow/HelloWorld/processor/Hello/in/name" />
- </InputPortBinding>
- </inputPortBinding>
- <outputPortBinding>
- <OutputPortBinding rdf:about="processorbinding/Hello/out/greeting">
- <bindOutputActivityPort rdf:resource="activity/HelloScript/out/hello" />
- <bindOutputProcessorPort
- rdf:resource="../../workflow/HelloWorld/processor/Hello/out/greeting" />
- </OutputPortBinding>
- </outputPortBinding>
- </ProcessorBinding>
-
- <Configuration rdf:about="configuration/Hello/">
- <rdf:type
- rdf:resource="http://ns.taverna.org.uk/2010/activity/beanshell#Config" />
- <name>Hello</name>
- <configure rdf:resource="activity/HelloScript/" />
- <beanshell:script>hello = "Hello, " + personName;
-JOptionPane.showMessageDialog(null, hello);</beanshell:script>
- </Configuration>
-</rdf:RDF>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/316e4a8a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/workflow/HelloWorld.rdf
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diff --git a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/workflow/HelloWorld.rdf b/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/workflow/HelloWorld.rdf
deleted file mode 100644
index 7c58856..0000000
--- a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/workflow/HelloWorld.rdf
+++ /dev/null
@@ -1,161 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements. See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership. The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License. You may obtain a copy of the License at
-
- http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied. See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-
-<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns="http://ns.taverna.org.uk/2010/scufl2#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="WorkflowDocument" xml:base="HelloWorld/" xsi:schemaLocation="http://ns.taverna.org.uk/2010/scufl2# http://ns.taverna.org.uk/2010/scufl2/scufl2.xsd http://www.w3.org/1999/02/22-rdf-syntax-ns# http://ns.taverna.org.uk/2010/scufl2/rdf.xsd">
- <Workflow rdf:about="">
- <name>HelloWorld</name>
- <workflowIdentifier rdf:resource="http://ns.taverna.org.uk/2010/workflow/00626652-55ae-4a9e-80d4-c8e9ac84e2ca/"/>
- <inputWorkflowPort>
- <InputWorkflowPort rdf:about="in/yourName">
- <name>yourName</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- </InputWorkflowPort>
- </inputWorkflowPort>
- <outputWorkflowPort>
- <OutputWorkflowPort rdf:about="out/results">
- <name>results</name>
- </OutputWorkflowPort>
- </outputWorkflowPort>
- <processor>
- <Processor rdf:about="processor/Hello/">
- <name>Hello</name>
- <inputProcessorPort>
- <InputProcessorPort rdf:about="processor/Hello/in/name">
- <name>name</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- </InputProcessorPort>
- </inputProcessorPort>
- <outputProcessorPort>
- <OutputProcessorPort rdf:about="processor/Hello/out/greeting">
- <name>greeting</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- <granularPortDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</granularPortDepth>
- </OutputProcessorPort>
- </outputProcessorPort>
- <dispatchStack>
- <DispatchStack rdf:about="processor/Hello/dispatchstack/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/taverna/2.2/DefaultDispatchStack"/>
- <dispatchStackLayers rdf:parseType="Collection">
- <DispatchStackLayer rdf:about="processor/Hello/dispatchstack/0/">
-<rdf:type rdf:resource="http://ns.taverna.org.uk/2010/taverna/2.2/Parallelise"/>
- </DispatchStackLayer>
- <DispatchStackLayer rdf:about="processor/Hello/dispatchstack/1/">
-<rdf:type rdf:resource="http://ns.taverna.org.uk/2010/taverna/2.2/ErrorBounce"/>
- </DispatchStackLayer>
- <DispatchStackLayer rdf:about="processor/Hello/dispatchstack/2/">
-<rdf:type rdf:resource="http://ns.taverna.org.uk/2010/taverna/2.2/Failover"/>
- </DispatchStackLayer>
- <DispatchStackLayer rdf:about="processor/Hello/dispatchstack/3/">
-<rdf:type rdf:resource="http://ns.taverna.org.uk/2010/taverna/2.2/Retry"/>
- </DispatchStackLayer>
- <DispatchStackLayer rdf:about="processor/Hello/dispatchstack/4/">
-<rdf:type rdf:resource="http://ns.taverna.org.uk/2010/taverna/2.2/Stop"/>
- </DispatchStackLayer>
- <DispatchStackLayer rdf:about="processor/Hello/dispatchstack/5/">
-<rdf:type rdf:resource="http://ns.taverna.org.uk/2010/taverna/2.2/Invoke"/>
- </DispatchStackLayer>
- </dispatchStackLayers>
- </DispatchStack>
- </dispatchStack>
- <iterationStrategyStack>
- <IterationStrategyStack rdf:about="processor/Hello/iterationstrategy/">
- <iterationStrategies rdf:parseType="Collection">
- <CrossProduct rdf:about="processor/Hello/iterationstrategy/0/">
-<productOf rdf:parseType="Collection">
- <PortNode rdf:about="processor/Hello/iterationstrategy/0/0/">
- <iterateOverInputPort rdf:resource="processor/Hello/in/name"/>
- <desiredDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</desiredDepth>
- </PortNode>
-</productOf>
- </CrossProduct>
- </iterationStrategies>
- </IterationStrategyStack>
- </iterationStrategyStack>
- </Processor>
- </processor>
- <processor>
- <Processor rdf:about="processor/wait4me/">
- <name>wait4me</name>
- <dispatchStack>
- <DispatchStack rdf:about="processor/wait4me/dispatchstack/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/taverna/2.2/DefaultDispatchStack"/>
- <dispatchStackLayers rdf:parseType="Collection">
- <DispatchStackLayer rdf:about="processor/wait4me/dispatchstack/0/">
-<rdf:type rdf:resource="http://ns.taverna.org.uk/2010/taverna/2.2/Parallelise"/>
- </DispatchStackLayer>
- <DispatchStackLayer rdf:about="processor/wait4me/dispatchstack/1/">
-<rdf:type rdf:resource="http://ns.taverna.org.uk/2010/taverna/2.2/ErrorBounce"/>
- </DispatchStackLayer>
- <DispatchStackLayer rdf:about="processor/wait4me/dispatchstack/2/">
-<rdf:type rdf:resource="http://ns.taverna.org.uk/2010/taverna/2.2/Failover"/>
- </DispatchStackLayer>
- <DispatchStackLayer rdf:about="processor/wait4me/dispatchstack/3/">
-<rdf:type rdf:resource="http://ns.taverna.org.uk/2010/taverna/2.2/Retry"/>
- </DispatchStackLayer>
- <DispatchStackLayer rdf:about="processor/wait4me/dispatchstack/4/">
-<rdf:type rdf:resource="http://ns.taverna.org.uk/2010/taverna/2.2/Stop"/>
- </DispatchStackLayer>
- <DispatchStackLayer rdf:about="processor/wait4me/dispatchstack/5/">
-<rdf:type rdf:resource="http://ns.taverna.org.uk/2010/taverna/2.2/Invoke"/>
- </DispatchStackLayer>
- </dispatchStackLayers>
