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Posted to commits@sdap.apache.org by ea...@apache.org on 2020/07/16 17:14:49 UTC
[incubator-sdap-nexus] branch climatology updated (33378d6 ->
37ca8b3)
This is an automated email from the ASF dual-hosted git repository.
eamonford pushed a change to branch climatology
in repository https://gitbox.apache.org/repos/asf/incubator-sdap-nexus.git.
discard 33378d6 cleanup
discard 08462eb cleanup
discard 0363a6c wip
add c26054a SDAP-238, SDAP-239, SDAP-246: Add Collection Manager, Granule Ingester, and Config Operator to NEXUS Helm chart
add f77b0f3 SDAP-249 : add solr time out client argument to webapp, use it in the data acces… (#101)
add de242e9 Sdap 252 (#104)
add 55e0a25 wip
add bb99e26 cleanup
add 37ca8b3 cleanup
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Summary of changes:
.gitignore | 5 +-
analysis/README.md | 53 ++-
.../README.md => analysis/__init__.py | 0
analysis/conda-requirements.txt | 32 +-
analysis/setup.py | 24 +-
.../algorithms/StandardDeviationSearch_test.py | 38 +-
.../tests/algorithms/longitudelatitudemap_test.py | 16 +-
.../{webservice => tests}/config/algorithms.ini | 0
analysis/tests/webapp_test.py | 69 +++
analysis/webservice/NexusHandler.py | 495 +-------------------
analysis/webservice/WorkflowDriver.py | 4 +-
analysis/webservice/__init__.py | 1 -
analysis/webservice/algorithms/Capabilities.py | 15 +-
analysis/webservice/algorithms/ColorBarHandler.py | 8 +-
analysis/webservice/algorithms/CorrelationMap.py | 11 +-
.../algorithms/DailyDifferenceAverage.py | 9 +-
.../webservice/algorithms/DataInBoundsSearch.py | 11 +-
analysis/webservice/algorithms/DataSeriesList.py | 8 +-
analysis/webservice/algorithms/DelayTest.py | 6 +-
analysis/webservice/algorithms/ErrorTosserTest.py | 7 +-
analysis/webservice/algorithms/Heartbeat.py | 9 +-
analysis/webservice/algorithms/HofMoeller.py | 22 +-
.../webservice/algorithms/LongitudeLatitudeMap.py | 11 +-
analysis/webservice/algorithms/MapFetchHandler.py | 32 +-
analysis/webservice/algorithms/NexusCalcHandler.py | 77 +++
.../algorithms/StandardDeviationSearch.py | 13 +-
analysis/webservice/algorithms/TileSearch.py | 8 +-
analysis/webservice/algorithms/TimeAvgMap.py | 13 +-
analysis/webservice/algorithms/TimeSeries.py | 21 +-
analysis/webservice/algorithms/TimeSeriesSolr.py | 9 +-
.../webservice/algorithms/doms/BaseDomsHandler.py | 4 +-
.../webservice/algorithms/doms/DatasetListQuery.py | 6 +-
.../algorithms/doms/DomsInitialization.py | 30 +-
.../webservice/algorithms/doms/MatchupQuery.py | 8 +-
.../webservice/algorithms/doms/MetadataQuery.py | 4 +-
.../webservice/algorithms/doms/ResultsPlotQuery.py | 4 +-
.../webservice/algorithms/doms/ResultsRetrieval.py | 4 +-
analysis/webservice/algorithms/doms/StatsQuery.py | 4 +-
analysis/webservice/algorithms/doms/ValuesQuery.py | 4 +-
.../{domsconfig.ini => domsconfig.ini.default} | 1 +
.../webservice/algorithms/doms/histogramplot.py | 3 +-
.../webservice/algorithms/doms/insitusubset.py | 4 +-
analysis/webservice/algorithms/doms/mapplot.py | 3 +-
analysis/webservice/algorithms/doms/scatterplot.py | 3 +-
analysis/webservice/algorithms/doms/subsetter.py | 4 +-
.../webservice/algorithms_spark/ClimMapSpark.py | 25 +-
.../webservice/algorithms_spark/CorrMapSpark.py | 13 +-
.../DailyDifferenceAverageSpark.py | 11 +-
.../webservice/algorithms_spark/HofMoellerSpark.py | 29 +-
analysis/webservice/algorithms_spark/Matchup.py | 17 +-
.../algorithms_spark/MaximaMinimaSpark.py | 10 +-
.../NexusCalcSparkHandler.py} | 379 +++------------
.../webservice/algorithms_spark/TimeAvgMapSpark.py | 68 ++-
.../webservice/algorithms_spark/TimeSeriesSpark.py | 23 +-
.../webservice/algorithms_spark/VarianceSpark.py | 10 +-
analysis/webservice/algorithms_spark/__init__.py | 11 +
.../webservice/nexus_tornado/__init__.py | 0
.../webservice/nexus_tornado/request/__init__.py | 0
.../request/handlers/NexusRequestHandler.py | 63 +++
.../nexus_tornado/request/handlers/__init__.py | 1 +
.../request/renderers/NexusCSVRenderer.py | 17 +
.../request/renderers/NexusJSONRenderer.py | 19 +
.../request/renderers/NexusNETCDFRenderer.py | 17 +
.../request/renderers/NexusPNGRenderer.py | 17 +
.../request/renderers/NexusRendererFactory.py | 16 +
.../request/renderers/NexusZIPRenderer.py | 17 +
.../nexus_tornado/request/renderers/__init__.py | 6 +
analysis/webservice/webapp.py | 171 ++-----
analysis/webservice/webapp_livy.py | 12 +-
