You are viewing a plain text version of this content. The canonical link for it is here.
Posted to dev@ctakes.apache.org by samir chabou <sa...@yahoo.com.INVALID> on 2014/11/26 07:24:26 UTC
Re: cTakes Document Preprocessor Component Error
I'm trying to install cTAKES in eclipse but i got an error when i try a checkout as maven project from SCM.the error is:
',any help ?Thanks
On Thursday, November 14, 2013 3:38 PM, "Masanz, James J." <Ma...@mayo.edu> wrote:
Try adding
org.apache.ctakes.typesystem.types.TypeSystem
as the type system.
So the source looks like:
<typeSystemDescription>
<imports>
<import name="org.apache.ctakes.typesystem.types.TypeSystem"/>
</imports>
</typeSystemDescription>
Hope that helps
-- James
From: user-return-336-Masanz.James=mayo.edu@ctakes.apache.org [mailto:user-return-336-Masanz.James=mayo.edu@ctakes.apache.org] On Behalf Of digital paula
Sent: Thursday, November 14, 2013 1:42 PM
To: user@ctakes.apache.org
Subject: cTakes Document Preprocessor Component Error
Hello cTakes Community,
I'm back after hanging out with the UIMA guys :-) for a while, getting a better grasp of the UIMA framework that cTakes sits on. I'm exploring and understanding cTakes components and starting with the Document Preprocessor:
https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.0+-+Document+Preprocessor
I loaded the testpatient_cn_1.xml file in the CVD cTakes launcher and loaded the AggregateAE descriptor. It loaded but when I ran it, I got the following error:
Caused by: org.apache.uima.cas.CASRuntimeException: JCas type "org.apache.ctakes.typesystem.type.textspan.Segment" used in Java code, but was not declared in the XML type descriptor.
I looked in the AggregatorAE descriptor file along with it's dependency CdaCasInitializer.xml and see both have nothing in the Type System tab however I do see a handful of types specified on the Capabilities tab including "org.apache.ctakes.typesystem.type.textspan.Segment"
So I added Segment type to the Type System tab. I reran and got this error:
11/14/13 2:23:39 PM - 14: org.apache.uima.tools.cvd.MainFrame.handleException(527): SEVERE: Feature "id" is not defined for type "org.apache.ctakes.typesystem.type.textspan.Segment".
org.apache.uima.analysis_engine.AnalysisEngineProcessException: Feature "id" is not defined for type "org.apache.ctakes.typesystem.type.textspan.Segment".
Is there a file descriptor already setup maybe in another install with the necessary types/features to run the Document Preprocessor or will I manually have to add all of them? If not, I'd like to use UIMAfit to create the types/features to use with the Document Preprocessor as opposed to manually updating this descriptor with all the types and features needed. Can someone advise?
Thanks.
Regards,
Paula
Re: cTakes Document Preprocessor Component Error
Posted by samir chabou <sa...@yahoo.com>.
Hi,thank you for replying. however, i don't have SVN Client under SVN.thanks
On Wednesday, November 26, 2014 1:25 AM, samir chabou <sa...@yahoo.com> wrote:
I'm trying to install cTAKES in eclipse but i got an error when i try a checkout as maven project from SCM.the error is:
',any help ?Thanks
On Thursday, November 14, 2013 3:38 PM, "Masanz, James J." <Ma...@mayo.edu> wrote:
Try adding
org.apache.ctakes.typesystem.types.TypeSystem
as the type system.
So the source looks like:
<typeSystemDescription>
<imports>
<import name="org.apache.ctakes.typesystem.types.TypeSystem"/>
</imports>
</typeSystemDescription>
Hope that helps
-- James
From: user-return-336-Masanz.James=mayo.edu@ctakes.apache.org [mailto:user-return-336-Masanz.James=mayo.edu@ctakes.apache.org] On Behalf Of digital paula
Sent: Thursday, November 14, 2013 1:42 PM
To: user@ctakes.apache.org
Subject: cTakes Document Preprocessor Component Error
Hello cTakes Community,
I'm back after hanging out with the UIMA guys :-) for a while, getting a better grasp of the UIMA framework that cTakes sits on. I'm exploring and understanding cTakes components and starting with the Document Preprocessor:
https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.0+-+Document+Preprocessor
I loaded the testpatient_cn_1.xml file in the CVD cTakes launcher and loaded the AggregateAE descriptor. It loaded but when I ran it, I got the following error:
Caused by: org.apache.uima.cas.CASRuntimeException: JCas type "org.apache.ctakes.typesystem.type.textspan.Segment" used in Java code, but was not declared in the XML type descriptor.