- </DispatchStack>
- </dispatchStack>
- <iterationStrategyStack>
- <IterationStrategyStack rdf:about="processor/wait4me/iterationstrategy/">
- <iterationStrategies rdf:parseType="Collection">
- <CrossProduct rdf:about="processor/wait4me/iterationstrategy/0/">
-<productOf rdf:parseType="Collection"/>
- </CrossProduct>
- </iterationStrategies>
- </IterationStrategyStack>
- </iterationStrategyStack>
- </Processor>
- </processor>
- <datalink>
- <DataLink rdf:about="datalink?from=processor/Hello/out/greeting&to=out/results&mergePosition=0">
- <receiveFrom rdf:resource="processor/Hello/out/greeting"/>
- <sendTo rdf:resource="out/results"/>
- <mergePosition rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</mergePosition>
- </DataLink>
- </datalink>
- <datalink>
- <DataLink rdf:about="datalink?from=in/yourName&to=processor/Hello/in/name">
- <receiveFrom rdf:resource="in/yourName"/>
- <sendTo rdf:resource="processor/Hello/in/name"/>
- </DataLink>
- </datalink>
- <datalink>
- <DataLink rdf:about="datalink?from=in/yourName&to=out/results&mergePosition=1">
- <receiveFrom rdf:resource="in/yourName"/>
- <sendTo rdf:resource="out/results"/>
- <mergePosition rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</mergePosition>
- </DataLink>
- </datalink>
- <control>
- <Blocking rdf:about="control?block=processor/Hello/&untilFinished=processor/wait4me/">
- <block rdf:resource="processor/Hello/"/>
- <untilFinished rdf:resource="processor/wait4me/"/>
- </Blocking>
- </control>
- </Workflow>
-</rdf:RDF>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/316e4a8a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/workflowBundle.rdf
----------------------------------------------------------------------
diff --git a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/workflowBundle.rdf b/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/workflowBundle.rdf
deleted file mode 100644
index e39204f..0000000
--- a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/example/workflowBundle.rdf
+++ /dev/null
@@ -1,59 +0,0 @@
-<?xml version="1.0"?>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements. See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership. The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License. You may obtain a copy of the License at
-
- http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied. See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-
-<rdf:RDF xmlns="http://ns.taverna.org.uk/2010/scufl2#"
- xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
- xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
- xsi:schemaLocation="http://ns.taverna.org.uk/2010/scufl2# http://ns.taverna.org.uk/2010/scufl2/scufl2.xsd http://www.w3.org/1999/02/22-rdf-syntax-ns# http://ns.taverna.org.uk/2010/scufl2/rdf.xsd"
- xsi:type="WorkflowBundleDocument" xml:base="./">
- <WorkflowBundle rdf:about="">
- <name>HelloWorld</name>
- <globalBaseURI
- rdf:resource="http://ns.taverna.org.uk/2010/workflowBundle/28f7c554-4f35-401f-b34b-516e9a0ef731/" />
- <mainWorkflow rdf:resource="workflow/HelloWorld/" />
- <workflow>
- <Workflow rdf:about="workflow/HelloWorld/">
- <rdfs:seeAlso rdf:resource="workflow/HelloWorld.rdf" />
- </Workflow>
- </workflow>
- <!--
- <workflow>
- <Workflow rdf:about="workflow/SomeNestedWorkflow/">
- <rdfs:seeAlso rdf:resource="workflow/SomeNestedWorkflow.rdf" />
- </Workflow>
- </workflow>
- -->
- <mainProfile rdf:resource="profile/tavernaWorkbench/" />
- <profile>
- <Profile rdf:about="profile/tavernaServer/">
- <rdfs:seeAlso rdf:resource="profile/tavernaServer.rdf" />
- </Profile>
- </profile>
- <profile>
- <Profile rdf:about="profile/tavernaWorkbench/">
- <rdfs:seeAlso rdf:resource="profile/tavernaWorkbench.rdf" />
- </Profile>
- </profile>
- <rdfs:seeAlso rdf:resource="annotation/workflowBundle.rdf" />
- </WorkflowBundle>
-
-</rdf:RDF>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/316e4a8a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/megaProfile.rdf
----------------------------------------------------------------------
diff --git a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/megaProfile.rdf b/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/megaProfile.rdf
deleted file mode 100644
index 3e23437..0000000
--- a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/megaProfile.rdf
+++ /dev/null
@@ -1,696 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements. See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership. The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License. You may obtain a copy of the License at
-
- http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied. See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-
-<rdf:RDF xmlns="http://ns.taverna.org.uk/2010/scufl2#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="ProfileDocument" xml:base="taverna-2.2.0/" xsi:schemaLocation="http://ns.taverna.org.uk/2010/scufl2# http://ns.taverna.org.uk/2010/scufl2/scufl2.xsd http://www.w3.org/1999/02/22-rdf-syntax-ns# http://ns.taverna.org.uk/2010/scufl2/rdf.xsd">
- <Profile rdf:about="">
- <name>taverna-2.2.0</name>
- <activateConfiguration rdf:resource="configuration/Content_list/"/>
- <activateConfiguration rdf:resource="configuration/Format_as_GFF/"/>
- <activateConfiguration rdf:resource="configuration/Get_XML_result/"/>
- <activateConfiguration rdf:resource="configuration/Get_XML_result_type_defaultValue/"/>
- <activateConfiguration rdf:resource="configuration/Get_text_result/"/>
- <activateConfiguration rdf:resource="configuration/Get_text_result_type_defaultValue/"/>
- <activateConfiguration rdf:resource="configuration/Input_data/"/>
- <activateConfiguration rdf:resource="configuration/Input_data_type_defaultValue/"/>
- <activateConfiguration rdf:resource="configuration/Job_params/"/>
- <activateConfiguration rdf:resource="configuration/Job_params_async_defaultValue/"/>
- <activateConfiguration rdf:resource="configuration/Job_params_crc_defaultValue/"/>
- <activateConfiguration rdf:resource="configuration/Job_params_goterms_defaultValue/"/>
- <activateConfiguration rdf:resource="configuration/Job_params_seqtype_defaultValue/"/>
- <activateConfiguration rdf:resource="configuration/Unpack_XML_result/"/>
- <activateConfiguration rdf:resource="configuration/Unpack_text_result/"/>
- <activateConfiguration rdf:resource="configuration/checkStatus/"/>