analysis/webservice/webmodel.py | 520 ---------------------
analysis/webservice/webmodel/CustomEncoder.py | 49 ++
analysis/webservice/webmodel/Exceptions.py | 19 +
analysis/webservice/webmodel/NexusRequestObject.py | 227 +++++++++
.../webmodel/NexusRequestObjectTornadoFree.py | 108 +++++
analysis/webservice/webmodel/NexusResults.py | 104 +++++
analysis/webservice/webmodel/RequestParameters.py | 23 +
.../webservice/webmodel/StandardNexusErrors.py | 4 +
.../webservice/webmodel/StatsComputeOptions.py | 66 +++
analysis/webservice/webmodel/__init__.py | 10 +
analysis/webservice/webmodel/cached.py | 38 ++
.../{datastores.ini => datastores.ini.default} | 1 +
data-access/nexustiles/dao/CassandraProxy.py | 10 +-
data-access/nexustiles/dao/SolrProxy.py | 7 +-
data-access/nexustiles/nexustiles.py | 33 +-
data-access/requirements.txt | 10 +-
data-access/setup.py | 2 +-
docker/nexus-webapp/Dockerfile | 8 +-
helm/Chart.yaml | 4 +-
helm/README.md | 24 +-
helm/crds/gitbasedconfig-crd.yml | 34 ++
helm/requirements.yaml | 4 +
helm/templates/_helpers.tpl | 47 ++
helm/templates/collection-manager.yml | 67 +++
helm/templates/collections-config-gitcfg.yml | 13 +
helm/templates/config-operator-rbac.yml | 19 +
helm/templates/config-operator.yml | 24 +
helm/templates/granule-ingester.yml | 45 ++
helm/templates/history-pvc.yml | 12 +
helm/templates/{ingress.yaml => ingress.yml} | 0
.../{root-webpage.yaml => root-webpage.yml} | 0
helm/templates/{webapp.yaml => webapp.yml} | 6 +-
helm/values.yaml | 114 ++++-
102 files changed, 1895 insertions(+), 1822 deletions(-)
copy integrations/python-client/README.md => analysis/__init__.py (100%)
copy analysis/{webservice => tests}/config/algorithms.ini (100%)
create mode 100644 analysis/tests/webapp_test.py
create mode 100644 analysis/webservice/algorithms/NexusCalcHandler.py
rename analysis/webservice/algorithms/doms/{domsconfig.ini => domsconfig.ini.default} (89%)
copy analysis/webservice/{NexusHandler.py => algorithms_spark/NexusCalcSparkHandler.py} (53%)
copy integrations/python-client/README.md => analysis/webservice/nexus_tornado/__init__.py (100%)
copy integrations/python-client/README.md => analysis/webservice/nexus_tornado/request/__init__.py (100%)
create mode 100644 analysis/webservice/nexus_tornado/request/handlers/NexusRequestHandler.py
create mode 100644 analysis/webservice/nexus_tornado/request/handlers/__init__.py
create mode 100644 analysis/webservice/nexus_tornado/request/renderers/NexusCSVRenderer.py
create mode 100644 analysis/webservice/nexus_tornado/request/renderers/NexusJSONRenderer.py
create mode 100644 analysis/webservice/nexus_tornado/request/renderers/NexusNETCDFRenderer.py
create mode 100644 analysis/webservice/nexus_tornado/request/renderers/NexusPNGRenderer.py
create mode 100644 analysis/webservice/nexus_tornado/request/renderers/NexusRendererFactory.py
create mode 100644 analysis/webservice/nexus_tornado/request/renderers/NexusZIPRenderer.py
create mode 100644 analysis/webservice/nexus_tornado/request/renderers/__init__.py
delete mode 100644 analysis/webservice/webmodel.py
create mode 100644 analysis/webservice/webmodel/CustomEncoder.py
create mode 100644 analysis/webservice/webmodel/Exceptions.py
create mode 100644 analysis/webservice/webmodel/NexusRequestObject.py
create mode 100644 analysis/webservice/webmodel/NexusRequestObjectTornadoFree.py
create mode 100644 analysis/webservice/webmodel/NexusResults.py
create mode 100644 analysis/webservice/webmodel/RequestParameters.py
create mode 100644 analysis/webservice/webmodel/StandardNexusErrors.py
create mode 100644 analysis/webservice/webmodel/StatsComputeOptions.py
create mode 100644 analysis/webservice/webmodel/__init__.py
create mode 100644 analysis/webservice/webmodel/cached.py
rename data-access/nexustiles/config/{datastores.ini => datastores.ini.default} (88%)
create mode 100644 helm/crds/gitbasedconfig-crd.yml
create mode 100644 helm/templates/_helpers.tpl
create mode 100644 helm/templates/collection-manager.yml
create mode 100644 helm/templates/collections-config-gitcfg.yml
create mode 100644 helm/templates/config-operator-rbac.yml
create mode 100644 helm/templates/config-operator.yml
create mode 100644 helm/templates/granule-ingester.yml
create mode 100644 helm/templates/history-pvc.yml
rename helm/templates/{ingress.yaml => ingress.yml} (100%)
rename helm/templates/{root-webpage.yaml => root-webpage.yml} (100%)
rename helm/templates/{webapp.yaml => webapp.yml} (93%)