I looked in the AggregatorAE descriptor file along with it's dependency CdaCasInitializer.xml and see both have nothing in the Type System tab however I do see a handful of types specified on the Capabilities tab including "org.apache.ctakes.typesystem.type.textspan.Segment"
So I added Segment type to the Type System tab. I reran and got this error:
11/14/13 2:23:39 PM - 14: org.apache.uima.tools.cvd.MainFrame.handleException(527): SEVERE: Feature "id" is not defined for type "org.apache.ctakes.typesystem.type.textspan.Segment".
org.apache.uima.analysis_engine.AnalysisEngineProcessException: Feature "id" is not defined for type "org.apache.ctakes.typesystem.type.textspan.Segment".
Is there a file descriptor already setup maybe in another install with the necessary types/features to run the Document Preprocessor or will I manually have to add all of them? If not, I'd like to use UIMAfit to create the types/features to use with the Document Preprocessor as opposed to manually updating this descriptor with all the types and features needed. Can someone advise?
Thanks.
Regards,
Paula
Re: cTakes Document Preprocessor Component Error
Posted by britt fitch <br...@wiredinformatics.com>.
Hi Samir, it looks like you might have the wrong SVN client option specified. If I recall correctly, in Windows it defaults to ‘JavaHL’ and you want to go to:
‘Preferences' > ‘Team' > 'SVN' > 'SVN Client’ and select the ‘SVNKit’ option from the drop down.
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
Britt.Fitch@wiredinformatics.com
On Nov 26, 2014, at 1:24 AM, samir chabou <sa...@yahoo.com> wrote:
> I'm trying to install cTAKES in eclipse but i got an error when i try a checkout as maven project from SCM.
> the error is:
> <blob.jpeg>
> ',any help ?
> Thanks
>
>
> On Thursday, November 14, 2013 3:38 PM, "Masanz, James J." <Ma...@mayo.edu> wrote:
>
>
> Try adding
>
> org.apache.ctakes.typesystem.types.TypeSystem
>
> as the type system.
>
> So the source looks like:
>
> <typeSystemDescription>
> <imports>
> <import name="org.apache.ctakes.typesystem.types.TypeSystem"/>
> </imports>
> </typeSystemDescription>
>
> Hope that helps
> -- James
>
>
> From: user-return-336-Masanz.James=mayo.edu@ctakes.apache.org [mailto:user-return-336-Masanz.James=mayo.edu@ctakes.apache.org] On Behalf Of digital paula
> Sent: Thursday, November 14, 2013 1:42 PM
> To: user@ctakes.apache.org
> Subject: cTakes Document Preprocessor Component Error
>
> Hello cTakes Community,
>
> I'm back after hanging out with the UIMA guys :-) for a while, getting a better grasp of the UIMA framework that cTakes sits on. I'm exploring and understanding cTakes components and starting with the Document Preprocessor:
> https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.0+-+Document+Preprocessor
>
> I loaded the testpatient_cn_1.xml file in the CVD cTakes launcher and loaded the AggregateAE descriptor. It loaded but when I ran it, I got the following error:
>
> Caused by: org.apache.uima.cas.CASRuntimeException: JCas type "org.apache.ctakes.typesystem.type.textspan.Segment" used in Java code, but was not declared in the XML type descriptor.
>
> I looked in the AggregatorAE descriptor file along with it's dependency CdaCasInitializer.xml and see both have nothing in the Type System tab however I do see a handful of types specified on the Capabilities tab including "org.apache.ctakes.typesystem.type.textspan.Segment"
>
> So I added Segment type to the Type System tab. I reran and got this error:
>
> 11/14/13 2:23:39 PM - 14: org.apache.uima.tools.cvd.MainFrame.handleException(527): SEVERE: Feature "id" is not defined for type "org.apache.ctakes.typesystem.type.textspan.Segment".