- <activateConfiguration rdf:resource="configuration/runInterProScan/"/>
- </Profile>
- <Activity rdf:about="activity/Content_list/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/xml-splitter/in"/>
- <name>Content_list</name>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/Content_list/in/WSArrayofData">
- <name>WSArrayofData</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</portDepth>
- </InputActivityPort>
- </inputActivityPort>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/Content_list/out/output">
- <name>output</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- <granularPortDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</granularPortDepth>
- </OutputActivityPort>
- </outputActivityPort>
- </Activity>
- <Activity rdf:about="activity/Format_as_GFF/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/beanshell"/>
- <name>Format_as_GFF</name>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/Format_as_GFF/in/interproscan_text">
- <name>interproscan_text</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- </InputActivityPort>
- </inputActivityPort>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/Format_as_GFF/out/interproscan_gff">
- <name>interproscan_gff</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- <granularPortDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</granularPortDepth>
- </OutputActivityPort>
- </outputActivityPort>
- </Activity>
- <Activity rdf:about="activity/Get_XML_result/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/wsdl"/>
- <name>Get_XML_result</name>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/Get_XML_result/in/jobid">
- <name>jobid</name>
- </InputActivityPort>
- </inputActivityPort>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/Get_XML_result/in/type">
- <name>type</name>
- </InputActivityPort>
- </inputActivityPort>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/Get_XML_result/out/attachmentList">
- <name>attachmentList</name>
- </OutputActivityPort>
- </outputActivityPort>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/Get_XML_result/out/result">
- <name>result</name>
- </OutputActivityPort>
- </outputActivityPort>
- </Activity>
- <Activity rdf:about="activity/Get_XML_result_type_defaultValue/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant"/>
- <name>Get_XML_result_type_defaultValue</name>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/Get_XML_result_type_defaultValue/out/value">
- <name>value</name>
- </OutputActivityPort>
- </outputActivityPort>
- </Activity>
- <Activity rdf:about="activity/Get_text_result/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/wsdl"/>
- <name>Get_text_result</name>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/Get_text_result/in/jobid">
- <name>jobid</name>
- </InputActivityPort>
- </inputActivityPort>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/Get_text_result/in/type">
- <name>type</name>
- </InputActivityPort>
- </inputActivityPort>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/Get_text_result/out/attachmentList">
- <name>attachmentList</name>
- </OutputActivityPort>
- </outputActivityPort>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/Get_text_result/out/result">
- <name>result</name>
- </OutputActivityPort>
- </outputActivityPort>
- </Activity>
- <Activity rdf:about="activity/Get_text_result_type_defaultValue/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant"/>
- <name>Get_text_result_type_defaultValue</name>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/Get_text_result_type_defaultValue/out/value">
- <name>value</name>
- </OutputActivityPort>
- </outputActivityPort>
- </Activity>
- <Activity rdf:about="activity/Input_data/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/xml-splitter/in"/>
- <name>Input_data</name>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/Input_data/in/content">
- <name>content</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- </InputActivityPort>
- </inputActivityPort>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/Input_data/in/type">
- <name>type</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- </InputActivityPort>
- </inputActivityPort>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/Input_data/out/output">
- <name>output</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- <granularPortDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</granularPortDepth>
- </OutputActivityPort>
- </outputActivityPort>
- </Activity>
- <Activity rdf:about="activity/Input_data_type_defaultValue/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant"/>
- <name>Input_data_type_defaultValue</name>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/Input_data_type_defaultValue/out/value">
- <name>value</name>
- </OutputActivityPort>
- </outputActivityPort>
- </Activity>
- <Activity rdf:about="activity/Job_params/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/xml-splitter/in"/>
- <name>Job_params</name>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/Job_params/in/app">
- <name>app</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- </InputActivityPort>
- </inputActivityPort>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/Job_params/in/async">
- <name>async</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- </InputActivityPort>
- </inputActivityPort>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/Job_params/in/crc">
- <name>crc</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- </InputActivityPort>
- </inputActivityPort>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/Job_params/in/email">
- <name>email</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- </InputActivityPort>
- </inputActivityPort>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/Job_params/in/goterms">
- <name>goterms</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- </InputActivityPort>
- </inputActivityPort>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/Job_params/in/outformat">
- <name>outformat</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- </InputActivityPort>
- </inputActivityPort>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/Job_params/in/seqtype">
- <name>seqtype</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- </InputActivityPort>
- </inputActivityPort>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/Job_params/in/trlen">
