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Posted to dev@ctakes.apache.org by Peter Klügl <pe...@averbis.com> on 2019/07/08 15:25:01 UTC
Averbis released type systems as open source
Hi,
Averbis released a selection of type systems as open source (Apache License 2.0) which also cover many use cases in clinical and medical information extraction.
I know that cTAKES has of course well-established type systems, but a comparison of different approaches to model information can lead to fruitful discussions IMHO. Feel free to contact me :-) (or talk to me @ACL2019_Italy)
https://github.com/averbis/core-typesystems
Types for linguistic preprocessing, generic types like 'Concept' as well
as domain-independent entities like 'Date' or 'Measurement'.
https://github.com/averbis/health-typesystems
Types for specific medical entities and relationships like 'Diagnosis',
'Medication' and also for more specialized types like 'HLA' or
'VisualAcuity'.
https://github.com/averbis/pharma-typesystems
Types mainly for IDMP.
Artifacts with descriptions, types.txt, JCas cover classes and some
generated asciidoc are available at maven central.
Best,
Peter
--
Dr. Peter Klügl
R&D Text Mining/Machine Learning
Averbis GmbH
Salzstr. 15
79098 Freiburg
Germany
Fon: +49 761 708 394 0
Fax: +49 761 708 394 10
Email: peter.kluegl@averbis.com
Web: https://averbis.com
Headquarters: Freiburg im Breisgau
Register Court: Amtsgericht Freiburg im Breisgau, HRB 701080
Managing Directors: Dr. med. Philipp Daumke, Dr. Kornél Markó
Re: Averbis released type systems as open source
Posted by Peter Klügl <pe...@averbis.com>.
Hi Peter,
there are currently no plans to open source the annotators or a
selection of annotators.
However, the release of the type systems is a part of opening Averbis in
that direction and to give something back to the community (in addition
to the UIMA patches and the Ruta development).
I could image that we will follow that path and open source some
components in future, but as I said there are no plans yet.
Best,
Peter
Am 08.07.2019 um 17:57 schrieb Peter Abramowitsch:
> Thank you for this news!
> Will annotators using these type systems also be open sourced? And if so,
> in for which languages?
>
> Peter
>
> On Mon, Jul 8, 2019 at 8:25 AM Peter Klügl <pe...@averbis.com> wrote:
>
>> Hi,
>>
>>
>> Averbis released a selection of type systems as open source (Apache
>> License 2.0) which also cover many use cases in clinical and medical
>> information extraction.
>>
>>
>> I know that cTAKES has of course well-established type systems, but a
>> comparison of different approaches to model information can lead to
>> fruitful discussions IMHO. Feel free to contact me :-) (or talk to me
>> @ACL2019_Italy)
>>
>>
>>
>> https://github.com/averbis/core-typesystems
>>
>> Types for linguistic preprocessing, generic types like 'Concept' as well
>> as domain-independent entities like 'Date' or 'Measurement'.
>>
>>
>> https://github.com/averbis/health-typesystems
>>
>> Types for specific medical entities and relationships like 'Diagnosis',
>> 'Medication' and also for more specialized types like 'HLA' or
>> 'VisualAcuity'.
>>
>>
>> https://github.com/averbis/pharma-typesystems
>>
>> Types mainly for IDMP.
>>
>>
>> Artifacts with descriptions, types.txt, JCas cover classes and some
>> generated asciidoc are available at maven central.
>>
>>
>> Best,
>>
>>
>> Peter
>>
>> --
>> Dr. Peter Klügl
>> R&D Text Mining/Machine Learning
>>
>> Averbis GmbH
>> Salzstr. 15
>> 79098 Freiburg
>> Germany
>>
>> Fon: +49 761 708 394 0
>> Fax: +49 761 708 394 10
>> Email: peter.kluegl@averbis.com
>> Web: https://averbis.com
>>
>> Headquarters: Freiburg im Breisgau
>> Register Court: Amtsgericht Freiburg im Breisgau, HRB 701080
>> Managing Directors: Dr. med. Philipp Daumke, Dr. Kornél Markó
>>
>>
--
Peter Klügl
R&D Text Mining/Machine Learning
Averbis GmbH
Salzstr. 15
79098 Freiburg
Germany
Fon: +49 761 708 394 0
Fax: +49 761 708 394 10
Email: peter.kluegl@averbis.com
Web: https://averbis.com
Headquarters: Freiburg im Breisgau
Register Court: Amtsgericht Freiburg im Breisgau, HRB 701080
Managing Directors: Dr. med. Philipp Daumke, Dr. Kornél Markó
Re: Averbis released type systems as open source
Posted by Peter Abramowitsch <pa...@gmail.com>.
Thank you for this news!
Will annotators using these type systems also be open sourced? And if so,
in for which languages?
Peter
On Mon, Jul 8, 2019 at 8:25 AM Peter Klügl <pe...@averbis.com> wrote:
> Hi,
>
>
> Averbis released a selection of type systems as open source (Apache
> License 2.0) which also cover many use cases in clinical and medical
> information extraction.
>
>
> I know that cTAKES has of course well-established type systems, but a
> comparison of different approaches to model information can lead to
> fruitful discussions IMHO. Feel free to contact me :-) (or talk to me
> @ACL2019_Italy)
>
>
>
> https://github.com/averbis/core-typesystems
>
> Types for linguistic preprocessing, generic types like 'Concept' as well
> as domain-independent entities like 'Date' or 'Measurement'.
>
>
> https://github.com/averbis/health-typesystems
>
> Types for specific medical entities and relationships like 'Diagnosis',
> 'Medication' and also for more specialized types like 'HLA' or
> 'VisualAcuity'.
>
>
> https://github.com/averbis/pharma-typesystems
>
> Types mainly for IDMP.
>
>
> Artifacts with descriptions, types.txt, JCas cover classes and some
> generated asciidoc are available at maven central.
>
>
> Best,
>
>
> Peter
>
> --
> Dr. Peter Klügl
> R&D Text Mining/Machine Learning
>
> Averbis GmbH
> Salzstr. 15
> 79098 Freiburg
> Germany
>
> Fon: +49 761 708 394 0
> Fax: +49 761 708 394 10
> Email: peter.kluegl@averbis.com
> Web: https://averbis.com
>
> Headquarters: Freiburg im Breisgau
> Register Court: Amtsgericht Freiburg im Breisgau, HRB 701080
> Managing Directors: Dr. med. Philipp Daumke, Dr. Kornél Markó
>
>