> org.apache.uima.analysis_engine.AnalysisEngineProcessException: Feature "id" is not defined for type "org.apache.ctakes.typesystem.type.textspan.Segment".
> Is there a file descriptor already setup maybe in another install with the necessary types/features to run the Document Preprocessor or will I manually have to add all of them? If not, I'd like to use UIMAfit to create the types/features to use with the Document Preprocessor as opposed to manually updating this descriptor with all the types and features needed. Can someone advise?
>
> Thanks.
>
> Regards,
> Paula
>
>
>
>
>
>
>
> <blob.jpeg>
Re: cTakes Document Preprocessor Component Error
Posted by britt fitch <br...@wiredinformatics.com>.
Hi Samir, it looks like you might have the wrong SVN client option specified. If I recall correctly, in Windows it defaults to ‘JavaHL’ and you want to go to:
‘Preferences' > ‘Team' > 'SVN' > 'SVN Client’ and select the ‘SVNKit’ option from the drop down.
Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
Britt.Fitch@wiredinformatics.com
On Nov 26, 2014, at 1:24 AM, samir chabou <sa...@yahoo.com> wrote:
> I'm trying to install cTAKES in eclipse but i got an error when i try a checkout as maven project from SCM.
> the error is:
> <blob.jpeg>
> ',any help ?
> Thanks
>
>
> On Thursday, November 14, 2013 3:38 PM, "Masanz, James J." <Ma...@mayo.edu> wrote:
>
>
> Try adding
>
> org.apache.ctakes.typesystem.types.TypeSystem
>
> as the type system.
>
> So the source looks like:
>
> <typeSystemDescription>
> <imports>
> <import name="org.apache.ctakes.typesystem.types.TypeSystem"/>
> </imports>
> </typeSystemDescription>
>
> Hope that helps
> -- James
>
>
> From: user-return-336-Masanz.James=mayo.edu@ctakes.apache.org [mailto:user-return-336-Masanz.James=mayo.edu@ctakes.apache.org] On Behalf Of digital paula
> Sent: Thursday, November 14, 2013 1:42 PM
> To: user@ctakes.apache.org
> Subject: cTakes Document Preprocessor Component Error
>
> Hello cTakes Community,
>
> I'm back after hanging out with the UIMA guys :-) for a while, getting a better grasp of the UIMA framework that cTakes sits on. I'm exploring and understanding cTakes components and starting with the Document Preprocessor:
> https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.0+-+Document+Preprocessor
>
> I loaded the testpatient_cn_1.xml file in the CVD cTakes launcher and loaded the AggregateAE descriptor. It loaded but when I ran it, I got the following error:
>
> Caused by: org.apache.uima.cas.CASRuntimeException: JCas type "org.apache.ctakes.typesystem.type.textspan.Segment" used in Java code, but was not declared in the XML type descriptor.
>
> I looked in the AggregatorAE descriptor file along with it's dependency CdaCasInitializer.xml and see both have nothing in the Type System tab however I do see a handful of types specified on the Capabilities tab including "org.apache.ctakes.typesystem.type.textspan.Segment"
>
> So I added Segment type to the Type System tab. I reran and got this error:
>
> 11/14/13 2:23:39 PM - 14: org.apache.uima.tools.cvd.MainFrame.handleException(527): SEVERE: Feature "id" is not defined for type "org.apache.ctakes.typesystem.type.textspan.Segment".
> org.apache.uima.analysis_engine.AnalysisEngineProcessException: Feature "id" is not defined for type "org.apache.ctakes.typesystem.type.textspan.Segment".
> Is there a file descriptor already setup maybe in another install with the necessary types/features to run the Document Preprocessor or will I manually have to add all of them? If not, I'd like to use UIMAfit to create the types/features to use with the Document Preprocessor as opposed to manually updating this descriptor with all the types and features needed. Can someone advise?
>
> Thanks.
>
> Regards,
> Paula
>
>
>
>
>
>
>
> <blob.jpeg>