- <name>trlen</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- </InputActivityPort>
- </inputActivityPort>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/Job_params/in/trtable">
- <name>trtable</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- </InputActivityPort>
- </inputActivityPort>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/Job_params/out/output">
- <name>output</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- <granularPortDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</granularPortDepth>
- </OutputActivityPort>
- </outputActivityPort>
- </Activity>
- <Activity rdf:about="activity/Job_params_async_defaultValue/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant"/>
- <name>Job_params_async_defaultValue</name>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/Job_params_async_defaultValue/out/value">
- <name>value</name>
- </OutputActivityPort>
- </outputActivityPort>
- </Activity>
- <Activity rdf:about="activity/Job_params_crc_defaultValue/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant"/>
- <name>Job_params_crc_defaultValue</name>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/Job_params_crc_defaultValue/out/value">
- <name>value</name>
- </OutputActivityPort>
- </outputActivityPort>
- </Activity>
- <Activity rdf:about="activity/Job_params_goterms_defaultValue/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant"/>
- <name>Job_params_goterms_defaultValue</name>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/Job_params_goterms_defaultValue/out/value">
- <name>value</name>
- </OutputActivityPort>
- </outputActivityPort>
- </Activity>
- <Activity rdf:about="activity/Job_params_seqtype_defaultValue/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant"/>
- <name>Job_params_seqtype_defaultValue</name>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/Job_params_seqtype_defaultValue/out/value">
- <name>value</name>
- </OutputActivityPort>
- </outputActivityPort>
- </Activity>
- <Activity rdf:about="activity/Unpack_XML_result/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/beanshell"/>
- <name>Unpack_XML_result</name>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/Unpack_XML_result/in/bytes">
- <name>bytes</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- </InputActivityPort>
- </inputActivityPort>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/Unpack_XML_result/out/string">
- <name>string</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- <granularPortDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</granularPortDepth>
- </OutputActivityPort>
- </outputActivityPort>
- </Activity>
- <Activity rdf:about="activity/Unpack_text_result/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/beanshell"/>
- <name>Unpack_text_result</name>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/Unpack_text_result/in/bytes">
- <name>bytes</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- </InputActivityPort>
- </inputActivityPort>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/Unpack_text_result/out/string">
- <name>string</name>
- <portDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</portDepth>
- <granularPortDepth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</granularPortDepth>
- </OutputActivityPort>
- </outputActivityPort>
- </Activity>
- <Activity rdf:about="activity/checkStatus/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/wsdl"/>
- <name>checkStatus</name>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/checkStatus/in/jobid">
- <name>jobid</name>
- </InputActivityPort>
- </inputActivityPort>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/checkStatus/out/status">
- <name>status</name>
- </OutputActivityPort>
- </outputActivityPort>
- </Activity>
- <Activity rdf:about="activity/runInterProScan/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/wsdl"/>
- <name>runInterProScan</name>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/runInterProScan/in/content">
- <name>content</name>
- </InputActivityPort>
- </inputActivityPort>
- <inputActivityPort>
- <InputActivityPort rdf:about="activity/runInterProScan/in/params">
- <name>params</name>
- </InputActivityPort>
- </inputActivityPort>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/runInterProScan/out/attachmentList">
- <name>attachmentList</name>
- </OutputActivityPort>
- </outputActivityPort>
- <outputActivityPort>
- <OutputActivityPort rdf:about="activity/runInterProScan/out/jobid">
- <name>jobid</name>
- </OutputActivityPort>
- </outputActivityPort>
- </Activity>
- <Configuration rdf:about="configuration/Content_list/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/xml-splitter#Config"/>
- <name>Content_list</name>
- <configure rdf:resource="activity/Content_list/"/>
- <wrappedType:wrappedType xmlns:wrappedType="http://ns.taverna.org.uk/2010/activity/xml-splitter#" rdf:parseType="Literal">
- <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha">
- <s:arraytype name="content" optional="false" qname="{http://www.ebi.ac.uk/WSInterProScan}WSArrayofData" typename="WSArrayofData" unbounded="false" wrapped="false">
- <s:elementtype>
- <s:complextype name="" optional="false" qname="{http://www.ebi.ac.uk/WSInterProScan}data" typename="data" unbounded="false">
- <s:elements>
-<s:basetype name="type" optional="false" qname="data>type" typename="string" unbounded="false"/>
-<s:basetype name="content" optional="false" qname="data>content" typename="string" unbounded="false"/>
- </s:elements>
- </s:complextype>
- </s:elementtype>
- </s:arraytype>
- </s:extensions>
- </wrappedType:wrappedType>
- <inputPortDefinition>
- <InputPortDefinition>
- <dataType rdf:resource="java:java.lang.String"/>
- <definesInputPort rdf:resource="../../activity/Content_list/in/WSArrayofData"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/xml"/>
- </InputPortDefinition>
- </inputPortDefinition>
- <outputPortDefinition>
- <OutputPortDefinition>
- <definesOutputPort rdf:resource="../../activity/Content_list/out/output"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/xml"/>
- </OutputPortDefinition>
- </outputPortDefinition>
- </Configuration>
- <Configuration rdf:about="configuration/Format_as_GFF/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/beanshell#Config"/>
- <name>Format_as_GFF</name>
- <configure rdf:resource="activity/Format_as_GFF/"/>
- <script:script xmlns:script="http://ns.taverna.org.uk/2010/activity/beanshell#">import java.util.StringTokenizer;
