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Posted to commits@taverna.apache.org by st...@apache.org on 2015/02/17 12:47:10 UTC
[43/50] [abbrv] incubator-taverna-plugin-bioinformatics git commit:
Merge https://github.com/taverna/taverna-biomoby-activity master
Merge https://github.com/taverna/taverna-biomoby-activity master
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/commit/7db454e6
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/tree/7db454e6
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/diff/7db454e6
Branch: refs/heads/master
Commit: 7db454e664a6d2ea1fbf0c794a3fe33963bfaa2f
Parents: f6fa5ca 709e8c1
Author: Stian Soiland-Reyes <st...@apache.org>
Authored: Mon Feb 2 09:57:58 2015 +0000
Committer: Stian Soiland-Reyes <st...@apache.org>
Committed: Mon Feb 2 09:57:58 2015 +0000
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taverna-biomoby-activity/pom.xml | 142 ++
.../t2/activities/biomoby/BiomobyActivity.java | 1319 ++++++++++++
.../BiomobyActivityConfigurationBean.java | 142 ++
.../biomoby/BiomobyActivityFactory.java | 49 +
.../biomoby/BiomobyActivityHealthChecker.java | 45 +
.../t2/activities/biomoby/BiomobyCache.java | 78 +
.../biomoby/BiomobyObjectActivity.java | 545 +++++
.../BiomobyObjectActivityConfigurationBean.java | 81 +
.../biomoby/BiomobyObjectActivityFactory.java | 49 +
.../BiomobyObjectActivityHealthChecker.java | 57 +
.../biomoby/ExecuteAsyncCgiService.java | 517 +++++
.../biomoby/ExecuteAsyncMobyService.java | 695 +++++++
.../activities/biomoby/ExecuteCgiService.java | 70 +
.../activities/biomoby/ExecuteMobyService.java | 38 +
.../activities/biomoby/GetOntologyThread.java | 59 +
.../biomoby/MobyParseDatatypeActivity.java | 417 ++++
...yParseDatatypeActivityConfigurationBean.java | 81 +
.../MobyParseDatatypeActivityFactory.java | 49 +
.../MobyParseDatatypeActivityHealthChecker.java | 58 +
.../t2/activities/biomoby/ParseMobyXML.java | 192 ++
.../activities/biomoby/RetrieveWsdlThread.java | 57 +
.../t2/activities/biomoby/XMLUtilities.java | 1927 ++++++++++++++++++
...averna.t2.workflowmodel.health.HealthChecker | 3 +
.../spring/biomoby-activity-context-osgi.xml | 17 +
.../spring/biomoby-activity-context.xml | 14 +
.../BiomobyActivityHealthCheckerTest.java | 45 +
.../BiomobyObjectActivityHealthCheckerTest.java | 45 +
...yParseDatatypeActivityHealthCheckerTest.java | 45 +
28 files changed, 6836 insertions(+)
----------------------------------------------------------------------