-
-interproscan_gff = "";
-
-// Split into lines
-StringTokenizer tok1 = new StringTokenizer(interproscan_text, "\n");
-while(tok1.hasMoreElements()) {
- feat1 = tok1.nextElement();
- // Split into fields
- StringTokenizer tok2 = new StringTokenizer(feat1, "\t");
- fieldCount = 0;
- attributeStr = "";
- while(tok2.hasMoreElements()) {
- fieldCount++;
- fieldStr = tok2.nextElement();
- if(fieldCount < 2) { // First field is the ID
- interproscan_gff += fieldStr;
- }
- // The tool, feature, start and stop
- else if(fieldCount == 4 || (fieldCount > 5 && fieldCount < 9)) {
- interproscan_gff += "\t" + fieldStr;
- }
- // Score
- else if(fieldCount == 9) {
- if(fieldStr.equals("NA")) {
- interproscan_gff += "\t.";
- } else {
- interproscan_gff += "\t" + fieldStr;
- }
- }
- // Matching InterPro entry
- else if(fieldCount == 12 && !fieldStr.equals("NULL")) {
- attributeStr += fieldStr;
- }
- // Matching InterPro entry name
- else if(fieldCount == 13 && !fieldStr.equals("NULL")) {
- attributeStr += " " + fieldStr;
- }
- }
- interproscan_gff += "\t.\t.\tInterProScan";
- if(attributeStr.length() > 0) {
- interproscan_gff += " ; " + attributeStr;
- }
- interproscan_gff += "\n";
-}</script:script>
- <inputPortDefinition>
- <InputPortDefinition>
- <dataType rdf:resource="java:java.lang.String"/>
- <definesInputPort rdf:resource="../../activity/Format_as_GFF/in/interproscan_text"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
- </InputPortDefinition>
- </inputPortDefinition>
- <outputPortDefinition>
- <OutputPortDefinition>
- <definesOutputPort rdf:resource="../../activity/Format_as_GFF/out/interproscan_gff"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
- </OutputPortDefinition>
- </outputPortDefinition>
- </Configuration>
- <Configuration rdf:about="configuration/Get_XML_result/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/wsdl#Config"/>
- <name>Get_XML_result</name>
- <configure rdf:resource="activity/Get_XML_result/"/>
- <operation:operation xmlns:operation="http://ns.taverna.org.uk/2010/activity/wsdl#">
- <ns6:operation xmlns:ns6="http://ns.taverna.org.uk/2010/activity/wsdl/">
- <name:name xmlns:name="http://ns.taverna.org.uk/2010/activity/wsdl/operation#">poll</name:name>
- <wsdl:wsdl xmlns:wsdl="http://ns.taverna.org.uk/2010/activity/wsdl/operation#" rdf:resource="http://www.ebi.ac.uk/Tools/webservices/wsdl/WSInterProScan.wsdl"/>
- </ns6:operation>
- </operation:operation>
- </Configuration>
- <Configuration rdf:about="configuration/Get_XML_result_type_defaultValue/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant#Config"/>
- <name>Get_XML_result_type_defaultValue</name>
- <configure rdf:resource="activity/Get_XML_result_type_defaultValue/"/>
- <string:string xmlns:string="http://ns.taverna.org.uk/2010/activity/constant#">toolxml</string:string>
- </Configuration>
- <Configuration rdf:about="configuration/Get_text_result/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/wsdl#Config"/>
- <name>Get_text_result</name>
- <configure rdf:resource="activity/Get_text_result/"/>
- <operation:operation xmlns:operation="http://ns.taverna.org.uk/2010/activity/wsdl#">
- <ns6:operation xmlns:ns6="http://ns.taverna.org.uk/2010/activity/wsdl/">
- <name:name xmlns:name="http://ns.taverna.org.uk/2010/activity/wsdl/operation#">poll</name:name>
- <wsdl:wsdl xmlns:wsdl="http://ns.taverna.org.uk/2010/activity/wsdl/operation#" rdf:resource="http://www.ebi.ac.uk/Tools/webservices/wsdl/WSInterProScan.wsdl"/>
- </ns6:operation>
- </operation:operation>
- </Configuration>
- <Configuration rdf:about="configuration/Get_text_result_type_defaultValue/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant#Config"/>
- <name>Get_text_result_type_defaultValue</name>
- <configure rdf:resource="activity/Get_text_result_type_defaultValue/"/>
- <string:string xmlns:string="http://ns.taverna.org.uk/2010/activity/constant#">toolraw</string:string>
- </Configuration>
- <Configuration rdf:about="configuration/Input_data/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/xml-splitter#Config"/>
- <name>Input_data</name>
- <configure rdf:resource="activity/Input_data/"/>
- <wrappedType:wrappedType xmlns:wrappedType="http://ns.taverna.org.uk/2010/activity/xml-splitter#" rdf:parseType="Literal">
- <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha">
- <s:complextype name="" optional="false" qname="{http://www.ebi.ac.uk/WSInterProScan}data" typename="data" unbounded="false">
- <s:elements>
- <s:basetype name="type" optional="false" qname="data>type" typename="string" unbounded="false"/>
- <s:basetype name="content" optional="false" qname="data>content" typename="string" unbounded="false"/>
- </s:elements>
- </s:complextype>
- </s:extensions>
- </wrappedType:wrappedType>
- <inputPortDefinition>
- <InputPortDefinition>
- <dataType rdf:resource="java:java.lang.String"/>
- <definesInputPort rdf:resource="../../activity/Input_data/in/content"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
- </InputPortDefinition>
- </inputPortDefinition>
- <inputPortDefinition>
- <InputPortDefinition>
- <dataType rdf:resource="java:java.lang.String"/>
- <definesInputPort rdf:resource="../../activity/Input_data/in/type"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
- </InputPortDefinition>
- </inputPortDefinition>
- <outputPortDefinition>
- <OutputPortDefinition>
- <definesOutputPort rdf:resource="../../activity/Input_data/out/output"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/xml"/>
- </OutputPortDefinition>
- </outputPortDefinition>
- </Configuration>
- <Configuration rdf:about="configuration/Input_data_type_defaultValue/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant#Config"/>
- <name>Input_data_type_defaultValue</name>
- <configure rdf:resource="activity/Input_data_type_defaultValue/"/>
- <string:string xmlns:string="http://ns.taverna.org.uk/2010/activity/constant#">sequence</string:string>
- </Configuration>
- <Configuration rdf:about="configuration/Job_params/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/xml-splitter#Config"/>
- <name>Job_params</name>
- <configure rdf:resource="activity/Job_params/"/>
- <wrappedType:wrappedType xmlns:wrappedType="http://ns.taverna.org.uk/2010/activity/xml-splitter#" rdf:parseType="Literal">
- <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha">
- <s:complextype name="params" optional="false" qname="{http://www.ebi.ac.uk/WSInterProScan}inputParams" typename="inputParams" unbounded="false">
- <s:elements>
- <s:basetype name="app" optional="false" qname="inputParams>app" typename="string" unbounded="false"/>
- <s:basetype name="crc" optional="false" qname="inputParams>crc" typename="boolean" unbounded="false"/>
- <s:basetype name="seqtype" optional="false" qname="inputParams>seqtype" typename="string" unbounded="false"/>
- <s:basetype name="trlen" optional="false" qname="inputParams>trlen" typename="int" unbounded="false"/>
- <s:basetype name="trtable" optional="false" qname="inputParams>trtable" typename="int" unbounded="false"/>
- <s:basetype name="goterms" optional="false" qname="inputParams>goterms" typename="boolean" unbounded="false"/>
- <s:basetype name="async" optional="false" qname="inputParams>async" typename="boolean" unbounded="false"/>
- <s:basetype name="outformat" optional="false" qname="inputParams>outformat" typename="string" unbounded="false"/>
- <s:basetype name="email" optional="false" qname="inputParams>email" typename="string" unbounded="false"/>
- </s:elements>
- </s:complextype>
- </s:extensions>
- </wrappedType:wrappedType>
- <inputPortDefinition>
- <InputPortDefinition>
- <dataType rdf:resource="java:java.lang.String"/>
- <definesInputPort rdf:resource="../../activity/Job_params/in/app"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
- </InputPortDefinition>
- </inputPortDefinition>
- <inputPortDefinition>
- <InputPortDefinition>
- <dataType rdf:resource="java:java.lang.String"/>
- <definesInputPort rdf:resource="../../activity/Job_params/in/async"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
- </InputPortDefinition>
- </inputPortDefinition>
- <inputPortDefinition>
- <InputPortDefinition>
- <dataType rdf:resource="java:java.lang.String"/>
- <definesInputPort rdf:resource="../../activity/Job_params/in/crc"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
- </InputPortDefinition>
- </inputPortDefinition>
- <inputPortDefinition>
- <InputPortDefinition>
- <dataType rdf:resource="java:java.lang.String"/>
- <definesInputPort rdf:resource="../../activity/Job_params/in/email"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
- </InputPortDefinition>
- </inputPortDefinition>
- <inputPortDefinition>
- <InputPortDefinition>
- <dataType rdf:resource="java:java.lang.String"/>
- <definesInputPort rdf:resource="../../activity/Job_params/in/goterms"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
- </InputPortDefinition>
- </inputPortDefinition>
- <inputPortDefinition>
- <InputPortDefinition>
- <dataType rdf:resource="java:java.lang.String"/>
- <definesInputPort rdf:resource="../../activity/Job_params/in/outformat"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
- </InputPortDefinition>
- </inputPortDefinition>
- <inputPortDefinition>
- <InputPortDefinition>
- <dataType rdf:resource="java:java.lang.String"/>
- <definesInputPort rdf:resource="../../activity/Job_params/in/seqtype"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
- </InputPortDefinition>
- </inputPortDefinition>
- <inputPortDefinition>
- <InputPortDefinition>
- <dataType rdf:resource="java:java.lang.String"/>
- <definesInputPort rdf:resource="../../activity/Job_params/in/trlen"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
- </InputPortDefinition>
- </inputPortDefinition>
- <inputPortDefinition>
- <InputPortDefinition>
- <dataType rdf:resource="java:java.lang.String"/>
- <definesInputPort rdf:resource="../../activity/Job_params/in/trtable"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
- </InputPortDefinition>
- </inputPortDefinition>
- <outputPortDefinition>
- <OutputPortDefinition>
- <definesOutputPort rdf:resource="../../activity/Job_params/out/output"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/xml"/>
- </OutputPortDefinition>
- </outputPortDefinition>
- </Configuration>
- <Configuration rdf:about="configuration/Job_params_async_defaultValue/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant#Config"/>
- <name>Job_params_async_defaultValue</name>
- <configure rdf:resource="activity/Job_params_async_defaultValue/"/>
- <string:string xmlns:string="http://ns.taverna.org.uk/2010/activity/constant#">1</string:string>
- </Configuration>
- <Configuration rdf:about="configuration/Job_params_crc_defaultValue/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant#Config"/>
- <name>Job_params_crc_defaultValue</name>
- <configure rdf:resource="activity/Job_params_crc_defaultValue/"/>
- <string:string xmlns:string="http://ns.taverna.org.uk/2010/activity/constant#">1</string:string>
- </Configuration>
- <Configuration rdf:about="configuration/Job_params_goterms_defaultValue/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant#Config"/>
- <name>Job_params_goterms_defaultValue</name>
- <configure rdf:resource="activity/Job_params_goterms_defaultValue/"/>
- <string:string xmlns:string="http://ns.taverna.org.uk/2010/activity/constant#">1</string:string>
- </Configuration>
- <Configuration rdf:about="configuration/Job_params_seqtype_defaultValue/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/constant#Config"/>
- <name>Job_params_seqtype_defaultValue</name>
- <configure rdf:resource="activity/Job_params_seqtype_defaultValue/"/>
- <string:string xmlns:string="http://ns.taverna.org.uk/2010/activity/constant#">p</string:string>
- </Configuration>
- <Configuration rdf:about="configuration/Unpack_XML_result/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/beanshell#Config"/>
- <name>Unpack_XML_result</name>
- <configure rdf:resource="activity/Unpack_XML_result/"/>
- <script:script xmlns:script="http://ns.taverna.org.uk/2010/activity/beanshell#">string = new String(bytes);
-</script:script>
- <inputPortDefinition>
- <InputPortDefinition>
- <dataType rdf:resource="java:[B"/>
- <definesInputPort rdf:resource="../../activity/Unpack_XML_result/in/bytes"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/application/octet-stream"/>
- </InputPortDefinition>
- </inputPortDefinition>
- <outputPortDefinition>
- <OutputPortDefinition>
- <definesOutputPort rdf:resource="../../activity/Unpack_XML_result/out/string"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
- </OutputPortDefinition>
- </outputPortDefinition>
- </Configuration>
- <Configuration rdf:about="configuration/Unpack_text_result/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/beanshell#Config"/>
- <name>Unpack_text_result</name>
- <configure rdf:resource="activity/Unpack_text_result/"/>
- <script:script xmlns:script="http://ns.taverna.org.uk/2010/activity/beanshell#">string = new String(bytes);
-</script:script>
- <inputPortDefinition>
- <InputPortDefinition>
- <dataType rdf:resource="java:[B"/>
- <definesInputPort rdf:resource="../../activity/Unpack_text_result/in/bytes"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/application/octet-stream"/>
- </InputPortDefinition>
- </inputPortDefinition>
- <outputPortDefinition>
- <OutputPortDefinition>
- <definesOutputPort rdf:resource="../../activity/Unpack_text_result/out/string"/>
- <expectedMimeType rdf:resource="http://purl.org/NET/mediatypes/text/plain"/>
- </OutputPortDefinition>
- </outputPortDefinition>
- </Configuration>
- <Configuration rdf:about="configuration/checkStatus/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/wsdl#Config"/>
- <name>checkStatus</name>
- <configure rdf:resource="activity/checkStatus/"/>
- <operation:operation xmlns:operation="http://ns.taverna.org.uk/2010/activity/wsdl#">
- <ns6:operation xmlns:ns6="http://ns.taverna.org.uk/2010/activity/wsdl/">
- <name:name xmlns:name="http://ns.taverna.org.uk/2010/activity/wsdl/operation#">checkStatus</name:name>
- <wsdl:wsdl xmlns:wsdl="http://ns.taverna.org.uk/2010/activity/wsdl/operation#" rdf:resource="http://www.ebi.ac.uk/Tools/webservices/wsdl/WSInterProScan.wsdl"/>
- </ns6:operation>
- </operation:operation>
- </Configuration>
- <Configuration rdf:about="configuration/runInterProScan/">
- <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/activity/wsdl#Config"/>
- <name>runInterProScan</name>
- <configure rdf:resource="activity/runInterProScan/"/>
- <operation:operation xmlns:operation="http://ns.taverna.org.uk/2010/activity/wsdl#">
- <ns6:operation xmlns:ns6="http://ns.taverna.org.uk/2010/activity/wsdl/">
- <name:name xmlns:name="http://ns.taverna.org.uk/2010/activity/wsdl/operation#">runInterProScan</name:name>
- <wsdl:wsdl xmlns:wsdl="http://ns.taverna.org.uk/2010/activity/wsdl/operation#" rdf:resource="http://www.ebi.ac.uk/Tools/webservices/wsdl/WSInterProScan.wsdl"/>
- </ns6:operation>
- </operation:operation>
- </Configuration>
-</rdf:RDF>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/316e4a8a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/roevo-test.xml
----------------------------------------------------------------------
diff --git a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/roevo-test.xml b/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/roevo-test.xml
deleted file mode 100644
index 4b2415c..0000000
--- a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/roevo-test.xml
+++ /dev/null
@@ -1,71 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements. See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership. The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License. You may obtain a copy of the License at
-
- http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied. See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-
-<rdf:RDF xmlns="http://purl.org/wf4ever/roevo#"
- xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
- xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:dc="http://purl.org/dc/elements/1.1/"
- xmlns:prov="http://www.w3.org/ns/prov#"
- xmlns:dcterms="http://purl.org/dc/terms/" xmlns:owl="http://www.w3.org/2002/07/owl#"
- xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:type="RoEvoDocument"
- xml:base="http://example.com/test/base"
- xsi:schemaLocation="http://purl.org/wf4ever/roevo# ../../../../../../../main/resources/uk/org/taverna/scufl2/rdfxml/xsd/roevo.xsd">
- <VersionableResource rdf:about="v3">
- <wasChangedBy>
- <ChangeSpecification>
- <rdf:type rdf:resource="http://example.com/InsertNestedWorkflow"/>
- <fromVersion rdf:resource="v2" />
- <hasChange>
- <Removal>
- <relatedResource rdf:resource="http://example.net/removed-item"/>
- <relatedResource rdf:resource="removed-item2"/>
- </Removal>
- </hasChange>
- <hasChange>
- <Addition>
- <relatedResource rdf:resource="nested-workflow1" />
- <relatedResource rdf:resource="http://example.net/nested-workflow2" />
- </Addition>
- </hasChange>
- <hasChange>
- <Modification>
- <relatedResource rdf:resource="modified"/>
- <relatedResource rdf:resource="http://example.net/modified2"/>
- </Modification>
- </hasChange>
- </ChangeSpecification>
- </wasChangedBy>
- <prov:generatedAtTime rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2012-12-24T18:00:00+01:00</prov:generatedAtTime>
- <prov:wasRevisionOf rdf:resource="v2" />
- <prov:hadOriginalSource rdf:resource="http://example.org/originalSource1"/>
- <prov:hadOriginalSource rdf:resource="originalSource2"/>
- <prov:wasAttributedTo rdf:resource="../Fred" />
- <prov:wasAttributedTo rdf:resource="http://example.net/SomeoneElse#me" />
- </VersionableResource>
- <VersionableResource rdf:about="v2">
- <prov:generatedAtTime rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2010-01-15T11:00:00+01:00</prov:generatedAtTime>
- <prov:wasRevisionOf rdf:resource="http://example.net/v1" />
- </VersionableResource>
- <VersionableResource rdf:about="http://example.net/v1">
- <prov:generatedAtTime rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2010-01-15T11:00:00+01:00</prov:generatedAtTime>
- <prov:wasRevisionOf rdf:resource="http://example.net/v0" />
- </VersionableResource>
-</rdf:RDF>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/316e4a8a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/update-bundle.sh
----------------------------------------------------------------------
diff --git a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/update-bundle.sh b/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/update-bundle.sh
deleted file mode 100644
index 8e422b3..0000000
--- a/taverna-scufl2-rdfxml/src/test/resources/org/apache/taverna/scufl2/rdfxml/update-bundle.sh
+++ /dev/null
@@ -1,26 +0,0 @@
-#!/bin/sh
-#
-#
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements. See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership. The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License. You may obtain a copy of the License at
-#
-# http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied. See the License for the
-# specific language governing permissions and limitations
-# under the License.
-#
-#
-set -e
-rm example.scufl2
-cd example
-zip -0 -X ../example.scufl2 mimetype
-zip -r ../example.scufl2 . -x mimetype
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/316e4a8a/taverna-scufl2-schemas/pom.xml
----------------------------------------------------------------------
diff --git a/taverna-scufl2-schemas/pom.xml b/taverna-scufl2-schemas/pom.xml
deleted file mode 100644
index 98258bc..0000000
--- a/taverna-scufl2-schemas/pom.xml
+++ /dev/null
@@ -1,75 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
- Licensed to the Apache Software Foundation (ASF) under one or more
- contributor license agreements. See the NOTICE file distributed with
- this work for additional information regarding copyright ownership.
- The ASF licenses this file to You under the Apache License, Version 2.0
- (the "License"); you may not use this file except in compliance with
- the License. You may obtain a copy of the License at
-
- http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing, software
- distributed under the License is distributed on an "AS IS" BASIS,
- WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- See the License for the specific language governing permissions and
- limitations under the License.
--->
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
- <modelVersion>4.0.0</modelVersion>
- <parent>
- <groupId>org.apache.taverna.language</groupId>
- <artifactId>taverna-language</artifactId>
- <version>0.16.1-incubating-SNAPSHOT</version>
- </parent>
- <artifactId>taverna-scufl2-schemas</artifactId>
- <packaging>bundle</packaging>
- <name>Apache Taverna Scufl 2 Schemas</name>
- <description>Schemas for SCUFL2</description>
- <build>
- <plugins>
- <plugin>
- <groupId>org.apache.felix</groupId>
- <artifactId>maven-bundle-plugin</artifactId>
- <!-- NO!
- <configuration>
- <instructions>
- <Export-Package>org.apache.taverna.scufl2.api.io;provide:=true</Export-Package>
- </instructions>
- </configuration>
- -->
- </plugin>
- <plugin>
- <groupId>org.jvnet.jaxb2.maven2</groupId>
- <artifactId>maven-jaxb2-plugin</artifactId>
- <executions>
- <execution>
- <goals>
- <goal>generate</goal>
- </goals>
- </execution>
- </executions>
- <configuration>
- <schemaDirectory>src/main/resources/org/apache/taverna/scufl2/rdfxml/xsd/</schemaDirectory>
- </configuration>
- </plugin>
-
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-compiler-plugin</artifactId>
- <configuration>
- <source>1.7</source>
- <target>1.7</target>
- </configuration>
- </plugin>
- <plugin>
- <groupId>org.apache.rat</groupId>
- <artifactId>apache-rat-plugin</artifactId>
- </plugin>
- </plugins>
- </build> <dependencies>
- </dependencies>
- <repositories>
-
- </repositories>
-</project>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/316e4a8a/taverna-scufl2-schemas/src/main/resources/META-INF/NOTICE.vm
----------------------------------------------------------------------
diff --git a/taverna-scufl2-schemas/src/main/resources/META-INF/NOTICE.vm b/taverna-scufl2-schemas/src/main/resources/META-INF/NOTICE.vm
deleted file mode 100644
index f8b48e6..0000000
--- a/taverna-scufl2-schemas/src/main/resources/META-INF/NOTICE.vm
+++ /dev/null
@@ -1,39 +0,0 @@
-##
-## Licensed to the Apache Software Foundation (ASF) under one
-## or more contributor license agreements. See the NOTICE file
-## distributed with this work for additional information
-## regarding copyright ownership. The ASF licenses this file
-## to you under the Apache License, Version 2.0 (the
-## "License"); you may not use this file except in compliance
-## with the License. You may obtain a copy of the License at
-##
-## http://www.apache.org/licenses/LICENSE-2.0
-##
-## Unless required by applicable law or agreed to in writing,
-## software distributed under the License is distributed on an
-## "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-## KIND, either express or implied. See the License for the
-## specific language governing permissions and limitations
-## under the License.
-##
-
-#if ($projectName)$projectName#else${project.name}#end
-
-Copyright ${projectTimespan}#if($project.organization.name) $project.organization.name#else The Apache Software Foundation#end
-
-
-This product includes software developed at
-The Apache Software Foundation (http://www.apache.org/).
-
-
-# xml.xsd
-
-Copyright © 2008 W3C® (MIT, ERCIM, Keio, Beihang). This software or
-document includes material copied from or derived from:
-
-- Extensible Markup Language (XML) 1.0 (Fifth Edition)
- W3C Recommendation 26 November 2008
- http://www.w3.org/2001/xml.xsd
- http://www.w3.org/TR/xml/
-
-